Wall clock time and date at job start Mon Mar 30 2020 01:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47303 * 300.00327 * 6 4 3 8 8 C 1.53000 * 109.46900 * 60.00293 * 6 4 3 9 9 C 1.53002 * 109.47130 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47284 * 300.00135 * 9 8 6 11 11 C 1.53000 * 109.46830 * 59.99666 * 10 9 8 12 12 H 1.09005 * 109.46870 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47154 * 60.00316 * 11 10 9 14 14 C 1.46898 * 111.00123 * 84.99483 * 13 11 10 15 15 H 1.08996 * 109.47213 * 325.00184 * 14 13 11 16 16 C 1.53004 * 109.46891 * 85.00293 * 14 13 11 17 17 C 1.50705 * 109.47439 * 204.99956 * 14 13 11 18 18 H 1.08002 * 119.99522 * 0.02562 * 17 14 13 19 19 C 1.37868 * 120.00121 * 180.02562 * 17 14 13 20 20 N 1.31510 * 120.00481 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99904 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47010 * 90.00276 * 21 19 17 23 23 H 1.48502 * 109.47135 * 210.00046 * 21 19 17 24 24 H 1.48502 * 109.47221 * 330.00034 * 21 19 17 25 25 C 1.52994 * 109.47562 * 300.00039 * 11 10 9 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 31 31 H 1.08998 * 109.47349 * 299.99708 * 8 6 4 32 32 H 1.09000 * 109.47115 * 59.99918 * 8 6 4 33 33 H 1.09000 * 109.46905 * 60.00137 * 9 8 6 34 34 H 1.09003 * 109.47012 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.46843 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46705 * 300.00146 * 10 9 8 37 37 H 1.00895 * 111.00023 * 208.95141 * 13 11 10 38 38 H 1.08996 * 109.47281 * 59.99933 * 16 14 13 39 39 H 1.09005 * 109.46842 * 180.02562 * 16 14 13 40 40 H 1.09000 * 109.46848 * 299.99819 * 16 14 13 41 41 H 0.96998 * 120.00698 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.47007 * 300.00175 * 25 11 10 43 43 H 1.09003 * 109.47577 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 -0.8904 8 6 3.4486 3.6850 1.2486 9 6 4.0339 5.0986 1.2484 10 6 5.5618 5.0181 1.2494 11 6 6.0339 4.2704 0.0008 12 1 7.1224 4.2134 0.0013 13 7 5.5822 4.9872 -1.1992 14 6 6.5236 6.0556 -1.5599 15 1 6.9414 6.4931 -0.6532 16 6 7.6529 5.4738 -2.4126 17 6 5.7996 7.1199 -2.3436 18 1 4.7453 7.0133 -2.5525 19 6 6.4830 8.2293 -2.7940 20 7 7.7666 8.3593 -2.5392 21 14 5.5853 9.5488 -3.7648 22 1 5.0443 10.5687 -2.8309 23 1 6.5294 10.1956 -4.7112 24 1 4.4686 8.9311 -4.5243 25 6 5.4487 2.8568 0.0010 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.3601 3.7421 1.2481 32 1 3.7842 3.1533 2.1390 33 1 3.6987 5.6305 0.3580 34 1 3.6972 5.6314 2.1378 35 1 5.9787 6.0251 1.2489 36 1 5.8970 4.4861 2.1399 37 1 5.4446 4.3510 -1.9701 38 1 7.2351 5.0363 -3.3193 39 1 8.3518 6.2665 -2.6799 40 1 8.1766 4.7041 -1.8457 41 1 8.2475 9.1397 -2.8563 42 1 5.7839 2.3249 0.8914 43 1 5.7853 2.3240 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255354441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:08 Heat of formation + Delta-G solvation = -112.248795 kcal Electronic energy + Delta-G solvation = -21537.393407 eV Core-core repulsion = 18388.510776 eV Total energy + Delta-G solvation = -3148.882631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65078 -38.47659 -36.55844 -34.94483 -32.41700 -31.84568 -30.69638 -29.77302 -26.64565 -25.09319 -24.58479 -22.76169 -21.97689 -20.78805 -20.19505 -18.53231 -17.62269 -16.60893 -16.53289 -16.08452 -15.01454 -14.74521 -14.41146 -14.20928 -13.76803 -13.66560 -13.22386 -12.94949 -12.60546 -12.34042 -12.14477 -12.00141 -11.89391 -11.79293 -11.62231 -11.40812 -11.04573 -10.88344 -10.85616 -10.64308 -10.55081 -10.45174 -10.19276 -10.08895 -9.89775 -9.81354 -9.60739 -8.93942 -8.33130 -7.19624 -5.95905 -3.98854 2.28889 2.68839 3.34088 3.40519 3.44264 4.45767 4.63339 4.73245 4.81240 4.88463 4.95950 5.07024 5.30457 5.34932 5.36459 5.51666 5.56384 5.57499 5.64917 5.72847 5.77256 5.79570 5.88812 6.03828 6.22931 6.28583 6.33858 6.48111 6.56236 6.61199 6.73095 6.77254 6.86976 6.96467 7.15681 7.42181 7.77229 7.82141 7.92080 8.31714 8.56911 8.65663 9.08566 9.66562 11.11132 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.004267 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.907700 B = 6560.861683 C = 6875.520284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.465 3.535 5 O -0.515 6.515 6 C -0.071 4.071 7 H 0.122 0.878 8 C -0.102 4.102 9 C -0.107 4.107 10 C -0.105 4.105 11 C 0.086 3.914 12 H 0.041 0.959 13 N -0.676 5.676 14 C 0.212 3.788 15 H 0.035 0.965 16 C -0.170 4.170 17 C -0.492 4.492 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.895 3.105 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.275 1.275 25 C -0.100 4.100 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.324 0.676 38 H 0.026 0.974 39 H 0.088 0.912 40 H 0.004 0.996 41 H 0.259 0.741 42 H 0.067 0.933 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 -12.923 7.002 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.403 6.403 6 C -0.090 4.090 7 H 0.139 0.861 8 C -0.139 4.139 9 C -0.145 4.145 10 C -0.143 4.143 11 C -0.024 4.024 12 H 0.059 0.941 13 N -0.307 5.307 14 C 0.104 3.896 15 H 0.053 0.947 16 C -0.229 4.229 17 C -0.531 4.531 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.724 3.276 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.200 1.200 25 C -0.138 4.138 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.141 0.859 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.023 0.977 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.475 -12.689 7.325 18.011 hybrid contribution 0.494 -0.038 -0.982 1.100 sum -9.982 -12.727 6.343 17.374 Atomic orbital electron populations 1.21796 0.92752 1.02746 1.03616 1.22977 0.95317 0.80808 1.02345 1.86548 1.25042 1.31777 1.84020 1.24257 0.80173 0.93251 0.71414 1.90630 1.60458 1.43474 1.45734 1.21095 0.96525 0.88210 1.03170 0.86060 1.21464 1.00566 0.96939 0.94981 1.21382 0.95565 0.94829 1.02709 1.21507 0.96009 1.00877 0.95949 1.21430 0.96704 0.90883 0.93398 0.94097 1.60884 1.50381 1.14173 1.05240 1.19186 0.87642 0.88034 0.94710 0.94735 1.22444 1.02020 0.99656 0.98801 1.21152 0.95853 1.03200 1.32867 0.91981 1.24942 0.94870 0.98220 0.96528 1.69881 1.07765 1.29037 1.47128 0.86543 0.79387 0.81869 0.79817 1.20827 1.21534 1.19989 1.21620 0.91956 0.97485 1.02736 0.90473 0.91487 0.91385 0.91426 0.91514 0.91272 0.92530 0.89296 0.92822 0.91361 0.93250 0.85941 0.95445 0.89365 0.97691 0.93152 0.91398 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.59 10.12 -39.26 -0.40 -4.99 16 4 C 0.47 6.69 7.26 36.01 0.26 6.95 16 5 O -0.52 -8.54 15.73 -18.75 -0.29 -8.84 16 6 C -0.07 -0.99 2.47 -91.77 -0.23 -1.22 16 7 H 0.12 1.76 7.48 -51.93 -0.39 1.37 16 8 C -0.10 -1.30 5.14 -26.73 -0.14 -1.44 16 9 C -0.11 -1.55 5.77 -26.73 -0.15 -1.70 16 10 C -0.11 -1.67 5.52 -26.73 -0.15 -1.82 16 11 C 0.09 1.47 2.63 -67.72 -0.18 1.29 16 12 H 0.04 0.75 7.11 -51.93 -0.37 0.39 16 13 N -0.68 -13.29 4.56 -100.95 -0.46 -13.75 16 14 C 0.21 5.11 2.38 -68.86 -0.16 4.95 16 15 H 0.03 0.92 7.11 -51.93 -0.37 0.55 16 16 C -0.17 -4.04 8.92 37.16 0.33 -3.71 16 17 C -0.49 -13.20 8.84 -34.44 -0.30 -13.50 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 20 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 21 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.10 -1.49 3.87 -26.73 -0.10 -1.60 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.48 7.60 -51.93 -0.39 1.09 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.32 6.20 7.93 -39.29 -0.31 5.88 16 38 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 39 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 40 H 0.00 0.09 7.42 -51.93 -0.39 -0.30 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 43 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -28.86 338.98 -8.27 -37.13 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.53 Total: 4.22 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -0.31 Total: -10.30 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.17 Total: -38.60 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.69 Total: -13.82 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.86 -8.27 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255354441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.120 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds