Wall clock time and date at job start Mon Mar 30 2020 01:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47038 * 2 1 4 4 C 1.34225 * 116.99943 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00047 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99990 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.47304 * 299.99904 * 6 4 3 8 8 C 1.52999 * 109.46824 * 60.00712 * 6 4 3 9 9 C 1.52997 * 109.46991 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47131 * 299.99311 * 9 8 6 11 11 C 1.53002 * 109.46972 * 60.00459 * 10 9 8 12 12 H 1.08996 * 109.47407 * 59.99513 * 11 10 9 13 13 N 1.46896 * 109.47246 * 179.97438 * 11 10 9 14 14 C 1.46897 * 111.00439 * 274.99807 * 13 11 10 15 15 C 1.52994 * 109.47427 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47037 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00168 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99572 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46938 * 89.99980 * 20 18 16 22 22 H 1.48497 * 109.47055 * 209.99707 * 20 18 16 23 23 H 1.48492 * 109.47298 * 329.99874 * 20 18 16 24 24 C 1.52997 * 109.46817 * 299.99733 * 11 10 9 25 25 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47413 * 299.99806 * 1 2 3 27 27 H 1.08996 * 109.47599 * 59.99878 * 1 2 3 28 28 H 1.09004 * 109.46731 * 240.00228 * 2 1 3 29 29 H 1.08993 * 109.47109 * 120.00089 * 2 1 3 30 30 H 1.09002 * 109.46719 * 299.99679 * 8 6 4 31 31 H 1.08993 * 109.47839 * 59.99520 * 8 6 4 32 32 H 1.09001 * 109.47289 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47611 * 59.99933 * 9 8 6 34 34 H 1.08996 * 109.47452 * 300.00000 * 10 9 8 35 35 H 1.09000 * 109.47054 * 180.02562 * 10 9 8 36 36 H 1.00904 * 111.00011 * 38.95366 * 13 11 10 37 37 H 1.09001 * 109.46845 * 300.00443 * 14 13 11 38 38 H 1.09004 * 109.46906 * 59.99424 * 14 13 11 39 39 H 1.08998 * 109.47143 * 300.00172 * 15 14 13 40 40 H 1.08996 * 109.46946 * 60.00412 * 15 14 13 41 41 H 0.97003 * 120.00159 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.47502 * 300.00518 * 24 11 10 43 43 H 1.09001 * 109.47289 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5852 3.4691 -0.8904 8 6 3.4486 3.6850 1.2487 9 6 4.0339 5.0986 1.2485 10 6 5.5617 5.0180 1.2496 11 6 6.0339 4.2705 0.0009 12 1 5.6987 4.8023 -0.8895 13 7 7.5008 4.1936 0.0016 14 6 8.0919 5.4069 -0.5783 15 6 9.6173 5.2902 -0.5597 16 6 10.2236 6.5352 -1.1541 17 1 9.5849 7.3301 -1.5100 18 6 11.5939 6.6592 -1.2446 19 7 12.3717 5.6906 -0.8127 20 14 12.3454 8.2021 -1.9821 21 1 12.5748 9.2025 -0.9088 22 1 13.6392 7.8629 -2.6273 23 1 11.4198 8.7676 -2.9962 24 6 5.4486 2.8568 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.3601 3.7420 1.2481 31 1 3.7841 3.1534 2.1391 32 1 3.6972 5.6314 2.1378 33 1 3.6987 5.6306 0.3581 34 1 5.8969 4.4862 2.1400 35 1 5.9787 6.0251 1.2499 36 1 7.8538 4.0287 0.9324 37 1 7.7485 5.5227 -1.6063 38 1 7.7871 6.2748 0.0065 39 1 9.9603 5.1746 0.4684 40 1 9.9224 4.4223 -1.1444 41 1 13.3357 5.7779 -0.8760 42 1 5.7837 2.3249 0.8915 43 1 5.7853 2.3240 -0.8882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255341224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:50 Heat of formation + Delta-G solvation = -142.168444 kcal Electronic energy + Delta-G solvation = -20579.465517 eV Core-core repulsion = 17429.285472 eV Total energy + Delta-G solvation = -3150.180045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79336 -39.73385 -37.71105 -36.62911 -34.88129 -32.83890 -31.93198 -31.88053 -29.10646 -25.93407 -25.65965 -23.64605 -22.84744 -22.51318 -21.83108 -20.72652 -18.74139 -18.46465 -17.63100 -17.52728 -16.58716 -16.23757 -16.00425 -15.58731 -15.37932 -14.90935 -14.67644 -14.43791 -14.30348 -13.87143 -13.81477 -13.53270 -13.31377 -13.10027 -12.90423 -12.84249 -12.54584 -12.42938 -12.34354 -12.12095 -12.00847 -11.83221 -11.65132 -11.53137 -11.45520 -11.36020 -11.19430 -11.03546 -10.56234 -9.18809 -8.19894 -6.31625 1.13728 1.40480 1.42488 1.53602 1.63703 2.40894 3.13450 3.26390 3.52466 3.69848 3.91525 3.99942 4.08561 4.09280 4.18307 4.21000 4.34974 4.39398 4.42696 4.51738 4.57452 4.63446 4.70654 4.86443 4.93145 4.99850 5.02822 5.08362 5.13228 5.15651 5.16000 5.25369 5.35498 5.41546 5.45533 5.48703 5.69014 5.80398 6.16392 6.32453 6.56512 6.70770 6.86220 7.37706 8.92387 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.002890 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.402392 B = 9686.308232 C =10034.274590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.356 6.356 4 C 0.468 3.532 5 O -0.542 6.542 6 C -0.072 4.072 7 H 0.128 0.872 8 C -0.102 4.102 9 C -0.105 4.105 10 C -0.149 4.149 11 C 0.091 3.909 12 H 0.079 0.921 13 N -0.699 5.699 14 C 0.088 3.912 15 C 0.030 3.970 16 C -0.543 4.543 17 H 0.062 0.938 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.262 1.262 24 C -0.083 4.083 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.338 0.662 37 H 0.057 0.943 38 H 0.024 0.976 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.263 0.737 42 H 0.058 0.942 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.671 -5.683 4.177 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.313 3.687 5 O -0.431 6.431 6 C -0.092 4.092 7 H 0.146 0.854 8 C -0.139 4.139 9 C -0.143 4.143 10 C -0.188 4.188 11 C -0.019 4.019 12 H 0.097 0.903 13 N -0.329 5.329 14 C -0.041 4.041 15 C -0.008 4.008 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.793 3.207 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.186 1.186 24 C -0.122 4.122 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.277 -6.409 3.591 27.285 hybrid contribution 1.066 0.683 0.359 1.316 sum -25.211 -5.726 3.950 26.153 Atomic orbital electron populations 1.21812 0.90163 1.04330 1.03863 1.23288 0.97251 0.79447 1.02325 1.86508 1.23747 1.33436 1.83554 1.24145 0.80652 0.92947 0.70971 1.90674 1.61283 1.44444 1.46725 1.21132 0.95257 0.88887 1.03880 0.85417 1.21517 1.02052 0.95628 0.94747 1.21435 0.93147 0.95982 1.03749 1.22281 0.97938 1.00433 0.98147 1.21564 0.86804 0.95072 0.98420 0.90320 1.60505 1.06051 1.38694 1.27609 1.21761 0.94911 0.89407 0.97983 1.18938 0.91418 0.95464 0.94950 1.21623 0.92236 1.03683 1.40596 0.91937 1.26025 0.97997 1.00057 0.95944 1.70121 1.04478 1.34526 1.48205 0.85391 0.77687 0.78853 0.78764 1.19620 1.20858 1.18597 1.21270 0.91777 0.96579 1.02543 0.88398 0.91004 0.91173 0.91732 0.91568 0.88654 0.91842 0.89791 0.90449 0.91898 0.92394 0.84427 0.92474 0.95764 0.99178 0.99118 0.92784 0.92350 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 10.29 71.98 0.74 -0.58 16 2 C 0.05 0.80 6.19 71.98 0.45 1.24 16 3 O -0.36 -6.95 10.12 -51.37 -0.52 -7.47 16 4 C 0.47 11.03 7.25 71.24 0.52 11.55 16 5 O -0.54 -16.73 15.73 21.97 0.35 -16.39 16 6 C -0.07 -1.43 2.63 -11.54 -0.03 -1.46 16 7 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 8 C -0.10 -1.58 5.13 30.59 0.16 -1.43 16 9 C -0.11 -1.64 5.92 30.59 0.18 -1.46 16 10 C -0.15 -3.33 5.17 30.59 0.16 -3.17 16 11 C 0.09 2.49 2.47 44.92 0.11 2.60 16 12 H 0.08 2.11 7.80 -2.39 -0.02 2.10 16 13 N -0.70 -25.34 6.25 -491.59 -3.07 -28.42 16 14 C 0.09 3.73 5.42 86.30 0.47 4.20 16 15 C 0.03 1.62 5.23 29.85 0.16 1.78 16 16 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 17 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 20 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 24 C -0.08 -2.19 4.10 30.60 0.13 -2.06 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 29 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 30 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 35 H 0.06 1.42 7.45 -2.39 -0.02 1.40 16 36 H 0.34 12.11 8.47 -89.69 -0.76 11.35 16 37 H 0.06 2.41 8.05 -2.39 -0.02 2.39 16 38 H 0.02 0.98 7.44 -2.39 -0.02 0.96 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 43 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -70.21 347.88 2.99 -67.22 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.20 Total: 15.76 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 3.72 Total: -19.64 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.79 Total: -86.19 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.17 Total: -23.86 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.21 2.99 -67.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255341224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.951 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds