Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47038 * 2 1 4 4 C 1.34225 * 116.99943 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00047 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99990 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.47304 * 299.99904 * 6 4 3 8 8 C 1.52999 * 109.46824 * 60.00712 * 6 4 3 9 9 C 1.52997 * 109.46991 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47131 * 299.99311 * 9 8 6 11 11 C 1.53002 * 109.46972 * 60.00459 * 10 9 8 12 12 H 1.08996 * 109.47407 * 59.99513 * 11 10 9 13 13 N 1.46896 * 109.47246 * 179.97438 * 11 10 9 14 14 C 1.46897 * 111.00439 * 274.99807 * 13 11 10 15 15 C 1.52994 * 109.47427 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47037 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00168 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99572 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46938 * 89.99980 * 20 18 16 22 22 H 1.48497 * 109.47055 * 209.99707 * 20 18 16 23 23 H 1.48492 * 109.47298 * 329.99874 * 20 18 16 24 24 C 1.52997 * 109.46817 * 299.99733 * 11 10 9 25 25 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47413 * 299.99806 * 1 2 3 27 27 H 1.08996 * 109.47599 * 59.99878 * 1 2 3 28 28 H 1.09004 * 109.46731 * 240.00228 * 2 1 3 29 29 H 1.08993 * 109.47109 * 120.00089 * 2 1 3 30 30 H 1.09002 * 109.46719 * 299.99679 * 8 6 4 31 31 H 1.08993 * 109.47839 * 59.99520 * 8 6 4 32 32 H 1.09001 * 109.47289 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47611 * 59.99933 * 9 8 6 34 34 H 1.08996 * 109.47452 * 300.00000 * 10 9 8 35 35 H 1.09000 * 109.47054 * 180.02562 * 10 9 8 36 36 H 1.00904 * 111.00011 * 38.95366 * 13 11 10 37 37 H 1.09001 * 109.46845 * 300.00443 * 14 13 11 38 38 H 1.09004 * 109.46906 * 59.99424 * 14 13 11 39 39 H 1.08998 * 109.47143 * 300.00172 * 15 14 13 40 40 H 1.08996 * 109.46946 * 60.00412 * 15 14 13 41 41 H 0.97003 * 120.00159 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.47502 * 300.00518 * 24 11 10 43 43 H 1.09001 * 109.47289 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5852 3.4691 -0.8904 8 6 3.4486 3.6850 1.2487 9 6 4.0339 5.0986 1.2485 10 6 5.5617 5.0180 1.2496 11 6 6.0339 4.2705 0.0009 12 1 5.6987 4.8023 -0.8895 13 7 7.5008 4.1936 0.0016 14 6 8.0919 5.4069 -0.5783 15 6 9.6173 5.2902 -0.5597 16 6 10.2236 6.5352 -1.1541 17 1 9.5849 7.3301 -1.5100 18 6 11.5939 6.6592 -1.2446 19 7 12.3717 5.6906 -0.8127 20 14 12.3454 8.2021 -1.9821 21 1 12.5748 9.2025 -0.9088 22 1 13.6392 7.8629 -2.6273 23 1 11.4198 8.7676 -2.9962 24 6 5.4486 2.8568 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.3601 3.7420 1.2481 31 1 3.7841 3.1534 2.1391 32 1 3.6972 5.6314 2.1378 33 1 3.6987 5.6306 0.3581 34 1 5.8969 4.4862 2.1400 35 1 5.9787 6.0251 1.2499 36 1 7.8538 4.0287 0.9324 37 1 7.7485 5.5227 -1.6063 38 1 7.7871 6.2748 0.0065 39 1 9.9603 5.1746 0.4684 40 1 9.9224 4.4223 -1.1444 41 1 13.3357 5.7779 -0.8760 42 1 5.7837 2.3249 0.8915 43 1 5.7853 2.3240 -0.8882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255341224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = -122.819441 kcal Electronic energy + Delta-G solvation = -20578.626481 eV Core-core repulsion = 17429.285472 eV Total energy + Delta-G solvation = -3149.341009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85097 -38.69635 -36.74650 -35.15332 -32.92610 -32.09008 -31.02893 -30.33761 -27.52632 -24.83821 -24.00359 -22.91567 -21.85210 -20.86731 -20.70749 -19.67533 -17.75016 -16.77096 -16.68528 -16.21557 -15.21564 -14.88833 -14.59258 -14.39642 -14.27971 -13.73972 -13.70185 -13.38443 -13.01479 -12.87288 -12.53747 -12.40412 -12.17523 -11.97405 -11.91026 -11.44186 -11.16580 -11.09810 -10.93641 -10.82281 -10.77429 -10.72855 -10.53488 -10.38829 -10.23644 -9.94332 -9.33355 -9.11643 -8.33548 -7.74735 -5.97762 -4.00350 2.08600 2.46222 3.33047 3.39276 3.42585 4.36755 4.38289 4.50890 4.55968 4.61373 4.66519 4.88340 4.94180 5.06526 5.09919 5.13209 5.28454 5.38019 5.39316 5.42194 5.43245 5.49334 5.59702 5.64301 5.84309 5.91352 5.94354 6.10135 6.11010 6.25942 6.33476 6.36893 6.41574 6.53494 7.00623 7.52721 7.62913 7.75726 7.85912 7.99347 8.11550 8.45716 9.07075 9.63230 11.13662 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.002890 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.402392 B = 9686.308232 C =10034.274590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.465 3.535 5 O -0.503 6.503 6 C -0.077 4.077 7 H 0.108 0.892 8 C -0.109 4.109 9 C -0.112 4.112 10 C -0.154 4.154 11 C 0.089 3.911 12 H 0.075 0.925 13 N -0.687 5.687 14 C 0.067 3.933 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.091 4.091 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.337 0.663 37 H 0.057 0.943 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.025 0.975 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.401 -7.187 4.240 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.390 6.390 6 C -0.097 4.097 7 H 0.126 0.874 8 C -0.146 4.146 9 C -0.150 4.150 10 C -0.193 4.193 11 C -0.021 4.021 12 H 0.093 0.907 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.129 4.129 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.959 -7.919 3.649 25.496 hybrid contribution 0.390 1.254 0.326 1.353 sum -23.569 -6.665 3.975 24.814 Atomic orbital electron populations 1.21800 0.92676 1.02918 1.03503 1.23011 0.95311 0.80494 1.02611 1.86511 1.24894 1.32150 1.84151 1.23903 0.80307 0.92918 0.72083 1.90683 1.60350 1.43164 1.44759 1.21150 0.97447 0.89161 1.01936 0.87375 1.21529 1.00844 0.96204 0.96057 1.21461 0.95659 0.95637 1.02292 1.22363 0.95674 1.01597 0.99638 1.21511 0.89436 0.94189 0.96996 0.90659 1.60605 1.03353 1.40169 1.27449 1.22174 0.98550 0.87813 0.97546 1.19072 0.87573 0.97373 0.97303 1.21178 0.91508 1.02861 1.40449 0.92787 1.25013 0.97380 0.96408 0.95635 1.69976 1.04059 1.32155 1.47025 0.86586 0.78670 0.83354 0.79331 1.20728 1.21205 1.19901 1.21429 0.89601 0.97668 1.04240 0.90309 0.91498 0.91472 0.91257 0.91304 0.90793 0.91454 0.91573 0.91564 0.91748 0.91474 0.84476 0.92429 0.96596 0.96846 0.95647 0.93002 0.91109 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.79 10.12 -39.24 -0.40 -4.19 16 4 C 0.47 5.66 7.25 36.00 0.26 5.92 16 5 O -0.50 -7.66 15.73 -18.75 -0.29 -7.96 16 6 C -0.08 -0.83 2.63 -91.77 -0.24 -1.07 16 7 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 8 C -0.11 -0.99 5.13 -26.73 -0.14 -1.13 16 9 C -0.11 -1.05 5.92 -26.73 -0.16 -1.21 16 10 C -0.15 -1.83 5.17 -26.73 -0.14 -1.97 16 11 C 0.09 1.25 2.47 -67.72 -0.17 1.08 16 12 H 0.08 1.06 7.80 -51.93 -0.40 0.66 16 13 N -0.69 -12.22 6.25 -106.73 -0.67 -12.89 16 14 C 0.07 1.41 5.42 -3.83 -0.02 1.39 16 15 C 0.02 0.64 5.23 -27.89 -0.15 0.49 16 16 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.09 -1.20 4.10 -26.73 -0.11 -1.31 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 35 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 36 H 0.34 5.87 8.47 -39.29 -0.33 5.54 16 37 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 43 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -31.93 347.88 -8.86 -40.79 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.80 Total: -0.11 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -0.66 Total: -11.20 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.07 Total: -39.37 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.69 Total: -12.15 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.93 -8.86 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255341224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.030 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds