Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45205 * 109.46644 * 2 1 4 4 C 1.34230 * 117.00012 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47284 * 60.00018 * 6 4 3 8 8 C 1.52996 * 109.46990 * 299.99470 * 6 4 3 9 9 C 1.53000 * 109.47328 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47060 * 60.00126 * 9 8 6 11 11 C 1.53006 * 109.47127 * 300.00449 * 10 9 8 12 12 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 14 14 C 1.46906 * 110.99961 * 84.99970 * 13 11 10 15 15 C 1.52998 * 109.46913 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.47089 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99665 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00423 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99547 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00267 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47498 * 89.99887 * 20 18 16 22 22 H 1.48504 * 109.47086 * 209.99873 * 20 18 16 23 23 H 1.48497 * 109.47159 * 329.99703 * 20 18 16 24 24 C 1.52997 * 109.47164 * 59.99836 * 11 10 9 25 25 H 1.08996 * 109.47412 * 299.99745 * 1 2 3 26 26 H 1.08998 * 109.47506 * 60.00938 * 1 2 3 27 27 H 1.09011 * 109.46752 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47412 * 240.00255 * 2 1 3 29 29 H 1.08998 * 109.47506 * 119.99062 * 2 1 3 30 30 H 1.09004 * 109.47368 * 60.00232 * 8 6 4 31 31 H 1.09001 * 109.47372 * 300.00388 * 8 6 4 32 32 H 1.09002 * 109.47398 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47194 * 300.00476 * 9 8 6 34 34 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 35 35 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 36 36 H 1.00895 * 110.99835 * 208.94971 * 13 11 10 37 37 H 1.08996 * 109.46971 * 299.99790 * 14 13 11 38 38 H 1.08994 * 109.47376 * 59.99710 * 14 13 11 39 39 H 1.09005 * 109.47167 * 299.99475 * 15 14 13 40 40 H 1.08996 * 109.47723 * 60.00027 * 15 14 13 41 41 H 0.97003 * 119.99545 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47045 * 180.02562 * 24 11 10 43 43 H 1.09001 * 109.47375 * 59.99966 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5869 -0.0005 6 6 3.9205 2.9377 -0.0012 7 1 3.5849 3.4700 0.8887 8 6 3.4485 3.6841 -1.2505 9 6 4.0337 5.0978 -1.2515 10 6 5.5615 5.0173 -1.2523 11 6 6.0336 4.2707 -0.0029 12 1 5.6983 4.8034 0.8870 13 7 7.5005 4.1929 -0.0040 14 6 8.0925 5.4066 0.5745 15 6 9.6178 5.2884 0.5567 16 6 10.2251 6.5337 1.1495 17 1 9.5869 7.3300 1.5032 18 6 11.5953 6.6565 1.2404 19 7 12.3724 5.6865 0.8102 20 14 12.3481 8.1998 1.9759 21 1 12.5162 8.0192 3.4402 22 1 13.6726 8.4499 1.3528 23 1 11.4539 9.3573 1.7194 24 6 5.4484 2.8571 -0.0020 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.3600 3.7411 -1.2502 31 1 3.7842 3.1517 -2.1404 32 1 3.6971 5.6298 -2.1414 33 1 3.6984 5.6305 -0.3616 34 1 5.8969 4.4846 -2.1421 35 1 5.9785 6.0244 -1.2526 36 1 7.8192 3.3682 0.4820 37 1 7.7881 6.2740 -0.0113 38 1 7.7495 5.5238 1.6023 39 1 9.9218 4.4210 1.1427 40 1 9.9612 5.1710 -0.4711 41 1 13.3365 5.7731 0.8738 42 1 5.7843 2.3254 0.8883 43 1 5.7836 2.3244 -0.8919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255341223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = -122.337553 kcal Electronic energy + Delta-G solvation = -20578.014318 eV Core-core repulsion = 17428.694206 eV Total energy + Delta-G solvation = -3149.320113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88882 -38.65284 -36.76786 -35.15567 -32.91334 -32.12312 -31.06296 -30.33774 -27.55228 -24.90110 -23.99895 -22.91831 -22.00712 -20.88859 -20.33408 -19.67435 -17.76642 -16.79034 -16.69780 -16.18515 -15.17824 -15.03134 -14.56911 -14.48596 -14.20716 -14.09848 -13.68675 -13.27713 -13.00434 -12.87628 -12.57300 -12.27075 -12.14906 -11.96396 -11.89180 -11.51371 -11.22910 -11.06794 -10.96972 -10.82311 -10.71218 -10.68705 -10.59904 -10.38466 -10.10496 -9.89322 -9.32397 -9.11406 -8.33262 -7.79397 -5.97569 -4.00160 2.04062 2.42610 3.33269 3.39397 3.42694 4.32204 4.37195 4.50372 4.53672 4.59264 4.64334 4.87178 4.92008 5.03531 5.11821 5.24987 5.32445 5.33951 5.38290 5.40734 5.43074 5.45441 5.59572 5.64009 5.84410 5.94899 6.00678 6.13986 6.18176 6.22158 6.34932 6.38529 6.42204 6.56628 7.02186 7.53186 7.58283 7.76138 7.85846 7.99734 8.11717 8.45994 9.07250 9.63449 11.13854 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042005 B = 0.002891 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.421325 B = 9681.428144 C =10036.040951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.466 3.534 5 O -0.504 6.504 6 C -0.075 4.075 7 H 0.108 0.892 8 C -0.109 4.109 9 C -0.117 4.117 10 C -0.111 4.111 11 C 0.089 3.911 12 H 0.040 0.960 13 N -0.688 5.688 14 C 0.067 3.933 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.105 4.105 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.338 0.662 37 H 0.058 0.942 38 H 0.014 0.986 39 H 0.013 0.987 40 H 0.025 0.975 41 H 0.260 0.740 42 H 0.069 0.931 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.490 -7.949 -2.924 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.391 6.391 6 C -0.094 4.094 7 H 0.126 0.874 8 C -0.146 4.146 9 C -0.155 4.155 10 C -0.149 4.149 11 C -0.021 4.021 12 H 0.058 0.942 13 N -0.319 5.319 14 C -0.061 4.061 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.143 4.143 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.035 -8.097 -3.591 25.615 hybrid contribution 0.372 0.437 1.440 1.550 sum -23.663 -7.659 -2.152 24.964 Atomic orbital electron populations 1.21803 0.92631 1.02944 1.03531 1.23020 0.95353 0.80433 1.02614 1.86513 1.24807 1.32198 1.84087 1.23903 0.80365 0.92878 0.72031 1.90679 1.60373 1.43188 1.44893 1.21107 0.96897 0.89246 1.02199 0.87441 1.21536 1.00809 0.96400 0.95873 1.21543 0.96240 0.95417 1.02277 1.21581 0.93617 1.01166 0.98536 1.21455 0.89414 0.94072 0.97168 0.94213 1.60603 1.04494 1.06294 1.60478 1.22193 0.98500 0.90493 0.94906 1.19073 0.87593 0.96791 0.97836 1.21178 0.91518 1.02900 1.40388 0.92791 1.25011 0.97375 0.96427 0.95626 1.69982 1.04076 1.32232 1.46939 0.86586 0.78618 0.83524 0.79206 1.20729 1.21204 1.19899 1.21641 0.90920 0.97692 1.04051 0.91476 0.91448 0.90285 0.91252 0.91286 0.90805 0.91276 0.91290 0.91784 0.91182 0.91455 0.84419 0.92321 0.96741 0.96835 0.95642 0.93008 0.91211 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.73 10.12 -39.26 -0.40 -4.13 16 4 C 0.47 5.56 7.25 36.01 0.26 5.82 16 5 O -0.50 -7.50 15.73 -18.75 -0.29 -7.80 16 6 C -0.07 -0.79 2.63 -91.77 -0.24 -1.03 16 7 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 8 C -0.11 -1.01 5.13 -26.73 -0.14 -1.14 16 9 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 10 C -0.11 -1.43 5.43 -26.73 -0.15 -1.57 16 11 C 0.09 1.27 2.49 -67.71 -0.17 1.10 16 12 H 0.04 0.57 7.80 -51.93 -0.41 0.17 16 13 N -0.69 -12.35 6.31 -106.73 -0.67 -13.02 16 14 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 15 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 16 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 20 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.11 -1.34 3.76 -26.73 -0.10 -1.44 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 30 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.95 7.45 -51.93 -0.39 0.56 16 36 H 0.34 5.98 8.34 -39.29 -0.33 5.66 16 37 H 0.06 1.24 7.43 -51.93 -0.39 0.85 16 38 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -31.93 347.75 -8.86 -40.79 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.80 Total: -0.32 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.66 Total: -11.09 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.06 Total: -39.53 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.69 Total: -11.93 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.93 -8.86 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255341223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.544 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds