Wall clock time and date at job start Mon Mar 30 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46905 * 109.46840 * 2 1 4 4 C 1.46905 * 111.00118 * 288.94745 * 3 2 1 5 5 C 1.50691 * 109.46804 * 160.56359 * 4 3 2 6 6 H 1.07997 * 120.00633 * 4.47415 * 5 4 3 7 7 C 1.37878 * 119.99882 * 184.47625 * 5 4 3 8 8 N 1.31512 * 120.00263 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99934 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47334 * 90.00080 * 9 7 5 11 11 H 1.48501 * 109.47524 * 209.99841 * 9 7 5 12 12 H 1.48503 * 109.47238 * 330.00429 * 9 7 5 13 13 C 1.46904 * 110.99485 * 164.99574 * 3 2 1 14 14 C 1.52994 * 109.46575 * 298.95138 * 13 3 2 15 15 C 1.53022 * 109.45890 * 180.18337 * 14 13 3 16 16 C 1.52962 * 109.44730 * 300.20789 * 15 14 13 17 17 C 1.52953 * 109.82894 * 59.64938 * 16 15 14 18 18 C 1.53000 * 109.46663 * 58.98287 * 13 3 2 19 19 O 1.43693 * 109.42551 * 179.81074 * 16 15 14 20 20 C 1.44805 * 104.79661 * 95.47624 * 19 16 15 21 21 C 1.54915 * 101.72451 * 36.06733 * 20 19 16 22 22 O 1.43316 * 109.62015 * 299.12043 * 16 15 14 23 23 H 1.08998 * 109.46849 * 183.02117 * 1 2 3 24 24 H 1.09004 * 109.47227 * 303.02586 * 1 2 3 25 25 H 1.09007 * 109.47119 * 63.01771 * 1 2 3 26 26 H 1.08995 * 109.46864 * 240.00194 * 2 1 3 27 27 H 1.08993 * 109.46819 * 120.00103 * 2 1 3 28 28 H 1.08998 * 109.46729 * 280.56415 * 4 3 2 29 29 H 1.09006 * 109.46856 * 40.56125 * 4 3 2 30 30 H 0.97006 * 120.00264 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.45838 * 178.96832 * 13 3 2 32 32 H 1.08992 * 109.47876 * 300.17954 * 14 13 3 33 33 H 1.08997 * 109.47380 * 60.19115 * 14 13 3 34 34 H 1.08997 * 109.46994 * 60.19690 * 15 14 13 35 35 H 1.08995 * 109.47629 * 180.21492 * 15 14 13 36 36 H 1.08999 * 109.47572 * 180.37391 * 17 16 15 37 37 H 1.09000 * 109.47212 * 60.36231 * 17 16 15 38 38 H 1.09003 * 109.46532 * 299.82720 * 18 13 3 39 39 H 1.08995 * 109.47213 * 59.82362 * 18 13 3 40 40 H 1.08995 * 110.97612 * 277.95438 * 20 19 16 41 41 H 1.09001 * 111.00777 * 154.18568 * 20 19 16 42 42 H 1.08998 * 110.69765 * 206.07641 * 21 20 19 43 43 H 1.09009 * 110.69477 * 82.87493 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.7753 2.0299 -1.2972 5 6 1.8340 3.5266 -1.1330 6 1 2.1040 3.9552 -0.1791 7 6 1.5430 4.3492 -2.2005 8 7 1.5947 5.6555 -2.0575 9 14 1.0767 3.6081 -3.8506 10 1 -0.3954 3.4229 -3.9118 11 1 1.5066 4.5191 -4.9417 12 1 1.7480 2.2932 -4.0102 13 6 3.4441 1.4398 0.3551 14 6 3.6409 0.8725 1.7623 15 6 5.1241 0.9338 2.1337 16 6 5.9349 0.1126 1.1298 17 6 5.7357 0.6724 -0.2796 18 6 4.2515 0.6121 -0.6469 19 8 7.3280 0.1741 1.4765 20 6 7.5661 -1.0175 2.2641 21 6 6.6465 -2.0478 1.5621 22 8 5.5076 -1.2548 1.1699 23 1 -0.3633 -1.0262 0.0542 24 1 -0.3634 0.5601 0.8616 25 1 -0.3634 0.4663 -0.9159 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5364 1.7123 -2.0098 29 1 0.7903 1.7430 -1.6656 30 1 1.3897 6.2342 -2.8085 31 1 3.7852 2.4747 0.3296 32 1 3.0632 1.4606 2.4753 33 1 3.3027 -0.1634 1.7871 34 1 5.4615 1.9700 2.1123 35 1 5.2652 0.5262 3.1347 36 1 6.3104 0.0793 -0.9908 37 1 6.0760 1.7075 -0.3108 38 1 3.9123 -0.4235 -0.6195 39 1 4.1086 1.0148 -1.6496 40 1 7.2639 -0.8671 3.3004 41 1 8.6108 -1.3229 2.2047 42 1 6.3481 -2.8336 2.2560 43 1 7.1401 -2.4718 0.6876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255624550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:19 Heat of formation + Delta-G solvation = -87.771763 kcal Electronic energy + Delta-G solvation = -22425.362343 eV Core-core repulsion = 19277.541116 eV Total energy + Delta-G solvation = -3147.821227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.86825 -38.35466 -35.06691 -34.77167 -32.48862 -30.75873 -30.59649 -29.42487 -27.91230 -25.68636 -23.52333 -22.76945 -22.29756 -21.82508 -20.17439 -18.45868 -17.18398 -16.81501 -16.59161 -15.72079 -15.35288 -14.89749 -14.40551 -14.07434 -13.85272 -13.82367 -13.43841 -13.14221 -12.85259 -12.78835 -12.43673 -12.30193 -12.09448 -11.62171 -11.56497 -11.42716 -11.19914 -11.09762 -10.87799 -10.67438 -10.54810 -10.43151 -10.24937 -10.04482 -9.81395 -9.56842 -9.28550 -9.20013 -8.49725 -7.20437 -5.99403 -3.94805 3.31010 3.33977 3.38807 3.40812 3.92009 4.42652 4.46575 4.68024 4.74701 4.79709 4.91172 5.04778 5.21626 5.32952 5.34752 5.44668 5.49008 5.59910 5.62464 5.71049 5.74472 5.79613 5.90352 5.94951 6.07428 6.11749 6.19329 6.28957 6.33813 6.40611 6.45067 6.56953 6.67333 6.77305 6.85419 7.01486 7.09676 7.13659 7.72123 8.02433 8.16221 8.74598 9.11175 9.63409 11.14112 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024837 B = 0.005462 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.074151 B = 5125.104993 C = 5556.767850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.518 5.518 4 C 0.156 3.844 5 C -0.501 4.501 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.871 3.129 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.093 3.907 14 C -0.106 4.106 15 C -0.131 4.131 16 C 0.260 3.740 17 C -0.112 4.112 18 C -0.146 4.146 19 O -0.374 6.374 20 C 0.015 3.985 21 C 0.019 3.981 22 O -0.370 6.370 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.022 0.978 27 H 0.067 0.933 28 H -0.006 1.006 29 H 0.024 0.976 30 H 0.262 0.738 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.487 -15.771 7.730 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 N -0.241 5.241 4 C 0.030 3.970 5 C -0.539 4.539 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.016 4.016 14 C -0.144 4.144 15 C -0.170 4.170 16 C 0.183 3.817 17 C -0.151 4.151 18 C -0.185 4.185 19 O -0.294 6.294 20 C -0.062 4.062 21 C -0.058 4.058 22 O -0.291 6.291 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.011 0.989 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.105 -15.225 7.870 19.407 hybrid contribution 0.315 -0.829 -1.513 1.754 sum 9.419 -16.054 6.357 19.669 Atomic orbital electron populations 1.21773 0.95810 0.99937 1.02732 1.22107 0.95541 0.91235 0.99585 1.62221 1.14684 1.13755 1.33445 1.20275 0.95284 0.95816 0.85598 1.21046 1.45722 0.88291 0.98878 0.90253 1.24884 0.95402 0.94697 0.98376 1.69895 1.50087 1.02671 1.31544 0.86925 0.79225 0.79404 0.84571 1.20240 1.21307 1.19374 1.21630 0.87823 0.99887 0.92293 1.21547 0.93675 1.01624 0.97560 1.22085 0.96544 1.00578 0.97787 1.23456 0.79418 0.83027 0.95766 1.21728 0.98214 1.01847 0.93278 1.22169 0.93545 1.01294 1.01514 1.89269 1.26506 1.42909 1.70757 1.24326 1.01446 0.84353 0.96038 1.24149 0.87234 0.95124 0.99296 1.88935 1.32921 1.17176 1.90066 0.93623 0.92040 0.92684 0.96022 0.91476 0.98892 0.95762 0.92803 0.88998 0.90903 0.91473 0.89963 0.91756 0.91631 0.90000 0.91679 0.90735 0.90830 0.87755 0.88616 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C 0.04 0.77 4.62 -3.82 -0.02 0.75 16 3 N -0.52 -10.79 4.38 -228.08 -1.00 -11.79 16 4 C 0.16 3.79 3.54 -4.98 -0.02 3.77 16 5 C -0.50 -14.24 9.22 -34.44 -0.32 -14.56 16 6 H 0.08 2.47 7.85 -52.49 -0.41 2.05 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 9 Si 0.87 21.73 27.38 -169.99 -4.65 17.08 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.48 6.67 56.52 0.38 -6.10 16 13 C 0.09 1.74 2.13 -67.71 -0.14 1.59 16 14 C -0.11 -1.67 4.91 -26.72 -0.13 -1.80 16 15 C -0.13 -1.85 5.28 -26.74 -0.14 -1.99 16 16 C 0.26 3.68 1.02 -26.78 -0.03 3.65 16 17 C -0.11 -1.73 5.33 -26.75 -0.14 -1.88 16 18 C -0.15 -2.54 4.44 -26.72 -0.12 -2.66 16 19 O -0.37 -5.05 10.99 -59.04 -0.65 -5.70 16 20 C 0.01 0.14 7.91 38.17 0.30 0.44 16 21 C 0.02 0.18 8.07 38.17 0.31 0.49 16 22 O -0.37 -5.06 9.61 -59.04 -0.57 -5.63 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.99 6.58 -51.93 -0.34 0.64 16 26 H 0.02 0.39 7.10 -51.93 -0.37 0.02 16 27 H 0.07 1.09 5.70 -51.93 -0.30 0.79 16 28 H -0.01 -0.16 5.25 -51.93 -0.27 -0.43 16 29 H 0.02 0.60 5.41 -51.93 -0.28 0.32 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 31 H 0.09 1.96 7.37 -51.93 -0.38 1.58 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.04 5.72 -51.93 -0.30 0.75 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.11 6.32 -51.93 -0.33 0.79 16 39 H 0.07 1.43 6.24 -51.93 -0.32 1.11 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -31.37 320.49 -8.56 -39.92 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.11 Total: 0.71 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.18 Total: -12.36 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.22 Total: -38.85 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.22 Total: -11.33 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.65 Total: 17.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.37 -8.56 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255624550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.849 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds