Wall clock time and date at job start Mon Mar 30 2020 01:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47303 * 300.00327 * 6 4 3 8 8 C 1.53000 * 109.46900 * 60.00293 * 6 4 3 9 9 C 1.53002 * 109.47130 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47284 * 300.00135 * 9 8 6 11 11 C 1.53000 * 109.46830 * 59.99666 * 10 9 8 12 12 H 1.09005 * 109.46870 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47154 * 60.00316 * 11 10 9 14 14 C 1.46898 * 111.00123 * 84.99483 * 13 11 10 15 15 H 1.08996 * 109.47213 * 325.00184 * 14 13 11 16 16 C 1.53004 * 109.46891 * 85.00293 * 14 13 11 17 17 C 1.50705 * 109.47439 * 204.99956 * 14 13 11 18 18 H 1.08002 * 119.99522 * 0.02562 * 17 14 13 19 19 C 1.37868 * 120.00121 * 180.02562 * 17 14 13 20 20 N 1.31510 * 120.00481 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99904 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47010 * 90.00276 * 21 19 17 23 23 H 1.48502 * 109.47135 * 210.00046 * 21 19 17 24 24 H 1.48502 * 109.47221 * 330.00034 * 21 19 17 25 25 C 1.52994 * 109.47562 * 300.00039 * 11 10 9 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 31 31 H 1.08998 * 109.47349 * 299.99708 * 8 6 4 32 32 H 1.09000 * 109.47115 * 59.99918 * 8 6 4 33 33 H 1.09000 * 109.46905 * 60.00137 * 9 8 6 34 34 H 1.09003 * 109.47012 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.46843 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46705 * 300.00146 * 10 9 8 37 37 H 1.00895 * 111.00023 * 208.95141 * 13 11 10 38 38 H 1.08996 * 109.47281 * 59.99933 * 16 14 13 39 39 H 1.09005 * 109.46842 * 180.02562 * 16 14 13 40 40 H 1.09000 * 109.46848 * 299.99819 * 16 14 13 41 41 H 0.96998 * 120.00698 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.47007 * 300.00175 * 25 11 10 43 43 H 1.09003 * 109.47577 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 -0.8904 8 6 3.4486 3.6850 1.2486 9 6 4.0339 5.0986 1.2484 10 6 5.5618 5.0181 1.2494 11 6 6.0339 4.2704 0.0008 12 1 7.1224 4.2134 0.0013 13 7 5.5822 4.9872 -1.1992 14 6 6.5236 6.0556 -1.5599 15 1 6.9414 6.4931 -0.6532 16 6 7.6529 5.4738 -2.4126 17 6 5.7996 7.1199 -2.3436 18 1 4.7453 7.0133 -2.5525 19 6 6.4830 8.2293 -2.7940 20 7 7.7666 8.3593 -2.5392 21 14 5.5853 9.5488 -3.7648 22 1 5.0443 10.5687 -2.8309 23 1 6.5294 10.1956 -4.7112 24 1 4.4686 8.9311 -4.5243 25 6 5.4487 2.8568 0.0010 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.3601 3.7421 1.2481 32 1 3.7842 3.1533 2.1390 33 1 3.6987 5.6305 0.3580 34 1 3.6972 5.6314 2.1378 35 1 5.9787 6.0251 1.2489 36 1 5.8970 4.4861 2.1399 37 1 5.4446 4.3510 -1.9701 38 1 7.2351 5.0363 -3.3193 39 1 8.3518 6.2665 -2.6799 40 1 8.1766 4.7041 -1.8457 41 1 8.2475 9.1397 -2.8563 42 1 5.7839 2.3249 0.8914 43 1 5.7853 2.3240 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255354441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:07 Heat of formation + Delta-G solvation = -127.817000 kcal Electronic energy + Delta-G solvation = -21538.068495 eV Core-core repulsion = 18388.510776 eV Total energy + Delta-G solvation = -3149.557719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76647 -39.77550 -37.67432 -36.63064 -34.18513 -32.75988 -31.83321 -31.34220 -28.29855 -27.16918 -25.63592 -23.65219 -23.20570 -22.36129 -21.58019 -19.89680 -18.81103 -18.19820 -17.55764 -17.53708 -16.67698 -16.20315 -15.87879 -15.37147 -15.05375 -15.00602 -14.47106 -14.07785 -13.78779 -13.74839 -13.61247 -13.30051 -13.14024 -12.97710 -12.86089 -12.79997 -12.68260 -12.49453 -12.35113 -12.16265 -12.11151 -11.85026 -11.57900 -11.50376 -11.34580 -11.12792 -10.95195 -10.88834 -10.43058 -8.87057 -8.04763 -6.14755 1.16954 1.45537 1.46385 1.56545 1.70479 2.47542 3.24306 3.54713 3.62885 3.79022 3.94846 4.02640 4.10677 4.17535 4.34268 4.37255 4.39818 4.50515 4.59827 4.71832 4.76062 4.78575 4.87603 4.92180 4.94528 5.01446 5.09424 5.12448 5.16027 5.20047 5.31597 5.39922 5.44752 5.48986 5.51373 5.72256 5.76602 5.89127 6.34037 6.70984 6.74673 6.90503 7.01673 7.55242 9.00872 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.004267 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.907700 B = 6560.861683 C = 6875.520284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.359 6.359 4 C 0.472 3.528 5 O -0.540 6.540 6 C -0.068 4.068 7 H 0.116 0.884 8 C -0.093 4.093 9 C -0.101 4.101 10 C -0.104 4.104 11 C 0.087 3.913 12 H 0.025 0.975 13 N -0.670 5.670 14 C 0.220 3.780 15 H 0.004 0.996 16 C -0.159 4.159 17 C -0.506 4.506 18 H 0.057 0.943 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.268 1.268 25 C -0.090 4.090 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.328 0.672 38 H 0.030 0.970 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.258 0.742 42 H 0.077 0.923 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.237 -13.830 7.510 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.275 6.275 4 C 0.317 3.683 5 O -0.430 6.430 6 C -0.088 4.088 7 H 0.133 0.867 8 C -0.131 4.131 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.023 4.023 12 H 0.043 0.957 13 N -0.300 5.300 14 C 0.111 3.889 15 H 0.022 0.978 16 C -0.218 4.218 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.783 3.217 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.193 1.193 25 C -0.128 4.128 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.345 -13.607 7.838 19.974 hybrid contribution 1.053 0.184 -1.108 1.540 sum -11.292 -13.423 6.729 18.788 Atomic orbital electron populations 1.21818 0.90412 1.04320 1.03732 1.23293 0.97147 0.79418 1.02429 1.86539 1.23966 1.33550 1.83477 1.24158 0.80600 0.92818 0.70756 1.90623 1.61129 1.44193 1.47074 1.21025 0.95655 0.88418 1.03655 0.86663 1.21413 1.01377 0.95500 0.94775 1.21299 0.94251 0.95988 1.02359 1.21500 0.97216 0.99305 0.96232 1.21469 0.95995 0.92178 0.92641 0.95654 1.60765 1.49088 1.13949 1.06194 1.18903 0.88102 0.88883 0.93010 0.97769 1.22280 1.01404 0.99079 0.99074 1.21460 0.95798 1.04175 1.33031 0.92426 1.25690 0.95551 1.00289 0.97530 1.70014 1.09004 1.29567 1.48035 0.85570 0.78335 0.79282 0.78468 1.20429 1.21394 1.19292 1.21477 0.92795 0.95596 1.02909 0.88175 0.91113 0.91483 0.91656 0.91216 0.89754 0.91188 0.91787 0.91068 0.94261 0.90908 0.85507 0.95094 0.92167 0.96046 0.93244 0.90473 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.29 71.98 0.74 -1.02 16 2 C 0.05 0.93 6.19 71.98 0.45 1.37 16 3 O -0.36 -8.52 10.12 -51.42 -0.52 -9.04 16 4 C 0.47 12.77 7.26 71.24 0.52 13.28 16 5 O -0.54 -17.17 15.73 21.97 0.35 -16.82 16 6 C -0.07 -1.80 2.47 -11.54 -0.03 -1.83 16 7 H 0.12 3.21 7.48 -2.39 -0.02 3.19 16 8 C -0.09 -2.16 5.14 30.59 0.16 -2.00 16 9 C -0.10 -2.78 5.77 30.60 0.18 -2.61 16 10 C -0.10 -3.26 5.52 30.60 0.17 -3.09 16 11 C 0.09 2.95 2.63 44.91 0.12 3.07 16 12 H 0.03 0.94 7.11 -2.38 -0.02 0.93 16 13 N -0.67 -26.48 4.56 -473.31 -2.16 -28.63 16 14 C 0.22 10.82 2.38 44.17 0.11 10.92 16 15 H 0.00 0.24 7.11 -2.39 -0.02 0.22 16 16 C -0.16 -7.67 8.92 71.98 0.64 -7.02 16 17 C -0.51 -27.46 8.84 25.60 0.23 -27.23 16 18 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 19 C 0.01 0.39 5.30 84.65 0.45 0.83 16 20 N -0.93 -53.42 11.32 21.44 0.24 -53.18 16 21 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C -0.09 -2.58 3.87 30.59 0.12 -2.46 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 31 H 0.08 1.75 8.11 -2.39 -0.02 1.73 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 2.09 7.60 -2.39 -0.02 2.08 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.44 7.42 -2.39 -0.02 1.42 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.33 12.50 7.93 -89.70 -0.71 11.78 16 38 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 39 H 0.06 3.26 6.07 -2.38 -0.01 3.25 16 40 H 0.02 0.91 7.42 -2.39 -0.02 0.90 16 41 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 43 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 Total: -1.00 -61.79 338.98 4.04 -57.75 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.26 Total: 21.89 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 3.84 Total: -17.77 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -1.91 Total: -81.81 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.17 Total: -25.86 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -61.79 4.04 -57.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255354441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.065 kcal (2) G-P(sol) polarization free energy of solvation -61.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds