Wall clock time and date at job start Mon Mar 30 2020 01:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47088 * 2 1 4 4 C 1.34235 * 116.99910 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99772 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99850 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46980 * 299.99889 * 6 4 3 8 8 C 1.53000 * 109.46912 * 59.99761 * 6 4 3 9 9 C 1.52997 * 109.47060 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.47127 * 300.00449 * 9 8 6 11 11 C 1.52997 * 109.47164 * 59.99836 * 10 9 8 12 12 H 1.09001 * 109.47375 * 59.99966 * 11 10 9 13 13 N 1.46896 * 109.46908 * 180.02562 * 11 10 9 14 14 C 1.46905 * 111.00204 * 176.04453 * 13 11 10 15 15 C 1.46899 * 111.00159 * 299.99914 * 13 11 10 16 16 C 1.50702 * 109.47204 * 170.00276 * 15 13 11 17 17 H 1.08004 * 120.00050 * 359.97438 * 16 15 13 18 18 C 1.37882 * 120.00041 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99739 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00010 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47526 * 89.99507 * 20 18 16 22 22 H 1.48508 * 109.46845 * 209.99735 * 20 18 16 23 23 H 1.48504 * 109.46875 * 329.99077 * 20 18 16 24 24 C 1.52996 * 109.46946 * 179.97438 * 6 4 3 25 25 H 1.08998 * 109.47413 * 60.00558 * 1 2 3 26 26 H 1.08996 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46863 * 300.00256 * 1 2 3 28 28 H 1.08996 * 109.47599 * 239.99514 * 2 1 3 29 29 H 1.09007 * 109.47218 * 119.99436 * 2 1 3 30 30 H 1.09002 * 109.47398 * 300.00078 * 8 6 4 31 31 H 1.09001 * 109.47194 * 60.00258 * 8 6 4 32 32 H 1.08998 * 109.47533 * 59.99948 * 9 8 6 33 33 H 1.08996 * 109.47853 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 35 35 H 1.09000 * 109.47050 * 179.97438 * 10 9 8 36 36 H 1.09005 * 109.46905 * 59.99634 * 14 13 11 37 37 H 1.08997 * 109.47513 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.46962 * 300.00317 * 14 13 11 39 39 H 1.08998 * 109.46899 * 289.99914 * 15 13 11 40 40 H 1.08993 * 109.47394 * 50.00067 * 15 13 11 41 41 H 0.97003 * 119.99679 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.47554 * 299.99877 * 24 6 4 43 43 H 1.09004 * 109.47108 * 60.00127 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4693 -0.8912 8 6 3.4495 3.6847 1.2480 9 6 4.0348 5.0983 1.2478 10 6 5.5627 5.0178 1.2475 11 6 6.0338 4.2705 -0.0017 12 1 5.6979 4.8026 -0.8917 13 7 7.5007 4.1926 -0.0015 14 6 7.9860 3.3997 -1.1391 15 6 8.0992 5.5342 -0.0015 16 6 9.5817 5.4229 0.2452 17 1 10.0340 4.4527 0.3882 18 6 10.3604 6.5599 0.2895 19 7 9.8095 7.7414 0.1159 20 14 12.1981 6.4220 0.5947 21 1 12.9068 6.2872 -0.7032 22 1 12.6763 7.6408 1.2957 23 1 12.4722 5.2283 1.4347 24 6 5.4486 2.8574 -0.0010 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.3610 3.7418 1.2484 31 1 3.7858 3.1529 2.1381 32 1 3.6990 5.6305 0.3578 33 1 3.6996 5.6307 2.1378 34 1 5.8987 4.4857 2.1375 35 1 5.9797 6.0249 1.2469 36 1 7.6606 3.8635 -2.0703 37 1 9.0749 3.3585 -1.1152 38 1 7.5823 2.3892 -1.0761 39 1 7.9263 6.0091 -0.9673 40 1 7.6439 6.1351 0.7856 41 1 10.3573 8.5413 0.1475 42 1 5.7845 2.3257 0.8891 43 1 5.7846 2.3248 -0.8908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255356205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:58 Heat of formation + Delta-G solvation = -122.711106 kcal Electronic energy + Delta-G solvation = -21289.552848 eV Core-core repulsion = 18140.216537 eV Total energy + Delta-G solvation = -3149.336311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.81096 -39.97133 -37.74649 -36.85841 -34.60162 -32.85099 -32.03282 -30.83426 -29.02138 -26.76782 -25.42266 -24.04523 -23.37250 -22.26730 -21.34832 -20.66072 -18.75071 -18.41854 -17.59045 -17.56896 -16.69891 -16.32700 -15.84299 -15.38758 -15.34658 -15.06285 -14.53356 -14.47347 -14.33197 -13.90948 -13.66071 -13.62455 -13.19680 -13.05003 -12.88328 -12.67011 -12.57056 -12.50019 -12.44645 -12.22023 -12.17211 -12.03566 -11.62765 -11.53277 -11.45657 -11.33017 -11.14129 -10.89777 -10.55761 -8.98683 -8.19316 -6.28254 1.13833 1.40659 1.41759 1.53530 1.63651 2.40874 3.12738 3.23284 3.53139 3.68438 3.87150 4.01808 4.09777 4.13587 4.17913 4.27079 4.36576 4.40560 4.44102 4.48234 4.54015 4.65492 4.73162 4.87136 4.94451 4.97897 5.08268 5.10530 5.13459 5.15762 5.17761 5.22328 5.24743 5.35518 5.40759 5.46515 5.50902 5.68324 6.09517 6.36676 6.69153 6.71203 6.87795 7.40774 8.91625 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041600 B = 0.003628 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.911055 B = 7716.483119 C = 8166.254384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.356 6.356 4 C 0.473 3.527 5 O -0.539 6.539 6 C -0.073 4.073 7 H 0.125 0.875 8 C -0.100 4.100 9 C -0.106 4.106 10 C -0.115 4.115 11 C 0.087 3.913 12 H 0.028 0.972 13 N -0.548 5.548 14 C 0.038 3.962 15 C 0.206 3.794 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.967 3.033 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.085 4.085 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.010 0.990 37 H 0.056 0.944 38 H 0.075 0.925 39 H -0.043 1.043 40 H 0.021 0.979 41 H 0.264 0.736 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.814 -11.366 0.235 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.317 3.683 5 O -0.428 6.428 6 C -0.092 4.092 7 H 0.143 0.857 8 C -0.137 4.137 9 C -0.143 4.143 10 C -0.152 4.152 11 C -0.021 4.021 12 H 0.046 0.954 13 N -0.272 5.272 14 C -0.110 4.110 15 C 0.080 3.920 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.195 4.195 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.191 1.191 24 C -0.123 4.123 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.093 0.907 39 H -0.025 1.025 40 H 0.039 0.961 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.444 -11.743 0.663 22.725 hybrid contribution 1.186 0.467 -0.792 1.501 sum -18.258 -11.276 -0.129 21.460 Atomic orbital electron populations 1.21816 0.90206 1.04334 1.03837 1.23302 0.97222 0.79370 1.02412 1.86512 1.23622 1.33545 1.83539 1.23968 0.80701 0.92625 0.70996 1.90657 1.61246 1.44238 1.46703 1.21105 0.95101 0.89248 1.03769 0.85680 1.21509 1.02059 0.95266 0.94912 1.21482 0.92827 0.96444 1.03590 1.21643 0.96842 0.99507 0.97246 1.21587 0.87675 0.95481 0.97376 0.95417 1.62063 1.05712 1.16589 1.42820 1.22240 1.00814 0.97399 0.90575 1.19454 0.94145 0.85016 0.93408 1.21497 0.93574 0.93027 1.48171 0.92292 1.25867 1.03725 0.94823 0.95117 1.70077 1.37593 0.98346 1.51337 0.85424 0.79243 0.77765 0.78435 1.19915 1.20576 1.19149 1.21367 0.92237 0.95822 1.02908 0.91188 0.88324 0.91081 0.91567 0.91512 0.88250 0.91671 0.90849 0.89551 0.92157 0.93499 0.97157 0.92545 0.90664 1.02508 0.96106 0.92704 0.91758 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.84 6.19 71.98 0.45 1.28 16 3 O -0.36 -7.46 10.12 -51.46 -0.52 -7.98 16 4 C 0.47 11.95 7.26 71.24 0.52 12.47 16 5 O -0.54 -17.10 15.73 21.99 0.35 -16.76 16 6 C -0.07 -1.70 2.63 -11.54 -0.03 -1.74 16 7 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 8 C -0.10 -2.02 5.13 30.59 0.16 -1.86 16 9 C -0.11 -2.40 5.92 30.60 0.18 -2.22 16 10 C -0.11 -3.79 5.00 30.60 0.15 -3.63 16 11 C 0.09 3.12 1.95 44.90 0.09 3.21 16 12 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 13 N -0.55 -24.51 4.62 -901.73 -4.17 -28.67 16 14 C 0.04 1.55 8.92 127.69 1.14 2.69 16 15 C 0.21 11.13 4.54 85.56 0.39 11.52 16 16 C -0.52 -30.40 8.46 25.60 0.22 -30.18 16 17 H 0.06 3.39 7.12 -2.91 -0.02 3.37 16 18 C 0.00 0.15 5.46 84.66 0.46 0.61 16 19 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 20 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.09 -2.60 3.41 30.58 0.10 -2.50 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.10 1.54 8.11 -2.39 -0.02 1.52 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.81 6.20 -2.39 -0.01 1.80 16 36 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.06 2.48 6.76 -2.39 -0.02 2.46 16 38 H 0.07 2.67 6.23 -2.39 -0.01 2.65 16 39 H -0.04 -2.53 8.12 -2.39 -0.02 -2.54 16 40 H 0.02 1.19 5.83 -2.39 -0.01 1.18 16 41 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 43 H 0.06 2.02 6.30 -2.38 -0.02 2.00 16 Total: -1.00 -68.66 338.55 3.49 -65.17 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.96 Total: 8.45 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.56 Total: -11.04 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.88 Total: -84.91 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.18 Total: -24.74 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.66 3.49 -65.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255356205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.543 kcal (2) G-P(sol) polarization free energy of solvation -68.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds