Wall clock time and date at job start Mon Mar 30 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45201 * 109.46728 * 2 1 4 4 C 1.34234 * 116.99824 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00124 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99894 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47428 * 299.99804 * 6 4 3 8 8 C 1.53002 * 109.47094 * 59.99697 * 6 4 3 9 9 C 1.53008 * 109.46891 * 60.00324 * 8 6 4 10 10 C 1.53001 * 109.47337 * 59.99807 * 9 8 6 11 11 C 1.52997 * 109.46816 * 300.00107 * 10 9 8 12 12 H 1.08999 * 109.47567 * 299.99523 * 11 10 9 13 13 N 1.46907 * 109.46796 * 179.97438 * 11 10 9 14 14 C 1.46894 * 111.00071 * 306.04728 * 13 11 10 15 15 C 1.46903 * 110.99886 * 70.00000 * 13 11 10 16 16 C 1.50694 * 109.47066 * 169.99909 * 15 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47554 * 60.00198 * 11 10 9 25 25 H 1.09000 * 109.47504 * 299.99719 * 1 2 3 26 26 H 1.08996 * 109.47484 * 60.00457 * 1 2 3 27 27 H 1.09004 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47504 * 240.00281 * 2 1 3 29 29 H 1.09006 * 109.47572 * 119.99652 * 2 1 3 30 30 H 1.09000 * 109.47159 * 179.97438 * 8 6 4 31 31 H 1.08995 * 109.47340 * 299.99994 * 8 6 4 32 32 H 1.08996 * 109.46613 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46657 * 299.99619 * 9 8 6 34 34 H 1.08996 * 109.46946 * 179.97438 * 10 9 8 35 35 H 1.09004 * 109.47047 * 59.99909 * 10 9 8 36 36 H 1.09004 * 109.46699 * 183.95425 * 14 13 11 37 37 H 1.09000 * 109.46908 * 303.94877 * 14 13 11 38 38 H 1.09001 * 109.47502 * 63.95279 * 14 13 11 39 39 H 1.09007 * 109.47052 * 49.99594 * 15 13 11 40 40 H 1.09003 * 109.46808 * 290.00287 * 15 13 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.47267 * 59.99611 * 24 11 10 43 43 H 1.08997 * 109.47434 * 179.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0138 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9205 2.9375 0.0000 7 1 3.5842 3.4702 -0.8894 8 6 3.4495 3.6838 1.2499 9 6 3.9217 2.9361 2.4985 10 6 5.4496 2.8561 2.4978 11 6 5.9206 2.1099 1.2479 12 1 5.5041 1.1026 1.2475 13 7 7.3877 2.0337 1.2468 14 6 7.9843 3.3682 1.3915 15 6 7.8683 1.1255 2.2967 16 6 9.3437 0.8805 2.1121 17 1 9.8716 1.3519 1.2963 18 6 10.0197 0.0536 2.9843 19 7 9.3768 -0.5209 3.9775 20 14 11.8484 -0.2506 2.7550 21 1 12.3343 -1.1686 3.8164 22 1 12.0851 -0.8635 1.4233 23 1 12.5796 1.0388 2.8436 24 6 5.4485 2.8576 -0.0007 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8664 4.6909 1.2505 31 1 2.3610 3.7408 1.2504 32 1 3.5865 3.4679 3.3889 33 1 3.5051 1.9288 2.4981 34 1 5.7860 2.3239 3.3875 35 1 5.8662 3.8634 2.4982 36 1 9.0691 3.2911 1.3173 37 1 7.6115 4.0203 0.6017 38 1 7.7151 3.7832 2.3628 39 1 7.3318 0.1788 2.2318 40 1 7.6941 1.5755 3.2741 41 1 9.8523 -1.1028 4.5907 42 1 5.8650 3.8649 -0.0004 43 1 5.7844 2.3262 -0.8912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255356207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:00 Heat of formation + Delta-G solvation = -97.687399 kcal Electronic energy + Delta-G solvation = -21914.816215 eV Core-core repulsion = 18766.565013 eV Total energy + Delta-G solvation = -3148.251202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87170 -38.56725 -36.43290 -35.23453 -32.48262 -31.83552 -30.81169 -29.19745 -26.95009 -24.94294 -24.61452 -22.81441 -21.97209 -21.58841 -19.85495 -19.10093 -17.26657 -16.64844 -16.29429 -15.81951 -15.31982 -14.85664 -14.34817 -14.14969 -13.89195 -13.58617 -13.43223 -13.05700 -12.97319 -12.44819 -12.24371 -12.06538 -11.91412 -11.83853 -11.72091 -11.62314 -11.27569 -10.85134 -10.78977 -10.74425 -10.63380 -10.43560 -10.32413 -10.17964 -9.98859 -9.76479 -9.40702 -9.09985 -8.34284 -7.02906 -5.94156 -3.94826 2.36469 2.71057 3.38491 3.41965 3.45458 4.47057 4.58012 4.72838 4.79166 4.84188 4.86548 5.03192 5.15498 5.26891 5.38622 5.40633 5.44518 5.60253 5.60854 5.62301 5.66806 5.75242 5.78210 5.95956 5.98190 6.13340 6.16855 6.29354 6.33852 6.40685 6.45535 6.50480 6.75014 6.85617 6.96694 7.45495 7.48958 7.90101 7.92613 8.22785 8.35619 8.69047 9.12850 9.68610 11.16729 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025506 B = 0.004561 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.531414 B = 6136.972592 C = 6626.293224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.363 6.363 4 C 0.461 3.539 5 O -0.487 6.487 6 C -0.076 4.076 7 H 0.104 0.896 8 C -0.108 4.108 9 C -0.118 4.118 10 C -0.155 4.155 11 C 0.074 3.926 12 H 0.098 0.902 13 N -0.532 5.532 14 C 0.033 3.967 15 C 0.195 3.805 16 C -0.505 4.505 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.897 3.103 21 H -0.288 1.288 22 H -0.276 1.276 23 H -0.278 1.278 24 C -0.096 4.096 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.014 0.986 39 H 0.028 0.972 40 H -0.009 1.009 41 H 0.260 0.740 42 H 0.074 0.926 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.420 7.640 -6.862 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.373 6.373 6 C -0.096 4.096 7 H 0.122 0.878 8 C -0.146 4.146 9 C -0.156 4.156 10 C -0.195 4.195 11 C -0.035 4.035 12 H 0.116 0.884 13 N -0.255 5.255 14 C -0.116 4.116 15 C 0.070 3.930 16 C -0.544 4.544 17 H 0.080 0.920 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.725 3.275 21 H -0.214 1.214 22 H -0.202 1.202 23 H -0.204 1.204 24 C -0.133 4.133 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.010 6.977 -7.162 19.731 hybrid contribution 0.757 -0.141 0.825 1.128 sum -16.253 6.836 -6.337 18.736 Atomic orbital electron populations 1.21788 0.92880 1.02808 1.03292 1.22987 0.95095 0.80667 1.02732 1.86490 1.25104 1.32007 1.84449 1.23844 0.80248 0.93044 0.72529 1.90700 1.59755 1.43040 1.43761 1.21173 0.97484 0.89687 1.01224 0.87763 1.21545 1.00931 0.99213 0.92893 1.21538 0.96896 0.99989 0.97214 1.22310 0.94563 1.01557 1.01030 1.21972 0.90075 1.00095 0.91364 0.88433 1.62281 1.03252 1.09420 1.50515 1.22269 1.00931 0.90751 0.97623 1.19694 0.95560 0.90848 0.86923 1.21169 0.93503 1.27710 1.12008 0.92005 1.24987 0.98448 0.95950 0.95279 1.69960 1.36136 1.31660 1.16230 0.86578 0.85224 0.77986 0.77701 1.21423 1.20197 1.20360 1.21516 0.89966 1.01396 1.00468 0.91567 0.91656 0.90408 0.91330 0.91194 0.90459 0.91011 0.91849 0.92657 0.91413 0.91870 0.91232 0.93739 0.96732 0.95415 0.99088 0.93005 0.90746 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.15 0.38 -0.76 16 2 C 0.06 0.64 6.19 37.15 0.23 0.87 16 3 O -0.36 -4.60 10.12 -39.27 -0.40 -5.00 16 4 C 0.46 6.75 5.74 36.01 0.21 6.95 16 5 O -0.49 -8.96 13.41 -18.75 -0.25 -9.21 16 6 C -0.08 -0.94 3.11 -91.77 -0.29 -1.23 16 7 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 8 C -0.11 -1.20 5.39 -26.73 -0.14 -1.35 16 9 C -0.12 -1.61 5.70 -26.73 -0.15 -1.76 16 10 C -0.16 -2.65 4.45 -26.73 -0.12 -2.77 16 11 C 0.07 1.42 1.90 -67.71 -0.13 1.29 16 12 H 0.10 2.14 5.31 -51.93 -0.28 1.87 16 13 N -0.53 -12.07 4.70 -236.33 -1.11 -13.18 16 14 C 0.03 0.66 8.48 60.06 0.51 1.16 16 15 C 0.19 5.33 4.29 -4.98 -0.02 5.31 16 16 C -0.51 -14.77 8.51 -34.44 -0.29 -15.06 16 17 H 0.06 1.78 7.10 -52.49 -0.37 1.41 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 20 Si 0.90 22.31 29.54 -169.99 -5.02 17.28 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.10 -1.46 4.30 -26.73 -0.11 -1.57 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.70 8.11 -51.93 -0.42 0.27 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.82 7.22 -51.93 -0.37 0.45 16 34 H 0.07 1.34 6.91 -51.93 -0.36 0.98 16 35 H 0.06 1.02 6.41 -51.93 -0.33 0.68 16 36 H 0.07 1.49 6.86 -51.93 -0.36 1.13 16 37 H 0.04 0.74 6.30 -51.93 -0.33 0.42 16 38 H 0.01 0.28 6.46 -51.93 -0.34 -0.05 16 39 H 0.03 0.83 7.93 -51.92 -0.41 0.42 16 40 H -0.01 -0.25 7.06 -51.93 -0.37 -0.61 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 1.02 6.47 -51.93 -0.34 0.69 16 43 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -32.73 329.87 -8.31 -41.04 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.21 Total: -1.59 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.03 Total: -7.42 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.37 Total: -40.07 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.65 Total: -14.21 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.73 -8.31 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255356207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.645 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds