Wall clock time and date at job start Mon Mar 30 2020 01:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47120 * 59.99588 * 6 4 3 8 8 C 1.52999 * 109.46961 * 300.00186 * 6 4 3 9 9 C 1.53005 * 109.47159 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47452 * 59.99536 * 9 8 6 11 11 C 1.53002 * 109.46817 * 300.00239 * 10 9 8 12 12 H 1.08992 * 109.47063 * 299.99823 * 11 10 9 13 13 N 1.46901 * 109.46860 * 179.97438 * 11 10 9 14 14 C 1.46900 * 110.99890 * 85.00127 * 13 11 10 15 15 H 1.09007 * 109.46815 * 324.99769 * 14 13 11 16 16 C 1.52997 * 109.47447 * 84.99592 * 14 13 11 17 17 C 1.50700 * 109.47408 * 205.00022 * 14 13 11 18 18 H 1.08005 * 119.99827 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00436 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00045 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00146 * 179.97438 * 19 17 14 22 22 H 1.48492 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47097 * 120.00459 * 21 19 17 24 24 H 1.48507 * 109.47304 * 240.00334 * 21 19 17 25 25 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 26 26 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 28 28 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 29 29 H 1.08998 * 109.47407 * 240.00533 * 2 1 3 30 30 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 31 31 H 1.09000 * 109.47486 * 59.99568 * 8 6 4 32 32 H 1.09002 * 109.46716 * 299.99650 * 8 6 4 33 33 H 1.09002 * 109.46935 * 299.99411 * 9 8 6 34 34 H 1.09001 * 109.46812 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.47194 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46695 * 59.99734 * 10 9 8 37 37 H 1.00902 * 111.00452 * 208.95417 * 13 11 10 38 38 H 1.09001 * 109.46972 * 300.00597 * 16 14 13 39 39 H 1.09007 * 109.46968 * 60.00271 * 16 14 13 40 40 H 1.08997 * 109.47366 * 180.02562 * 16 14 13 41 41 H 0.96996 * 120.00310 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47153 * 59.99773 * 25 6 4 43 43 H 1.09001 * 109.46832 * 299.99964 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4692 0.8904 8 6 3.4485 3.6852 -1.2485 9 6 4.0338 5.0988 -1.2483 10 6 5.5617 5.0183 -1.2494 11 6 6.0337 4.2707 -0.0008 12 1 5.6986 4.8025 0.8896 13 7 7.5007 4.1928 -0.0021 14 6 8.0927 5.4059 0.5774 15 1 7.4817 6.2695 0.3148 16 6 8.1522 5.2673 2.0999 17 6 9.4863 5.5931 0.0353 18 1 9.8915 4.8822 -0.6697 19 6 10.2437 6.6724 0.4383 20 7 9.7501 7.5384 1.2963 21 14 11.9713 6.9040 -0.2332 22 1 12.2885 5.8004 -1.1748 23 1 12.0546 8.2031 -0.9478 24 1 12.9442 6.8930 0.8888 25 6 5.4486 2.8575 -0.0001 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.3600 3.7422 -1.2480 32 1 3.7841 3.1535 -2.1390 33 1 3.6986 5.6307 -0.3579 34 1 3.6977 5.6313 -2.1381 35 1 5.9786 6.0254 -1.2497 36 1 5.8968 4.4864 -2.1398 37 1 7.8195 3.3676 0.4832 38 1 7.1442 5.1319 2.4920 39 1 8.7632 4.4037 2.3626 40 1 8.5910 6.1676 2.5299 41 1 10.2831 8.2975 1.5801 42 1 5.7845 2.3257 -0.8903 43 1 5.7846 2.3250 0.8896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255354442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:09 Heat of formation + Delta-G solvation = -131.698146 kcal Electronic energy + Delta-G solvation = -21191.328224 eV Core-core repulsion = 18041.602205 eV Total energy + Delta-G solvation = -3149.726018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79292 -39.69713 -37.72003 -36.88475 -34.37903 -32.79984 -31.90174 -31.39944 -28.14672 -27.20929 -25.69304 -23.69311 -23.09727 -22.36229 -21.29761 -20.72780 -18.76420 -18.24246 -17.59082 -17.47876 -16.74903 -16.06372 -15.90401 -15.43425 -15.22699 -14.97349 -14.48210 -14.39945 -14.23873 -13.64455 -13.59383 -13.31769 -13.18492 -12.93229 -12.88792 -12.84505 -12.52393 -12.44236 -12.29109 -12.20089 -12.11343 -12.01642 -11.65020 -11.54111 -11.45253 -11.30804 -11.01912 -10.91612 -10.46960 -8.93822 -8.08554 -6.18876 1.12878 1.41647 1.43554 1.55879 1.63527 2.44942 3.19798 3.41897 3.54340 3.71182 3.96766 4.01560 4.09234 4.15574 4.21686 4.34720 4.39847 4.45403 4.47818 4.52397 4.66847 4.75545 4.86184 4.89432 4.93903 5.02561 5.05407 5.11952 5.14889 5.15746 5.23165 5.29811 5.38960 5.45192 5.47743 5.56363 5.71477 5.86919 6.30978 6.68392 6.70691 6.87046 6.97061 7.51109 8.97203 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040983 B = 0.003521 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.043203 B = 7950.831483 C = 8152.326939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.356 6.356 4 C 0.472 3.528 5 O -0.539 6.539 6 C -0.072 4.072 7 H 0.124 0.876 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.106 4.106 11 C 0.092 3.908 12 H 0.030 0.970 13 N -0.687 5.687 14 C 0.220 3.780 15 H 0.007 0.993 16 C -0.158 4.158 17 C -0.513 4.513 18 H 0.052 0.948 19 C 0.009 3.991 20 N -0.922 5.922 21 Si 0.958 3.042 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.092 4.092 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.059 0.941 37 H 0.329 0.671 38 H 0.025 0.975 39 H 0.029 0.971 40 H 0.062 0.938 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.716 -10.542 -2.810 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.316 3.684 5 O -0.429 6.429 6 C -0.091 4.091 7 H 0.141 0.859 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.144 4.144 11 C -0.018 4.018 12 H 0.048 0.952 13 N -0.317 5.317 14 C 0.111 3.889 15 H 0.025 0.975 16 C -0.217 4.217 17 C -0.552 4.552 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.563 5.563 21 Si 0.785 3.215 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.130 4.130 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.421 -10.479 -3.382 22.325 hybrid contribution 1.229 -0.017 0.933 1.543 sum -18.192 -10.496 -2.449 21.145 Atomic orbital electron populations 1.21817 0.90198 1.04344 1.03838 1.23306 0.97239 0.79364 1.02410 1.86515 1.23651 1.33554 1.83523 1.24010 0.80702 0.92683 0.70973 1.90657 1.61235 1.44263 1.46748 1.21098 0.95119 0.89167 1.03766 0.85866 1.21501 1.01979 0.95330 0.94866 1.21497 0.93390 0.96304 1.03396 1.21526 0.96065 0.99317 0.97533 1.21437 0.88270 0.94904 0.97171 0.95162 1.60729 1.05772 1.05161 1.59999 1.18923 0.93384 0.87423 0.89176 0.97486 1.22263 0.97533 1.01331 1.00577 1.21496 0.99920 1.08866 1.24896 0.93016 1.25691 1.01989 0.95704 0.95558 1.70008 1.38414 1.14141 1.33712 0.85497 0.80024 0.77852 0.78167 1.19510 1.20670 1.20646 1.21446 0.92668 0.96155 1.02736 0.88305 0.91229 0.91044 0.91455 0.91616 0.88424 0.91569 0.91134 0.89656 0.94174 0.92212 0.85402 0.95630 0.95227 0.91929 0.93045 0.91467 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.36 -7.51 10.12 -51.44 -0.52 -8.03 16 4 C 0.47 11.93 7.26 71.23 0.52 12.44 16 5 O -0.54 -17.08 15.73 21.97 0.35 -16.73 16 6 C -0.07 -1.68 2.63 -11.54 -0.03 -1.71 16 7 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 8 C -0.10 -1.97 5.14 30.60 0.16 -1.82 16 9 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16 10 C -0.11 -3.40 5.41 30.59 0.17 -3.23 16 11 C 0.09 3.20 2.30 44.90 0.10 3.30 16 12 H 0.03 1.10 7.11 -2.39 -0.02 1.08 16 13 N -0.69 -29.54 6.04 -473.39 -2.86 -32.40 16 14 C 0.22 11.21 2.38 44.17 0.11 11.31 16 15 H 0.01 0.41 7.11 -2.38 -0.02 0.39 16 16 C -0.16 -7.70 8.92 71.98 0.64 -7.06 16 17 C -0.51 -29.02 8.84 25.60 0.23 -28.80 16 18 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 19 C 0.01 0.48 5.30 84.65 0.45 0.93 16 20 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 21 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 25 C -0.09 -2.72 3.76 30.58 0.11 -2.61 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 31 H 0.10 1.52 8.11 -2.39 -0.02 1.50 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.50 7.43 -2.39 -0.02 1.49 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.33 13.68 8.09 -89.69 -0.73 12.96 16 38 H 0.02 1.09 7.43 -2.39 -0.02 1.07 16 39 H 0.03 1.38 8.13 -2.38 -0.02 1.36 16 40 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 41 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.07 2.13 8.10 -2.39 -0.02 2.12 16 43 H 0.06 1.83 8.08 -2.39 -0.02 1.81 16 Total: -1.00 -65.11 341.60 3.30 -61.81 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.25 Total: 20.88 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 3.82 Total: -18.91 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.62 Total: -85.75 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.18 Total: -24.76 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -65.11 3.30 -61.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255354442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.891 kcal (2) G-P(sol) polarization free energy of solvation -65.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds