Wall clock time and date at job start Mon Mar 30 2020 01:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47120 * 59.99588 * 6 4 3 8 8 C 1.52999 * 109.46961 * 300.00186 * 6 4 3 9 9 C 1.53005 * 109.47159 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47452 * 59.99536 * 9 8 6 11 11 C 1.53002 * 109.46817 * 300.00239 * 10 9 8 12 12 H 1.08992 * 109.47063 * 299.99823 * 11 10 9 13 13 N 1.46901 * 109.46860 * 179.97438 * 11 10 9 14 14 C 1.46900 * 110.99890 * 85.00127 * 13 11 10 15 15 H 1.09007 * 109.46815 * 324.99769 * 14 13 11 16 16 C 1.52997 * 109.47447 * 84.99592 * 14 13 11 17 17 C 1.50700 * 109.47408 * 205.00022 * 14 13 11 18 18 H 1.08005 * 119.99827 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00436 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00045 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00146 * 179.97438 * 19 17 14 22 22 H 1.48492 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47097 * 120.00459 * 21 19 17 24 24 H 1.48507 * 109.47304 * 240.00334 * 21 19 17 25 25 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 26 26 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 28 28 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 29 29 H 1.08998 * 109.47407 * 240.00533 * 2 1 3 30 30 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 31 31 H 1.09000 * 109.47486 * 59.99568 * 8 6 4 32 32 H 1.09002 * 109.46716 * 299.99650 * 8 6 4 33 33 H 1.09002 * 109.46935 * 299.99411 * 9 8 6 34 34 H 1.09001 * 109.46812 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.47194 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46695 * 59.99734 * 10 9 8 37 37 H 1.00902 * 111.00452 * 208.95417 * 13 11 10 38 38 H 1.09001 * 109.46972 * 300.00597 * 16 14 13 39 39 H 1.09007 * 109.46968 * 60.00271 * 16 14 13 40 40 H 1.08997 * 109.47366 * 180.02562 * 16 14 13 41 41 H 0.96996 * 120.00310 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47153 * 59.99773 * 25 6 4 43 43 H 1.09001 * 109.46832 * 299.99964 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4692 0.8904 8 6 3.4485 3.6852 -1.2485 9 6 4.0338 5.0988 -1.2483 10 6 5.5617 5.0183 -1.2494 11 6 6.0337 4.2707 -0.0008 12 1 5.6986 4.8025 0.8896 13 7 7.5007 4.1928 -0.0021 14 6 8.0927 5.4059 0.5774 15 1 7.4817 6.2695 0.3148 16 6 8.1522 5.2673 2.0999 17 6 9.4863 5.5931 0.0353 18 1 9.8915 4.8822 -0.6697 19 6 10.2437 6.6724 0.4383 20 7 9.7501 7.5384 1.2963 21 14 11.9713 6.9040 -0.2332 22 1 12.2885 5.8004 -1.1748 23 1 12.0546 8.2031 -0.9478 24 1 12.9442 6.8930 0.8888 25 6 5.4486 2.8575 -0.0001 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.3600 3.7422 -1.2480 32 1 3.7841 3.1535 -2.1390 33 1 3.6986 5.6307 -0.3579 34 1 3.6977 5.6313 -2.1381 35 1 5.9786 6.0254 -1.2497 36 1 5.8968 4.4864 -2.1398 37 1 7.8195 3.3676 0.4832 38 1 7.1442 5.1319 2.4920 39 1 8.7632 4.4037 2.3626 40 1 8.5910 6.1676 2.5299 41 1 10.2831 8.2975 1.5801 42 1 5.7845 2.3257 -0.8903 43 1 5.7846 2.3250 0.8896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255354442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:10 Heat of formation + Delta-G solvation = -114.244696 kcal Electronic energy + Delta-G solvation = -21190.571385 eV Core-core repulsion = 18041.602205 eV Total energy + Delta-G solvation = -3148.969180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75172 -38.44311 -36.65060 -35.23455 -32.54370 -31.96690 -30.84402 -29.77467 -26.51667 -25.09489 -24.68309 -22.85414 -21.88163 -20.93766 -19.77225 -19.50330 -17.64783 -16.68222 -16.53967 -16.10204 -14.98653 -14.77477 -14.45692 -14.27147 -13.93983 -13.66390 -13.50658 -13.05913 -12.86846 -12.52309 -12.35470 -12.10157 -11.90309 -11.69289 -11.53678 -11.34196 -11.05288 -10.94718 -10.80154 -10.73309 -10.67510 -10.52131 -10.27182 -10.24415 -10.03779 -9.93146 -9.61858 -8.91673 -8.32914 -7.19202 -5.95346 -3.97958 2.16760 2.55079 3.33810 3.41529 3.47359 4.45986 4.49294 4.64838 4.69251 4.72779 4.76388 4.99514 5.11505 5.28980 5.36182 5.38458 5.45334 5.48095 5.52336 5.62742 5.66551 5.67502 5.74311 5.91578 6.06198 6.18891 6.29863 6.33480 6.39989 6.48815 6.70637 6.72963 6.84259 6.87899 7.15588 7.42938 7.70668 7.77987 7.94050 8.32714 8.59405 8.67618 9.10125 9.67430 11.11810 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040983 B = 0.003521 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.043203 B = 7950.831483 C = 8152.326939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.466 3.534 5 O -0.506 6.506 6 C -0.075 4.075 7 H 0.107 0.893 8 C -0.107 4.107 9 C -0.117 4.117 10 C -0.108 4.108 11 C 0.091 3.909 12 H 0.036 0.964 13 N -0.680 5.680 14 C 0.212 3.788 15 H 0.035 0.965 16 C -0.170 4.170 17 C -0.492 4.492 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.896 3.104 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.286 1.286 25 C -0.103 4.103 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.326 0.674 38 H 0.004 0.996 39 H 0.027 0.973 40 H 0.088 0.912 41 H 0.258 0.742 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.112 -10.004 -2.418 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.393 6.393 6 C -0.095 4.095 7 H 0.125 0.875 8 C -0.145 4.145 9 C -0.155 4.155 10 C -0.147 4.147 11 C -0.019 4.019 12 H 0.054 0.946 13 N -0.310 5.310 14 C 0.104 3.896 15 H 0.053 0.947 16 C -0.229 4.229 17 C -0.531 4.531 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.141 4.141 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.023 0.977 39 H 0.046 0.954 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.785 -9.937 -2.986 20.590 hybrid contribution 0.783 -0.146 0.811 1.137 sum -17.002 -10.083 -2.175 19.886 Atomic orbital electron populations 1.21799 0.92701 1.02858 1.03530 1.23004 0.95308 0.80602 1.02535 1.86524 1.24941 1.32034 1.84136 1.23992 0.80250 0.92992 0.71875 1.90664 1.60376 1.43235 1.45025 1.21140 0.97219 0.88960 1.02158 0.87531 1.21524 1.00550 0.96579 0.95799 1.21557 0.96746 0.95152 1.02054 1.21564 0.93000 1.01524 0.98573 1.21368 0.90593 0.93201 0.96769 0.94562 1.60828 1.03221 1.06540 1.60429 1.19202 0.94780 0.86878 0.88738 0.94716 1.22445 0.96547 1.02693 1.01216 1.21216 0.98393 1.08748 1.24723 0.91925 1.24949 0.98342 0.95998 0.95332 1.69893 1.37112 1.13839 1.33015 0.86473 0.84475 0.77930 0.78709 1.19748 1.21196 1.21270 1.21640 0.90563 0.98312 1.03591 0.90360 0.91487 0.91458 0.91318 0.91352 0.91041 0.91431 0.91879 0.91541 0.91233 0.91562 0.85647 0.97705 0.95391 0.89308 0.93202 0.90405 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.18 10.12 -39.26 -0.40 -4.58 16 4 C 0.47 6.26 7.26 36.00 0.26 6.52 16 5 O -0.51 -8.18 15.73 -18.75 -0.29 -8.48 16 6 C -0.08 -0.95 2.63 -91.78 -0.24 -1.19 16 7 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 8 C -0.11 -1.21 5.14 -26.73 -0.14 -1.34 16 9 C -0.12 -1.44 5.92 -26.73 -0.16 -1.59 16 10 C -0.11 -1.74 5.41 -26.73 -0.14 -1.89 16 11 C 0.09 1.58 2.30 -67.74 -0.16 1.43 16 12 H 0.04 0.66 7.11 -51.93 -0.37 0.29 16 13 N -0.68 -14.37 6.04 -100.98 -0.61 -14.98 16 14 C 0.21 5.28 2.38 -68.87 -0.16 5.12 16 15 H 0.03 0.95 7.11 -51.93 -0.37 0.58 16 16 C -0.17 -4.10 8.92 37.16 0.33 -3.77 16 17 C -0.49 -13.66 8.84 -34.44 -0.30 -13.96 16 18 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 19 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 20 N -0.90 -25.77 11.32 55.43 0.63 -25.15 16 21 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C -0.10 -1.55 3.76 -26.76 -0.10 -1.65 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.27 7.43 -51.93 -0.39 0.89 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.33 6.70 8.09 -39.29 -0.32 6.38 16 38 H 0.00 0.09 7.43 -51.93 -0.39 -0.30 16 39 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 40 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -30.05 341.60 -8.44 -38.49 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.60 Total: 3.63 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.30 Total: -10.73 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.02 Total: -40.13 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.69 Total: -13.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.05 -8.44 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255354442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.751 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds