Wall clock time and date at job start Mon Mar 30 2020 01:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47088 * 2 1 4 4 C 1.34235 * 116.99910 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99772 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99850 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46980 * 299.99889 * 6 4 3 8 8 C 1.53000 * 109.46912 * 59.99761 * 6 4 3 9 9 C 1.52997 * 109.47060 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.47127 * 300.00449 * 9 8 6 11 11 C 1.52997 * 109.47164 * 59.99836 * 10 9 8 12 12 H 1.09001 * 109.47375 * 59.99966 * 11 10 9 13 13 N 1.46896 * 109.46908 * 180.02562 * 11 10 9 14 14 C 1.46905 * 111.00204 * 176.04453 * 13 11 10 15 15 C 1.46899 * 111.00159 * 299.99914 * 13 11 10 16 16 C 1.50702 * 109.47204 * 170.00276 * 15 13 11 17 17 H 1.08004 * 120.00050 * 359.97438 * 16 15 13 18 18 C 1.37882 * 120.00041 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99739 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00010 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47526 * 89.99507 * 20 18 16 22 22 H 1.48508 * 109.46845 * 209.99735 * 20 18 16 23 23 H 1.48504 * 109.46875 * 329.99077 * 20 18 16 24 24 C 1.52996 * 109.46946 * 179.97438 * 6 4 3 25 25 H 1.08998 * 109.47413 * 60.00558 * 1 2 3 26 26 H 1.08996 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46863 * 300.00256 * 1 2 3 28 28 H 1.08996 * 109.47599 * 239.99514 * 2 1 3 29 29 H 1.09007 * 109.47218 * 119.99436 * 2 1 3 30 30 H 1.09002 * 109.47398 * 300.00078 * 8 6 4 31 31 H 1.09001 * 109.47194 * 60.00258 * 8 6 4 32 32 H 1.08998 * 109.47533 * 59.99948 * 9 8 6 33 33 H 1.08996 * 109.47853 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 35 35 H 1.09000 * 109.47050 * 179.97438 * 10 9 8 36 36 H 1.09005 * 109.46905 * 59.99634 * 14 13 11 37 37 H 1.08997 * 109.47513 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.46962 * 300.00317 * 14 13 11 39 39 H 1.08998 * 109.46899 * 289.99914 * 15 13 11 40 40 H 1.08993 * 109.47394 * 50.00067 * 15 13 11 41 41 H 0.97003 * 119.99679 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.47554 * 299.99877 * 24 6 4 43 43 H 1.09004 * 109.47108 * 60.00127 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4693 -0.8912 8 6 3.4495 3.6847 1.2480 9 6 4.0348 5.0983 1.2478 10 6 5.5627 5.0178 1.2475 11 6 6.0338 4.2705 -0.0017 12 1 5.6979 4.8026 -0.8917 13 7 7.5007 4.1926 -0.0015 14 6 7.9860 3.3997 -1.1391 15 6 8.0992 5.5342 -0.0015 16 6 9.5817 5.4229 0.2452 17 1 10.0340 4.4527 0.3882 18 6 10.3604 6.5599 0.2895 19 7 9.8095 7.7414 0.1159 20 14 12.1981 6.4220 0.5947 21 1 12.9068 6.2872 -0.7032 22 1 12.6763 7.6408 1.2957 23 1 12.4722 5.2283 1.4347 24 6 5.4486 2.8574 -0.0010 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.3610 3.7418 1.2484 31 1 3.7858 3.1529 2.1381 32 1 3.6990 5.6305 0.3578 33 1 3.6996 5.6307 2.1378 34 1 5.8987 4.4857 2.1375 35 1 5.9797 6.0249 1.2469 36 1 7.6606 3.8635 -2.0703 37 1 9.0749 3.3585 -1.1152 38 1 7.5823 2.3892 -1.0761 39 1 7.9263 6.0091 -0.9673 40 1 7.6439 6.1351 0.7856 41 1 10.3573 8.5413 0.1475 42 1 5.7845 2.3257 0.8891 43 1 5.7846 2.3248 -0.8908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255356205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:58 Heat of formation + Delta-G solvation = -103.964480 kcal Electronic energy + Delta-G solvation = -21288.739933 eV Core-core repulsion = 18140.216537 eV Total energy + Delta-G solvation = -3148.523396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75376 -38.64850 -36.67813 -35.36007 -32.51763 -32.04238 -30.95628 -29.37493 -27.15575 -25.07096 -24.31262 -22.88630 -21.98857 -21.06353 -20.06448 -19.32070 -17.57402 -16.67051 -16.65475 -16.16050 -15.16408 -14.68895 -14.49221 -14.28262 -13.87522 -13.64085 -13.42598 -13.23625 -12.97454 -12.80735 -12.53755 -12.11464 -11.93484 -11.88315 -11.65654 -11.29361 -11.18575 -10.98755 -10.80170 -10.75146 -10.70124 -10.68291 -10.36517 -10.32397 -10.06746 -9.92976 -9.45937 -9.12173 -8.38847 -7.17700 -6.00033 -4.00352 2.18214 2.56037 3.33701 3.39806 3.44719 4.43538 4.50760 4.65394 4.65748 4.73284 4.77132 5.00136 5.07047 5.22851 5.35331 5.37989 5.44369 5.48569 5.51278 5.59207 5.64001 5.67637 5.69290 5.90070 6.07121 6.10595 6.21091 6.26585 6.33968 6.38317 6.44852 6.48645 6.69232 6.79817 6.84752 7.36452 7.39139 7.72304 7.84762 8.14482 8.25753 8.60784 9.07487 9.63420 11.10898 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041600 B = 0.003628 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.911055 B = 7716.483119 C = 8166.254384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.466 3.534 5 O -0.505 6.505 6 C -0.077 4.077 7 H 0.106 0.894 8 C -0.108 4.108 9 C -0.115 4.115 10 C -0.117 4.117 11 C 0.089 3.911 12 H 0.030 0.970 13 N -0.536 5.536 14 C 0.034 3.966 15 C 0.189 3.811 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.896 3.104 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.097 4.097 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.009 0.991 37 H 0.074 0.926 38 H 0.049 0.951 39 H -0.012 1.012 40 H 0.038 0.962 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.374 -10.537 0.015 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.309 3.691 5 O -0.392 6.392 6 C -0.096 4.096 7 H 0.124 0.876 8 C -0.145 4.145 9 C -0.153 4.153 10 C -0.155 4.155 11 C -0.020 4.020 12 H 0.047 0.953 13 N -0.261 5.261 14 C -0.115 4.115 15 C 0.064 3.936 16 C -0.544 4.544 17 H 0.081 0.919 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.135 4.135 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.027 0.973 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.006 0.994 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.970 -10.902 0.445 21.023 hybrid contribution 0.805 0.251 -0.710 1.102 sum -17.165 -10.651 -0.265 20.203 Atomic orbital electron populations 1.21798 0.92717 1.02849 1.03518 1.22999 0.95289 0.80621 1.02536 1.86522 1.24961 1.32018 1.84164 1.23971 0.80229 0.92974 0.71904 1.90663 1.60373 1.43210 1.44958 1.21159 0.97439 0.88958 1.02057 0.87625 1.21532 1.00545 0.96545 0.95892 1.21536 0.96398 0.95244 1.02129 1.21687 0.93590 1.01776 0.98419 1.21468 0.90177 0.93620 0.96771 0.95261 1.62130 1.03047 1.18949 1.41936 1.22272 1.01816 0.96333 0.91042 1.19813 0.94701 0.83215 0.95853 1.21191 0.92235 0.93008 1.47937 0.91911 1.24981 0.98785 0.95281 0.95612 1.69959 1.35711 0.97600 1.50701 0.86519 0.85257 0.77528 0.78250 1.20808 1.21292 1.19780 1.21561 0.89881 0.98101 1.03941 0.91499 0.90370 0.91462 0.91366 0.91314 0.91030 0.91362 0.91877 0.91388 0.91172 0.90556 0.97271 0.90774 0.93209 0.99380 0.94441 0.93001 0.90315 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.19 10.12 -39.27 -0.40 -4.59 16 4 C 0.47 6.30 7.26 36.01 0.26 6.56 16 5 O -0.51 -8.23 15.73 -18.74 -0.29 -8.53 16 6 C -0.08 -0.97 2.63 -91.77 -0.24 -1.21 16 7 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 8 C -0.11 -1.23 5.13 -26.73 -0.14 -1.37 16 9 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 10 C -0.12 -1.92 5.00 -26.73 -0.13 -2.05 16 11 C 0.09 1.58 1.95 -67.74 -0.13 1.44 16 12 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 13 N -0.54 -11.69 4.62 -236.37 -1.09 -12.78 16 14 C 0.03 0.68 8.92 60.07 0.54 1.22 16 15 C 0.19 4.91 4.54 -4.98 -0.02 4.89 16 16 C -0.51 -14.28 8.46 -34.44 -0.29 -14.57 16 17 H 0.06 1.77 7.12 -52.48 -0.37 1.40 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 20 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.10 -1.51 3.41 -26.76 -0.09 -1.60 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.42 6.20 -51.93 -0.32 1.10 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 38 H 0.05 0.89 6.23 -51.93 -0.32 0.56 16 39 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 40 H 0.04 1.02 5.83 -51.93 -0.30 0.71 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.08 1.33 8.10 -51.93 -0.42 0.90 16 43 H 0.07 1.13 6.30 -51.93 -0.33 0.80 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -31.31 338.55 -8.33 -39.65 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.47 Total: -3.01 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 0.10 Total: -6.62 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.36 Total: -38.80 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.69 Total: -13.11 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.31 -8.33 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255356205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.319 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds