Wall clock time and date at job start Mon Mar 30 2020 01:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47303 * 300.00327 * 6 4 3 8 8 C 1.53000 * 109.46900 * 60.00293 * 6 4 3 9 9 C 1.53002 * 109.47130 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47284 * 300.00135 * 9 8 6 11 11 C 1.53000 * 109.46830 * 59.99666 * 10 9 8 12 12 H 1.09005 * 109.46870 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47154 * 60.00316 * 11 10 9 14 14 C 1.46898 * 111.00123 * 84.99483 * 13 11 10 15 15 C 1.53005 * 109.47068 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.46840 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00291 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99648 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00170 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99747 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47238 * 90.00417 * 20 18 16 22 22 H 1.48506 * 109.47162 * 210.00372 * 20 18 16 23 23 H 1.48501 * 109.47293 * 329.99868 * 20 18 16 24 24 C 1.52994 * 109.47562 * 300.00039 * 11 10 9 25 25 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 29 29 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 30 30 H 1.08998 * 109.47349 * 299.99708 * 8 6 4 31 31 H 1.09000 * 109.47115 * 59.99918 * 8 6 4 32 32 H 1.09003 * 109.47012 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46905 * 60.00137 * 9 8 6 34 34 H 1.09001 * 109.46705 * 300.00146 * 10 9 8 35 35 H 1.08993 * 109.46843 * 179.97438 * 10 9 8 36 36 H 1.00895 * 111.00023 * 208.95141 * 13 11 10 37 37 H 1.09001 * 109.47355 * 300.00006 * 14 13 11 38 38 H 1.09001 * 109.47003 * 60.00079 * 14 13 11 39 39 H 1.09001 * 109.46969 * 300.00159 * 15 14 13 40 40 H 1.09001 * 109.47212 * 60.00124 * 15 14 13 41 41 H 0.96993 * 120.00208 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.47007 * 300.00175 * 24 11 10 43 43 H 1.09003 * 109.47577 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 -0.8904 8 6 3.4486 3.6850 1.2486 9 6 4.0339 5.0986 1.2484 10 6 5.5618 5.0181 1.2494 11 6 6.0339 4.2704 0.0008 12 1 7.1224 4.2134 0.0013 13 7 5.5822 4.9872 -1.1992 14 6 6.5236 6.0556 -1.5599 15 6 6.0201 6.7782 -2.8110 16 6 6.9863 7.8738 -3.1813 17 1 7.8712 8.0381 -2.5843 18 6 6.7411 8.6659 -4.2830 19 7 5.6638 8.4656 -5.0102 20 14 7.9383 10.0244 -4.7416 21 1 8.9669 9.4861 -5.6675 22 1 7.2022 11.1289 -5.4077 23 1 8.5975 10.5385 -3.5142 24 6 5.4487 2.8568 0.0010 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.3601 3.7421 1.2481 31 1 3.7842 3.1533 2.1390 32 1 3.6972 5.6314 2.1378 33 1 3.6987 5.6305 0.3580 34 1 5.8970 4.4861 2.1399 35 1 5.9787 6.0251 1.2489 36 1 5.4446 4.3510 -1.9701 37 1 6.6000 6.7658 -0.7365 38 1 7.5043 5.6236 -1.7592 39 1 5.9434 6.0682 -3.6345 40 1 5.0395 7.2102 -2.6112 41 1 5.4911 9.0230 -5.7850 42 1 5.7839 2.3249 0.8914 43 1 5.7853 2.3240 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255341225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:52 Heat of formation + Delta-G solvation = -137.925778 kcal Electronic energy + Delta-G solvation = -20949.518092 eV Core-core repulsion = 17799.522023 eV Total energy + Delta-G solvation = -3149.996069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79511 -39.78469 -37.68127 -36.37354 -34.71842 -32.82258 -31.94026 -31.79480 -29.29235 -26.00266 -25.58592 -23.64054 -23.23432 -22.38363 -21.71068 -20.04596 -18.71667 -18.41222 -17.61675 -17.59050 -16.72551 -16.43292 -15.94046 -15.56898 -15.23309 -15.01048 -14.65201 -14.33635 -14.24609 -13.74550 -13.68306 -13.37181 -13.11740 -13.00739 -12.98122 -12.86809 -12.81255 -12.51052 -12.36667 -12.19013 -12.03340 -11.75838 -11.52830 -11.43543 -11.34769 -11.21515 -11.04432 -10.98451 -10.54280 -9.20288 -8.18843 -6.29743 1.14167 1.40915 1.42090 1.53217 1.68351 2.41441 3.14722 3.34379 3.53555 3.73413 3.85352 4.00513 4.08123 4.10153 4.28795 4.32048 4.34947 4.43777 4.55014 4.57679 4.66340 4.69960 4.75355 4.85944 4.92632 4.98707 5.06953 5.12140 5.12671 5.16855 5.22705 5.35181 5.41037 5.47449 5.48049 5.66354 5.72448 5.83341 6.18192 6.33349 6.58153 6.71010 6.88134 7.39361 8.93134 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.003428 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.032731 B = 8167.044351 C = 8617.288341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.470 3.530 5 O -0.540 6.540 6 C -0.071 4.071 7 H 0.113 0.887 8 C -0.096 4.096 9 C -0.106 4.106 10 C -0.107 4.107 11 C 0.086 3.914 12 H 0.043 0.957 13 N -0.682 5.682 14 C 0.087 3.913 15 C 0.034 3.966 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.093 4.093 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.335 0.665 37 H 0.059 0.941 38 H 0.014 0.986 39 H -0.012 1.012 40 H -0.003 1.003 41 H 0.263 0.737 42 H 0.082 0.918 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 -14.742 14.369 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.315 3.685 5 O -0.430 6.430 6 C -0.090 4.090 7 H 0.130 0.870 8 C -0.133 4.133 9 C -0.143 4.143 10 C -0.145 4.145 11 C -0.023 4.023 12 H 0.061 0.939 13 N -0.314 5.314 14 C -0.042 4.042 15 C -0.004 4.004 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.789 3.211 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.131 4.131 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.153 0.847 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.007 0.993 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.163 -14.581 14.589 22.183 hybrid contribution 1.314 -0.012 -1.198 1.778 sum -6.849 -14.594 13.391 20.957 Atomic orbital electron populations 1.21822 0.90481 1.04341 1.03707 1.23289 0.97116 0.79384 1.02447 1.86539 1.24089 1.33585 1.83458 1.24197 0.80595 0.92932 0.70800 1.90627 1.61087 1.44208 1.47040 1.21061 0.95971 0.88390 1.03618 0.86953 1.21432 1.01361 0.95771 0.94762 1.21345 0.94744 0.95789 1.02442 1.21547 0.96774 0.99972 0.96181 1.21571 0.96921 0.92073 0.91745 0.93878 1.60591 1.48740 1.14849 1.07228 1.21782 0.92033 0.92907 0.97497 1.18900 0.95445 0.93950 0.92088 1.21633 1.08360 1.16688 1.11553 0.92307 1.25947 0.97232 1.00207 0.96302 1.70099 1.27892 1.41055 1.18060 0.85460 0.78645 0.78403 0.78604 1.19885 1.20724 1.18743 1.21516 0.92520 0.95777 1.03318 0.91069 0.91593 0.88154 0.91711 0.91089 0.90125 0.90956 0.90738 0.92017 0.90292 0.92893 0.84684 0.92246 0.96821 0.99314 0.98474 0.92795 0.89922 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.29 71.98 0.74 -0.98 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.36 -8.22 10.12 -51.42 -0.52 -8.74 16 4 C 0.47 11.92 7.26 71.24 0.52 12.44 16 5 O -0.54 -16.19 15.73 21.97 0.35 -15.85 16 6 C -0.07 -1.67 2.47 -11.54 -0.03 -1.70 16 7 H 0.11 2.87 7.48 -2.39 -0.02 2.85 16 8 C -0.10 -1.92 5.14 30.59 0.16 -1.76 16 9 C -0.11 -2.38 5.77 30.60 0.18 -2.20 16 10 C -0.11 -2.54 5.53 30.60 0.17 -2.37 16 11 C 0.09 2.32 2.82 44.91 0.13 2.44 16 12 H 0.04 1.19 7.80 -2.38 -0.02 1.18 16 13 N -0.68 -22.84 4.83 -491.57 -2.37 -25.21 16 14 C 0.09 3.57 5.42 86.31 0.47 4.04 16 15 C 0.03 1.78 5.23 29.85 0.16 1.94 16 16 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 17 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.00 0.06 5.46 84.66 0.46 0.52 16 19 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 20 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 C -0.09 -2.26 3.87 30.59 0.12 -2.15 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.72 7.60 -2.39 -0.02 1.70 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.41 7.45 -2.39 -0.02 1.39 16 36 H 0.34 11.24 8.19 -89.70 -0.73 10.50 16 37 H 0.06 2.44 7.43 -2.39 -0.02 2.42 16 38 H 0.01 0.56 8.05 -2.39 -0.02 0.54 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.08 1.87 8.10 -2.39 -0.02 1.86 16 43 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 Total: -1.00 -66.35 345.14 3.74 -62.62 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.23 Total: 16.68 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 3.74 Total: -19.28 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.09 Total: -81.87 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.17 Total: -24.58 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.35 3.74 -62.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255341225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.309 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds