Wall clock time and date at job start Mon Mar 30 2020 01:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47073 * 2 1 4 4 C 1.34236 * 117.00027 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99654 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00216 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46967 * 299.99903 * 6 4 3 8 8 C 1.52998 * 109.47010 * 59.99804 * 6 4 3 9 9 C 1.53004 * 109.46876 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47072 * 300.00068 * 9 8 6 11 11 C 1.52998 * 109.47325 * 60.00207 * 10 9 8 12 12 H 1.09001 * 109.47175 * 59.99868 * 11 10 9 13 13 N 1.46895 * 109.47191 * 180.02562 * 11 10 9 14 14 C 1.46896 * 111.00101 * 274.19431 * 13 11 10 15 15 H 1.09001 * 109.47370 * 33.06436 * 14 13 11 16 16 C 1.53008 * 109.47377 * 153.06269 * 14 13 11 17 17 C 1.50697 * 109.47150 * 273.06352 * 14 13 11 18 18 H 1.07998 * 120.00530 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99892 * 180.27335 * 17 14 13 20 20 N 1.31516 * 119.99595 * 179.72368 * 19 17 14 21 21 Si 1.86800 * 119.99995 * 359.72798 * 19 17 14 22 22 H 1.48493 * 109.47044 * 90.00003 * 21 19 17 23 23 H 1.48500 * 109.46724 * 209.99893 * 21 19 17 24 24 H 1.48500 * 109.47073 * 329.99554 * 21 19 17 25 25 C 1.52998 * 109.47153 * 180.02562 * 6 4 3 26 26 H 1.09000 * 109.47090 * 300.00228 * 1 2 3 27 27 H 1.09003 * 109.47331 * 59.99664 * 1 2 3 28 28 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47024 * 240.00710 * 2 1 3 30 30 H 1.09003 * 109.47331 * 120.00336 * 2 1 3 31 31 H 1.08996 * 109.47631 * 60.00337 * 8 6 4 32 32 H 1.09000 * 109.47510 * 299.99691 * 8 6 4 33 33 H 1.09000 * 109.47488 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47182 * 60.00049 * 9 8 6 35 35 H 1.09001 * 109.47102 * 300.00030 * 10 9 8 36 36 H 1.09000 * 109.47084 * 179.97438 * 10 9 8 37 37 H 1.00905 * 111.00439 * 150.23872 * 13 11 10 38 38 H 1.08998 * 109.46548 * 57.87505 * 16 14 13 39 39 H 1.08995 * 109.47109 * 177.87670 * 16 14 13 40 40 H 1.08995 * 109.46607 * 297.87971 * 16 14 13 41 41 H 0.97005 * 119.99515 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.47443 * 60.00061 * 25 6 4 43 43 H 1.09001 * 109.47102 * 299.99817 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4701 -0.8895 8 6 3.4498 3.6836 1.2499 9 6 4.0341 5.0977 1.2501 10 6 5.5620 5.0181 1.2490 11 6 6.0330 4.2719 -0.0009 12 1 5.6963 4.8043 -0.8904 13 7 7.5000 4.1950 -0.0016 14 6 8.0901 5.4007 -0.5981 15 1 7.4606 6.2620 -0.3746 16 6 9.4875 5.6257 -0.0169 17 6 8.1895 5.2252 -2.0915 18 1 7.8480 4.3097 -2.5516 19 6 8.7211 6.2314 -2.8700 20 7 8.8128 6.0760 -4.1728 21 14 9.3111 7.8151 -2.0744 22 1 10.7438 7.6810 -1.7078 23 1 9.1480 8.9398 -3.0302 24 1 8.5105 8.0836 -0.8529 25 6 5.4487 2.8573 -0.0014 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.7861 3.1510 2.1394 32 1 2.3613 3.7408 1.2504 33 1 3.6983 5.6295 2.1403 34 1 3.6974 5.6301 0.3606 35 1 5.8988 4.4857 2.1385 36 1 5.9783 6.0255 1.2487 37 1 7.8183 3.3636 -0.4766 38 1 10.1058 4.7486 -0.2076 39 1 9.9402 6.4986 -0.4871 40 1 9.4117 5.7901 1.0579 41 1 9.1865 6.7840 -4.7205 42 1 5.7838 2.3259 -0.8921 43 1 5.7854 2.3245 0.8879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255354440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:06 Heat of formation + Delta-G solvation = -108.857078 kcal Electronic energy + Delta-G solvation = -21353.403037 eV Core-core repulsion = 18204.667482 eV Total energy + Delta-G solvation = -3148.735555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69905 -38.43285 -36.60832 -35.35577 -32.46942 -31.93625 -30.84453 -30.48597 -27.05441 -24.91179 -24.67355 -22.81868 -21.89702 -20.83787 -19.77457 -19.45277 -17.59872 -16.85228 -16.62831 -16.39381 -15.05033 -14.94517 -14.42976 -14.28832 -13.99104 -13.62932 -13.46331 -13.07002 -12.97676 -12.62873 -12.41685 -12.15108 -12.10284 -12.01247 -11.78304 -11.39463 -11.28251 -11.05807 -10.84161 -10.76485 -10.66017 -10.47559 -10.37619 -10.06317 -9.98091 -9.80569 -9.48624 -9.20878 -8.59094 -7.37545 -6.11963 -4.12804 2.22615 2.60231 3.26366 3.36050 3.38752 4.37505 4.53248 4.67493 4.69316 4.76579 4.79184 5.04023 5.11329 5.21621 5.27851 5.37806 5.48445 5.51643 5.52410 5.62829 5.66052 5.71394 5.74488 5.95010 6.05449 6.22657 6.23389 6.38464 6.39435 6.42498 6.47737 6.60372 6.64124 6.74744 6.83791 7.04463 7.27880 7.58913 7.76329 8.07363 8.40197 8.51306 8.90826 9.51617 11.01119 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.004114 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.094371 B = 6804.784264 C = 7120.448563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.467 3.533 5 O -0.506 6.506 6 C -0.076 4.076 7 H 0.110 0.890 8 C -0.106 4.106 9 C -0.117 4.117 10 C -0.109 4.109 11 C 0.093 3.907 12 H 0.053 0.947 13 N -0.680 5.680 14 C 0.177 3.823 15 H 0.032 0.968 16 C -0.137 4.137 17 C -0.545 4.545 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.893 3.107 22 H -0.279 1.279 23 H -0.299 1.299 24 H -0.266 1.266 25 C -0.102 4.102 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.337 0.663 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.264 0.736 42 H 0.070 0.930 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.163 -6.687 10.849 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.393 6.393 6 C -0.095 4.095 7 H 0.127 0.873 8 C -0.144 4.144 9 C -0.155 4.155 10 C -0.147 4.147 11 C -0.017 4.017 12 H 0.071 0.929 13 N -0.309 5.309 14 C 0.068 3.932 15 H 0.050 0.950 16 C -0.195 4.195 17 C -0.584 4.584 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.191 1.191 25 C -0.140 4.140 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.837 -6.700 11.326 19.832 hybrid contribution 0.292 0.486 -0.867 1.036 sum -14.546 -6.213 10.459 18.962 Atomic orbital electron populations 1.21798 0.92733 1.02830 1.03520 1.22998 0.95283 0.80637 1.02532 1.86521 1.24957 1.32005 1.84155 1.23980 0.80235 0.92984 0.71854 1.90664 1.60379 1.43224 1.45025 1.21138 0.97224 0.89005 1.02170 0.87250 1.21509 1.00624 0.96424 0.95818 1.21543 0.96468 0.95388 1.02133 1.21583 0.93519 1.00954 0.98662 1.21341 0.89668 0.93614 0.97121 0.92851 1.60792 1.04712 1.06225 1.59217 1.19587 0.91609 0.89252 0.92753 0.94998 1.22027 0.99413 1.00018 0.98044 1.21753 1.42174 1.03937 0.90531 0.90992 1.25020 0.94971 0.98436 0.94682 1.69926 1.45395 1.33820 1.04512 0.86773 0.79332 0.82842 0.78690 1.20557 1.22677 1.19130 1.21629 0.90609 0.98171 1.03600 0.91510 0.91450 0.90385 0.91306 0.91373 0.91528 0.91001 0.91644 0.91612 0.91756 0.91846 0.84556 0.93119 0.94480 0.94788 0.92669 0.91135 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.39 10.12 -39.27 -0.40 -4.79 16 4 C 0.47 6.56 7.26 36.00 0.26 6.82 16 5 O -0.51 -8.49 15.73 -18.75 -0.30 -8.79 16 6 C -0.08 -1.00 2.63 -91.77 -0.24 -1.24 16 7 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 8 C -0.11 -1.20 5.14 -26.73 -0.14 -1.33 16 9 C -0.12 -1.40 5.92 -26.73 -0.16 -1.55 16 10 C -0.11 -1.63 5.42 -26.73 -0.14 -1.78 16 11 C 0.09 1.62 2.30 -67.69 -0.16 1.47 16 12 H 0.05 1.06 7.70 -51.93 -0.40 0.66 16 13 N -0.68 -13.68 6.06 -100.93 -0.61 -14.29 16 14 C 0.18 4.13 1.98 -68.86 -0.14 3.99 16 15 H 0.03 0.77 6.24 -51.93 -0.32 0.45 16 16 C -0.14 -3.04 9.01 37.16 0.33 -2.71 16 17 C -0.55 -15.02 8.95 -34.44 -0.31 -15.32 16 18 H 0.07 2.15 7.96 -52.49 -0.42 1.74 16 19 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 20 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 21 Si 0.89 21.99 24.39 -169.99 -4.15 17.85 16 22 H -0.28 -6.72 6.84 56.52 0.39 -6.34 16 23 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.27 -6.27 6.54 56.52 0.37 -5.91 16 25 C -0.10 -1.59 3.76 -26.70 -0.10 -1.69 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.03 7.51 -51.93 -0.39 0.64 16 37 H 0.34 6.93 7.97 -39.29 -0.31 6.62 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.85 3.22 -51.93 -0.17 0.68 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 43 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -30.91 335.92 -7.41 -38.33 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.53 Total: 4.46 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.27 Total: -11.24 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.16 Total: -40.87 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.69 Total: -13.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.15 Total: 17.85 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.91 -7.41 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255354440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.530 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds