Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45205 * 109.46644 * 2 1 4 4 C 1.34230 * 117.00012 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47284 * 60.00018 * 6 4 3 8 8 C 1.52996 * 109.46990 * 299.99470 * 6 4 3 9 9 C 1.53000 * 109.47328 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47060 * 60.00126 * 9 8 6 11 11 C 1.53006 * 109.47127 * 300.00449 * 10 9 8 12 12 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 14 14 C 1.46906 * 110.99961 * 84.99970 * 13 11 10 15 15 C 1.52998 * 109.46913 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.47089 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99665 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00423 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99547 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00267 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47498 * 89.99887 * 20 18 16 22 22 H 1.48504 * 109.47086 * 209.99873 * 20 18 16 23 23 H 1.48497 * 109.47159 * 329.99703 * 20 18 16 24 24 C 1.52997 * 109.47164 * 59.99836 * 11 10 9 25 25 H 1.08996 * 109.47412 * 299.99745 * 1 2 3 26 26 H 1.08998 * 109.47506 * 60.00938 * 1 2 3 27 27 H 1.09011 * 109.46752 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47412 * 240.00255 * 2 1 3 29 29 H 1.08998 * 109.47506 * 119.99062 * 2 1 3 30 30 H 1.09004 * 109.47368 * 60.00232 * 8 6 4 31 31 H 1.09001 * 109.47372 * 300.00388 * 8 6 4 32 32 H 1.09002 * 109.47398 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47194 * 300.00476 * 9 8 6 34 34 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 35 35 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 36 36 H 1.00895 * 110.99835 * 208.94971 * 13 11 10 37 37 H 1.08996 * 109.46971 * 299.99790 * 14 13 11 38 38 H 1.08994 * 109.47376 * 59.99710 * 14 13 11 39 39 H 1.09005 * 109.47167 * 299.99475 * 15 14 13 40 40 H 1.08996 * 109.47723 * 60.00027 * 15 14 13 41 41 H 0.97003 * 119.99545 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47045 * 180.02562 * 24 11 10 43 43 H 1.09001 * 109.47375 * 59.99966 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5869 -0.0005 6 6 3.9205 2.9377 -0.0012 7 1 3.5849 3.4700 0.8887 8 6 3.4485 3.6841 -1.2505 9 6 4.0337 5.0978 -1.2515 10 6 5.5615 5.0173 -1.2523 11 6 6.0336 4.2707 -0.0029 12 1 5.6983 4.8034 0.8870 13 7 7.5005 4.1929 -0.0040 14 6 8.0925 5.4066 0.5745 15 6 9.6178 5.2884 0.5567 16 6 10.2251 6.5337 1.1495 17 1 9.5869 7.3300 1.5032 18 6 11.5953 6.6565 1.2404 19 7 12.3724 5.6865 0.8102 20 14 12.3481 8.1998 1.9759 21 1 12.5162 8.0192 3.4402 22 1 13.6726 8.4499 1.3528 23 1 11.4539 9.3573 1.7194 24 6 5.4484 2.8571 -0.0020 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.3600 3.7411 -1.2502 31 1 3.7842 3.1517 -2.1404 32 1 3.6971 5.6298 -2.1414 33 1 3.6984 5.6305 -0.3616 34 1 5.8969 4.4846 -2.1421 35 1 5.9785 6.0244 -1.2526 36 1 7.8192 3.3682 0.4820 37 1 7.7881 6.2740 -0.0113 38 1 7.7495 5.5238 1.6023 39 1 9.9218 4.4210 1.1427 40 1 9.9612 5.1710 -0.4711 41 1 13.3365 5.7731 0.8738 42 1 5.7843 2.3254 0.8883 43 1 5.7836 2.3244 -0.8919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255341223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = -141.650896 kcal Electronic energy + Delta-G solvation = -20578.851808 eV Core-core repulsion = 17428.694206 eV Total energy + Delta-G solvation = -3150.157602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.81155 -39.69322 -37.71366 -36.65024 -34.88017 -32.85144 -32.01273 -31.85583 -29.13751 -26.04166 -25.62138 -23.67366 -22.98431 -22.46244 -21.57532 -20.68970 -18.74744 -18.45715 -17.61512 -17.51436 -16.62375 -16.34043 -16.04389 -15.66390 -15.31588 -15.07743 -14.70588 -14.44697 -14.42348 -13.88635 -13.68776 -13.45192 -13.33564 -12.94455 -12.91933 -12.85324 -12.55279 -12.48169 -12.40980 -12.25474 -12.00623 -11.67789 -11.63467 -11.53297 -11.45295 -11.34783 -11.09697 -11.04217 -10.56547 -9.27690 -8.20200 -6.32028 1.11518 1.40345 1.42278 1.53461 1.61927 2.40657 3.13095 3.21469 3.49627 3.67681 3.86753 3.99766 4.07664 4.09895 4.16728 4.29707 4.35315 4.39826 4.41430 4.47286 4.57096 4.63102 4.64850 4.85531 4.92784 4.99075 5.05584 5.10444 5.11557 5.15093 5.17686 5.28766 5.33048 5.44209 5.46113 5.52174 5.67911 5.79988 6.15509 6.31635 6.53635 6.68546 6.85609 7.37337 8.92071 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042005 B = 0.002891 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.421325 B = 9681.428144 C =10036.040951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.469 3.531 5 O -0.541 6.541 6 C -0.070 4.070 7 H 0.129 0.871 8 C -0.103 4.103 9 C -0.108 4.108 10 C -0.110 4.110 11 C 0.090 3.910 12 H 0.047 0.953 13 N -0.697 5.697 14 C 0.087 3.913 15 C 0.030 3.970 16 C -0.543 4.543 17 H 0.062 0.938 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 C -0.097 4.097 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.336 0.664 37 H 0.060 0.940 38 H 0.019 0.981 39 H -0.012 1.012 40 H -0.007 1.007 41 H 0.264 0.736 42 H 0.060 0.940 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.761 -6.667 -2.471 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.314 3.686 5 O -0.431 6.431 6 C -0.090 4.090 7 H 0.146 0.854 8 C -0.140 4.140 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.019 4.019 12 H 0.065 0.935 13 N -0.328 5.328 14 C -0.041 4.041 15 C -0.007 4.007 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.793 3.207 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.135 4.135 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.154 0.846 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.007 0.993 40 H 0.011 0.989 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.350 -6.811 -3.143 27.397 hybrid contribution 1.051 -0.052 1.271 1.651 sum -25.299 -6.863 -1.871 26.280 Atomic orbital electron populations 1.21816 0.90187 1.04337 1.03863 1.23293 0.97244 0.79392 1.02356 1.86509 1.23706 1.33483 1.83511 1.24106 0.80701 0.92863 0.70978 1.90671 1.61260 1.44399 1.46763 1.21099 0.94896 0.89014 1.03974 0.85373 1.21526 1.02064 0.95688 0.94725 1.21496 0.93310 0.95977 1.03773 1.21578 0.96276 0.99803 0.97182 1.21551 0.86803 0.95319 0.98246 0.93488 1.60551 1.07191 1.04958 1.60104 1.21792 0.94974 0.91959 0.95402 1.18935 0.91336 0.95340 0.95096 1.21618 0.92261 1.03732 1.40570 0.91981 1.26023 0.97979 1.00088 0.95913 1.70126 1.04507 1.34586 1.48089 0.85389 0.77661 0.79160 0.78470 1.19725 1.20770 1.18546 1.21487 0.92886 0.96265 1.02871 0.91166 0.91022 0.88387 0.91553 0.91659 0.88556 0.91847 0.89584 0.90511 0.92281 0.92776 0.84567 0.92108 0.96309 0.99320 0.98882 0.92771 0.92143 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 71.98 0.74 -0.54 16 2 C 0.05 0.78 6.19 71.98 0.45 1.22 16 3 O -0.36 -6.78 10.12 -51.41 -0.52 -7.30 16 4 C 0.47 10.72 7.25 71.24 0.52 11.24 16 5 O -0.54 -16.15 15.73 21.97 0.35 -15.81 16 6 C -0.07 -1.36 2.63 -11.54 -0.03 -1.40 16 7 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 8 C -0.10 -1.63 5.13 30.59 0.16 -1.48 16 9 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 10 C -0.11 -2.73 5.43 30.60 0.17 -2.56 16 11 C 0.09 2.51 2.49 44.92 0.11 2.62 16 12 H 0.05 1.27 7.80 -2.39 -0.02 1.25 16 13 N -0.70 -25.51 6.31 -491.57 -3.10 -28.61 16 14 C 0.09 3.75 5.42 86.30 0.47 4.21 16 15 C 0.03 1.67 5.23 29.85 0.16 1.82 16 16 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 17 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 18 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 19 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 20 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 C -0.10 -2.45 3.76 30.59 0.12 -2.33 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 29 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.48 7.45 -2.39 -0.02 1.46 16 36 H 0.34 12.35 8.34 -89.70 -0.75 11.60 16 37 H 0.06 2.57 7.43 -2.39 -0.02 2.55 16 38 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 39 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 43 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 Total: -1.00 -69.95 347.75 2.97 -66.98 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.21 Total: 15.52 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 3.72 Total: -19.76 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -2.82 Total: -86.42 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.17 Total: -23.11 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -69.95 2.97 -66.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255341223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.672 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds