Wall clock time and date at job start Mon Mar 30 2020 01:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47073 * 2 1 4 4 C 1.34236 * 117.00027 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99654 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00216 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46967 * 299.99903 * 6 4 3 8 8 C 1.52998 * 109.47010 * 59.99804 * 6 4 3 9 9 C 1.53004 * 109.46876 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47072 * 300.00068 * 9 8 6 11 11 C 1.52998 * 109.47325 * 60.00207 * 10 9 8 12 12 H 1.09001 * 109.47175 * 59.99868 * 11 10 9 13 13 N 1.46895 * 109.47191 * 180.02562 * 11 10 9 14 14 C 1.46896 * 111.00101 * 274.19431 * 13 11 10 15 15 H 1.09001 * 109.47370 * 33.06436 * 14 13 11 16 16 C 1.53008 * 109.47377 * 153.06269 * 14 13 11 17 17 C 1.50697 * 109.47150 * 273.06352 * 14 13 11 18 18 H 1.07998 * 120.00530 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99892 * 180.27335 * 17 14 13 20 20 N 1.31516 * 119.99595 * 179.72368 * 19 17 14 21 21 Si 1.86800 * 119.99995 * 359.72798 * 19 17 14 22 22 H 1.48493 * 109.47044 * 90.00003 * 21 19 17 23 23 H 1.48500 * 109.46724 * 209.99893 * 21 19 17 24 24 H 1.48500 * 109.47073 * 329.99554 * 21 19 17 25 25 C 1.52998 * 109.47153 * 180.02562 * 6 4 3 26 26 H 1.09000 * 109.47090 * 300.00228 * 1 2 3 27 27 H 1.09003 * 109.47331 * 59.99664 * 1 2 3 28 28 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47024 * 240.00710 * 2 1 3 30 30 H 1.09003 * 109.47331 * 120.00336 * 2 1 3 31 31 H 1.08996 * 109.47631 * 60.00337 * 8 6 4 32 32 H 1.09000 * 109.47510 * 299.99691 * 8 6 4 33 33 H 1.09000 * 109.47488 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47182 * 60.00049 * 9 8 6 35 35 H 1.09001 * 109.47102 * 300.00030 * 10 9 8 36 36 H 1.09000 * 109.47084 * 179.97438 * 10 9 8 37 37 H 1.00905 * 111.00439 * 150.23872 * 13 11 10 38 38 H 1.08998 * 109.46548 * 57.87505 * 16 14 13 39 39 H 1.08995 * 109.47109 * 177.87670 * 16 14 13 40 40 H 1.08995 * 109.46607 * 297.87971 * 16 14 13 41 41 H 0.97005 * 119.99515 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.47443 * 60.00061 * 25 6 4 43 43 H 1.09001 * 109.47102 * 299.99817 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4701 -0.8895 8 6 3.4498 3.6836 1.2499 9 6 4.0341 5.0977 1.2501 10 6 5.5620 5.0181 1.2490 11 6 6.0330 4.2719 -0.0009 12 1 5.6963 4.8043 -0.8904 13 7 7.5000 4.1950 -0.0016 14 6 8.0901 5.4007 -0.5981 15 1 7.4606 6.2620 -0.3746 16 6 9.4875 5.6257 -0.0169 17 6 8.1895 5.2252 -2.0915 18 1 7.8480 4.3097 -2.5516 19 6 8.7211 6.2314 -2.8700 20 7 8.8128 6.0760 -4.1728 21 14 9.3111 7.8151 -2.0744 22 1 10.7438 7.6810 -1.7078 23 1 9.1480 8.9398 -3.0302 24 1 8.5105 8.0836 -0.8529 25 6 5.4487 2.8573 -0.0014 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.7861 3.1510 2.1394 32 1 2.3613 3.7408 1.2504 33 1 3.6983 5.6295 2.1403 34 1 3.6974 5.6301 0.3606 35 1 5.8988 4.4857 2.1385 36 1 5.9783 6.0255 1.2487 37 1 7.8183 3.3636 -0.4766 38 1 10.1058 4.7486 -0.2076 39 1 9.9402 6.4986 -0.4871 40 1 9.4117 5.7901 1.0579 41 1 9.1865 6.7840 -4.7205 42 1 5.7838 2.3259 -0.8921 43 1 5.7854 2.3245 0.8879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255354440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:05 Heat of formation + Delta-G solvation = -128.772824 kcal Electronic energy + Delta-G solvation = -21354.266649 eV Core-core repulsion = 18204.667482 eV Total energy + Delta-G solvation = -3149.599167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.80355 -39.69109 -37.74456 -36.96225 -34.36861 -32.86465 -32.12074 -31.86318 -28.52839 -27.02058 -25.70045 -23.68231 -23.07254 -22.23418 -21.35914 -20.65193 -19.00967 -18.62723 -17.61896 -17.53940 -16.98206 -16.08889 -15.87088 -15.46787 -15.21792 -14.96115 -14.68079 -14.46240 -14.40610 -13.96910 -13.68669 -13.57114 -13.46772 -12.94685 -12.91607 -12.87155 -12.53944 -12.51415 -12.31799 -12.11716 -11.93357 -11.71727 -11.59305 -11.52825 -11.44698 -11.27725 -11.14089 -11.01378 -10.74288 -9.11650 -8.33277 -6.38915 1.11214 1.31260 1.35567 1.46902 1.62160 2.30339 3.02658 3.35528 3.52391 3.71338 3.93057 4.00000 4.08025 4.14893 4.22380 4.33415 4.37612 4.45272 4.48618 4.54359 4.61681 4.71509 4.77588 4.85720 4.92556 4.94295 5.01872 5.11476 5.13559 5.14826 5.18318 5.25127 5.30058 5.36318 5.44631 5.46982 5.54713 5.62010 6.11010 6.42683 6.63351 6.68301 6.78227 7.30115 8.83282 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.004114 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.094371 B = 6804.784264 C = 7120.448563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.356 6.356 4 C 0.471 3.529 5 O -0.540 6.540 6 C -0.074 4.074 7 H 0.114 0.886 8 C -0.098 4.098 9 C -0.111 4.111 10 C -0.104 4.104 11 C 0.092 3.908 12 H 0.025 0.975 13 N -0.673 5.673 14 C 0.183 3.817 15 H 0.031 0.969 16 C -0.135 4.135 17 C -0.546 4.546 18 H 0.030 0.970 19 C 0.013 3.987 20 N -0.948 5.948 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.300 1.300 24 H -0.245 1.245 25 C -0.092 4.092 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.330 0.670 38 H 0.047 0.953 39 H 0.031 0.969 40 H 0.062 0.938 41 H 0.265 0.735 42 H 0.045 0.955 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.612 -5.773 13.378 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.272 6.272 4 C 0.316 3.684 5 O -0.430 6.430 6 C -0.094 4.094 7 H 0.132 0.868 8 C -0.135 4.135 9 C -0.149 4.149 10 C -0.142 4.142 11 C -0.019 4.019 12 H 0.043 0.957 13 N -0.302 5.302 14 C 0.073 3.927 15 H 0.049 0.951 16 C -0.193 4.193 17 C -0.585 4.585 18 H 0.048 0.952 19 C -0.185 4.185 20 N -0.588 5.588 21 Si 0.782 3.218 22 H -0.193 1.193 23 H -0.228 1.228 24 H -0.169 1.169 25 C -0.130 4.130 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.319 -5.792 13.883 22.194 hybrid contribution 0.672 0.062 -1.713 1.841 sum -15.647 -5.730 12.170 20.634 Atomic orbital electron populations 1.21816 0.90106 1.04377 1.03845 1.23314 0.97307 0.79353 1.02393 1.86513 1.23613 1.33594 1.83526 1.24035 0.80722 0.92716 0.70946 1.90654 1.61258 1.44262 1.46783 1.21113 0.95242 0.89205 1.03826 0.86827 1.21504 1.01946 0.95566 0.94525 1.21522 0.93875 0.96056 1.03431 1.21545 0.95920 0.99707 0.97039 1.21445 0.88040 0.94816 0.97554 0.95731 1.60882 1.06472 1.04834 1.57982 1.19463 0.92851 0.90398 0.89981 0.95120 1.21963 0.97955 0.99658 0.99693 1.22052 1.41094 1.02226 0.93131 0.95212 1.25911 0.95278 1.02250 0.95031 1.70077 1.47157 1.35278 1.06305 0.85752 0.79577 0.78085 0.78342 1.19284 1.22772 1.16882 1.21455 0.92693 0.96547 1.02336 0.90844 0.91407 0.88237 0.91915 0.91196 0.90952 0.88678 0.88909 0.91747 0.91034 0.92931 0.85332 0.93385 0.95048 0.91919 0.92567 0.93648 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 10.29 71.98 0.74 -0.90 16 2 C 0.05 0.91 6.19 71.98 0.45 1.36 16 3 O -0.36 -8.20 10.12 -51.47 -0.52 -8.72 16 4 C 0.47 12.96 7.26 71.24 0.52 13.48 16 5 O -0.54 -18.27 15.73 21.94 0.35 -17.93 16 6 C -0.07 -1.90 2.63 -11.54 -0.03 -1.93 16 7 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 8 C -0.10 -1.93 5.14 30.60 0.16 -1.78 16 9 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 10 C -0.10 -2.92 5.42 30.59 0.17 -2.75 16 11 C 0.09 3.20 2.30 44.93 0.10 3.31 16 12 H 0.02 1.00 7.70 -2.39 -0.02 0.98 16 13 N -0.67 -27.23 6.06 -473.23 -2.87 -30.09 16 14 C 0.18 8.47 1.98 44.17 0.09 8.56 16 15 H 0.03 1.45 6.24 -2.39 -0.01 1.43 16 16 C -0.14 -5.73 9.01 71.98 0.65 -5.08 16 17 C -0.55 -30.97 8.95 25.60 0.23 -30.74 16 18 H 0.03 1.88 7.96 -2.91 -0.02 1.86 16 19 C 0.01 0.77 5.45 84.66 0.46 1.23 16 20 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 21 Si 0.96 44.95 24.39 68.60 1.67 46.62 16 22 H -0.27 -12.00 6.84 99.48 0.68 -11.31 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 25 C -0.09 -2.92 3.76 30.61 0.12 -2.80 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.22 8.13 -2.38 -0.02 1.20 16 30 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.59 7.51 -2.39 -0.02 1.58 16 37 H 0.33 14.06 7.97 -89.69 -0.72 13.34 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.03 1.36 3.22 -2.39 -0.01 1.35 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 42 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 43 H 0.07 2.36 8.10 -2.39 -0.02 2.34 16 Total: -1.00 -68.36 335.92 2.93 -65.44 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.18 Total: 24.08 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 3.82 Total: -20.19 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.57 Total: -89.30 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.18 Total: -26.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.67 Total: 46.62 kcal Total: -68.36 2.93 -65.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255354440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.338 kcal (2) G-P(sol) polarization free energy of solvation -68.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds