Wall clock time and date at job start Mon Mar 30 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45201 * 109.46728 * 2 1 4 4 C 1.34234 * 116.99824 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00124 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99894 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47428 * 299.99804 * 6 4 3 8 8 C 1.53002 * 109.47094 * 59.99697 * 6 4 3 9 9 C 1.53008 * 109.46891 * 60.00324 * 8 6 4 10 10 C 1.53001 * 109.47337 * 59.99807 * 9 8 6 11 11 C 1.52997 * 109.46816 * 300.00107 * 10 9 8 12 12 H 1.08999 * 109.47567 * 299.99523 * 11 10 9 13 13 N 1.46907 * 109.46796 * 179.97438 * 11 10 9 14 14 C 1.46894 * 111.00071 * 306.04728 * 13 11 10 15 15 C 1.46903 * 110.99886 * 70.00000 * 13 11 10 16 16 C 1.50694 * 109.47066 * 169.99909 * 15 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47554 * 60.00198 * 11 10 9 25 25 H 1.09000 * 109.47504 * 299.99719 * 1 2 3 26 26 H 1.08996 * 109.47484 * 60.00457 * 1 2 3 27 27 H 1.09004 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47504 * 240.00281 * 2 1 3 29 29 H 1.09006 * 109.47572 * 119.99652 * 2 1 3 30 30 H 1.09000 * 109.47159 * 179.97438 * 8 6 4 31 31 H 1.08995 * 109.47340 * 299.99994 * 8 6 4 32 32 H 1.08996 * 109.46613 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46657 * 299.99619 * 9 8 6 34 34 H 1.08996 * 109.46946 * 179.97438 * 10 9 8 35 35 H 1.09004 * 109.47047 * 59.99909 * 10 9 8 36 36 H 1.09004 * 109.46699 * 183.95425 * 14 13 11 37 37 H 1.09000 * 109.46908 * 303.94877 * 14 13 11 38 38 H 1.09001 * 109.47502 * 63.95279 * 14 13 11 39 39 H 1.09007 * 109.47052 * 49.99594 * 15 13 11 40 40 H 1.09003 * 109.46808 * 290.00287 * 15 13 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.47267 * 59.99611 * 24 11 10 43 43 H 1.08997 * 109.47434 * 179.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0138 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9205 2.9375 0.0000 7 1 3.5842 3.4702 -0.8894 8 6 3.4495 3.6838 1.2499 9 6 3.9217 2.9361 2.4985 10 6 5.4496 2.8561 2.4978 11 6 5.9206 2.1099 1.2479 12 1 5.5041 1.1026 1.2475 13 7 7.3877 2.0337 1.2468 14 6 7.9843 3.3682 1.3915 15 6 7.8683 1.1255 2.2967 16 6 9.3437 0.8805 2.1121 17 1 9.8716 1.3519 1.2963 18 6 10.0197 0.0536 2.9843 19 7 9.3768 -0.5209 3.9775 20 14 11.8484 -0.2506 2.7550 21 1 12.3343 -1.1686 3.8164 22 1 12.0851 -0.8635 1.4233 23 1 12.5796 1.0388 2.8436 24 6 5.4485 2.8576 -0.0007 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8664 4.6909 1.2505 31 1 2.3610 3.7408 1.2504 32 1 3.5865 3.4679 3.3889 33 1 3.5051 1.9288 2.4981 34 1 5.7860 2.3239 3.3875 35 1 5.8662 3.8634 2.4982 36 1 9.0691 3.2911 1.3173 37 1 7.6115 4.0203 0.6017 38 1 7.7151 3.7832 2.3628 39 1 7.3318 0.1788 2.2318 40 1 7.6941 1.5755 3.2741 41 1 9.8523 -1.1028 4.5907 42 1 5.8650 3.8649 -0.0004 43 1 5.7844 2.3262 -0.8912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255356207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:00 Heat of formation + Delta-G solvation = -119.083883 kcal Electronic energy + Delta-G solvation = -21915.744036 eV Core-core repulsion = 18766.565013 eV Total energy + Delta-G solvation = -3149.179023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03925 -39.90889 -37.66902 -36.72672 -34.63021 -32.73190 -31.94568 -30.74496 -28.87777 -26.77971 -25.67238 -24.07152 -23.41957 -22.81971 -21.25657 -20.44550 -18.57631 -18.37414 -17.69392 -16.96818 -16.73686 -16.61768 -15.90173 -15.50964 -15.23496 -15.00634 -14.69454 -14.48588 -14.12198 -13.80847 -13.55449 -13.38258 -13.18003 -13.13756 -12.98283 -12.85425 -12.71043 -12.62286 -12.48973 -12.21544 -12.08434 -11.89072 -11.81262 -11.50422 -11.44047 -11.30013 -11.07614 -10.81731 -10.61198 -8.86350 -8.21228 -6.32657 1.24214 1.37923 1.42804 1.50524 1.72686 2.38925 3.10049 3.28467 3.64950 3.76096 3.82773 3.98656 4.04013 4.10391 4.16506 4.25869 4.34308 4.39784 4.51085 4.56398 4.62946 4.73274 4.77405 4.84902 4.92620 4.94623 5.00451 5.06129 5.11983 5.14110 5.15494 5.19922 5.24814 5.30183 5.38659 5.49465 5.61437 5.65590 6.06306 6.41309 6.71440 6.82014 6.85927 7.37281 8.89795 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025506 B = 0.004561 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.531414 B = 6136.972592 C = 6626.293224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.355 6.355 4 C 0.459 3.541 5 O -0.537 6.537 6 C -0.072 4.072 7 H 0.149 0.851 8 C -0.099 4.099 9 C -0.115 4.115 10 C -0.148 4.148 11 C 0.071 3.929 12 H 0.059 0.941 13 N -0.546 5.546 14 C 0.037 3.963 15 C 0.216 3.784 16 C -0.526 4.526 17 H 0.064 0.936 18 C -0.002 4.002 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.282 1.282 22 H -0.269 1.269 23 H -0.263 1.263 24 C -0.087 4.087 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.023 0.977 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.015 0.985 39 H -0.018 1.018 40 H -0.036 1.036 41 H 0.264 0.736 42 H 0.101 0.899 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 10.198 -8.211 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.304 3.696 5 O -0.426 6.426 6 C -0.091 4.091 7 H 0.166 0.834 8 C -0.136 4.136 9 C -0.153 4.153 10 C -0.187 4.187 11 C -0.038 4.038 12 H 0.077 0.923 13 N -0.269 5.269 14 C -0.111 4.111 15 C 0.089 3.911 16 C -0.564 4.564 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.207 1.207 22 H -0.194 1.194 23 H -0.188 1.188 24 C -0.125 4.125 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.034 0.966 39 H 0.000 1.000 40 H -0.018 1.018 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.895 9.567 -8.525 22.009 hybrid contribution 0.944 -0.995 1.257 1.861 sum -16.950 8.572 -7.267 20.337 Atomic orbital electron populations 1.21789 0.89818 1.04233 1.03988 1.23221 0.97444 0.79865 1.01805 1.86489 1.24016 1.32880 1.83835 1.24463 0.80513 0.93622 0.71049 1.90704 1.60911 1.44849 1.46151 1.21302 0.95055 0.88687 1.04034 0.83381 1.21580 1.02577 0.99574 0.89911 1.21527 0.93849 0.99733 1.00191 1.22190 0.97445 1.01162 0.97896 1.21991 0.87656 0.99410 0.94758 0.92291 1.62184 1.05928 1.10443 1.48304 1.22281 0.99827 0.89707 0.99270 1.19240 0.94756 0.89879 0.87183 1.21503 0.94393 1.28231 1.12319 0.91754 1.26007 1.04001 0.95308 0.94645 1.70113 1.38419 1.32174 1.17128 0.85375 0.78494 0.78472 0.77896 1.20709 1.19434 1.18759 1.21434 0.92428 1.01585 0.97064 0.91127 0.90589 0.88666 0.91768 0.92833 0.87505 0.88482 0.89768 0.94928 0.95776 0.90146 0.93040 0.89482 0.96608 1.00001 1.01829 0.92731 0.88059 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.29 71.98 0.74 -1.17 16 2 C 0.05 1.10 6.19 71.98 0.45 1.54 16 3 O -0.36 -8.61 10.12 -51.46 -0.52 -9.13 16 4 C 0.46 13.23 5.74 71.24 0.41 13.64 16 5 O -0.54 -20.84 13.41 21.97 0.29 -20.54 16 6 C -0.07 -1.56 3.11 -11.54 -0.04 -1.60 16 7 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 8 C -0.10 -1.80 5.39 30.60 0.16 -1.63 16 9 C -0.11 -2.99 5.70 30.60 0.17 -2.82 16 10 C -0.15 -5.11 4.45 30.59 0.14 -4.97 16 11 C 0.07 2.78 1.90 44.91 0.09 2.86 16 12 H 0.06 2.81 5.31 -2.39 -0.01 2.79 16 13 N -0.55 -25.66 4.70 -901.60 -4.24 -29.90 16 14 C 0.04 1.46 8.48 127.69 1.08 2.54 16 15 C 0.22 12.63 4.29 85.55 0.37 13.00 16 16 C -0.53 -31.91 8.51 25.60 0.22 -31.69 16 17 H 0.06 3.78 7.10 -2.91 -0.02 3.76 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 19 N -0.94 -59.80 13.29 21.45 0.28 -59.51 16 20 Si 0.97 46.35 29.54 68.60 2.03 48.38 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 24 C -0.09 -2.51 4.30 30.59 0.13 -2.38 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 29 H 0.05 1.32 8.13 -2.38 -0.02 1.30 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.38 8.11 -2.39 -0.02 1.36 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.03 0.98 7.22 -2.39 -0.02 0.97 16 34 H 0.02 1.01 6.91 -2.39 -0.02 0.99 16 35 H 0.08 2.47 6.41 -2.39 -0.02 2.45 16 36 H 0.05 2.19 6.86 -2.38 -0.02 2.18 16 37 H 0.09 2.66 6.30 -2.39 -0.02 2.64 16 38 H 0.02 0.61 6.46 -2.39 -0.02 0.59 16 39 H -0.02 -1.20 7.93 -2.38 -0.02 -1.22 16 40 H -0.04 -2.24 7.06 -2.39 -0.02 -2.25 16 41 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 42 H 0.10 2.36 6.47 -2.39 -0.02 2.35 16 43 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 Total: -1.00 -77.18 329.87 3.20 -73.98 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.98 Total: 9.08 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.38 Total: -12.35 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -3.95 Total: -89.42 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.23 Total: -29.67 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.18 3.20 -73.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255356207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.104 kcal (2) G-P(sol) polarization free energy of solvation -77.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds