Wall clock time and date at job start Mon Mar 30 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46905 * 109.46840 * 2 1 4 4 C 1.46905 * 111.00118 * 288.94745 * 3 2 1 5 5 C 1.50691 * 109.46804 * 160.56359 * 4 3 2 6 6 H 1.07997 * 120.00633 * 4.47415 * 5 4 3 7 7 C 1.37878 * 119.99882 * 184.47625 * 5 4 3 8 8 N 1.31512 * 120.00263 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99934 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47334 * 90.00080 * 9 7 5 11 11 H 1.48501 * 109.47524 * 209.99841 * 9 7 5 12 12 H 1.48503 * 109.47238 * 330.00429 * 9 7 5 13 13 C 1.46904 * 110.99485 * 164.99574 * 3 2 1 14 14 C 1.52994 * 109.46575 * 298.95138 * 13 3 2 15 15 C 1.53022 * 109.45890 * 180.18337 * 14 13 3 16 16 C 1.52962 * 109.44730 * 300.20789 * 15 14 13 17 17 C 1.52953 * 109.82894 * 59.64938 * 16 15 14 18 18 C 1.53000 * 109.46663 * 58.98287 * 13 3 2 19 19 O 1.43693 * 109.42551 * 179.81074 * 16 15 14 20 20 C 1.44805 * 104.79661 * 95.47624 * 19 16 15 21 21 C 1.54915 * 101.72451 * 36.06733 * 20 19 16 22 22 O 1.43316 * 109.62015 * 299.12043 * 16 15 14 23 23 H 1.08998 * 109.46849 * 183.02117 * 1 2 3 24 24 H 1.09004 * 109.47227 * 303.02586 * 1 2 3 25 25 H 1.09007 * 109.47119 * 63.01771 * 1 2 3 26 26 H 1.08995 * 109.46864 * 240.00194 * 2 1 3 27 27 H 1.08993 * 109.46819 * 120.00103 * 2 1 3 28 28 H 1.08998 * 109.46729 * 280.56415 * 4 3 2 29 29 H 1.09006 * 109.46856 * 40.56125 * 4 3 2 30 30 H 0.97006 * 120.00264 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.45838 * 178.96832 * 13 3 2 32 32 H 1.08992 * 109.47876 * 300.17954 * 14 13 3 33 33 H 1.08997 * 109.47380 * 60.19115 * 14 13 3 34 34 H 1.08997 * 109.46994 * 60.19690 * 15 14 13 35 35 H 1.08995 * 109.47629 * 180.21492 * 15 14 13 36 36 H 1.08999 * 109.47572 * 180.37391 * 17 16 15 37 37 H 1.09000 * 109.47212 * 60.36231 * 17 16 15 38 38 H 1.09003 * 109.46532 * 299.82720 * 18 13 3 39 39 H 1.08995 * 109.47213 * 59.82362 * 18 13 3 40 40 H 1.08995 * 110.97612 * 277.95438 * 20 19 16 41 41 H 1.09001 * 111.00777 * 154.18568 * 20 19 16 42 42 H 1.08998 * 110.69765 * 206.07641 * 21 20 19 43 43 H 1.09009 * 110.69477 * 82.87493 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.7753 2.0299 -1.2972 5 6 1.8340 3.5266 -1.1330 6 1 2.1040 3.9552 -0.1791 7 6 1.5430 4.3492 -2.2005 8 7 1.5947 5.6555 -2.0575 9 14 1.0767 3.6081 -3.8506 10 1 -0.3954 3.4229 -3.9118 11 1 1.5066 4.5191 -4.9417 12 1 1.7480 2.2932 -4.0102 13 6 3.4441 1.4398 0.3551 14 6 3.6409 0.8725 1.7623 15 6 5.1241 0.9338 2.1337 16 6 5.9349 0.1126 1.1298 17 6 5.7357 0.6724 -0.2796 18 6 4.2515 0.6121 -0.6469 19 8 7.3280 0.1741 1.4765 20 6 7.5661 -1.0175 2.2641 21 6 6.6465 -2.0478 1.5621 22 8 5.5076 -1.2548 1.1699 23 1 -0.3633 -1.0262 0.0542 24 1 -0.3634 0.5601 0.8616 25 1 -0.3634 0.4663 -0.9159 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5364 1.7123 -2.0098 29 1 0.7903 1.7430 -1.6656 30 1 1.3897 6.2342 -2.8085 31 1 3.7852 2.4747 0.3296 32 1 3.0632 1.4606 2.4753 33 1 3.3027 -0.1634 1.7871 34 1 5.4615 1.9700 2.1123 35 1 5.2652 0.5262 3.1347 36 1 6.3104 0.0793 -0.9908 37 1 6.0760 1.7075 -0.3108 38 1 3.9123 -0.4235 -0.6195 39 1 4.1086 1.0148 -1.6496 40 1 7.2639 -0.8671 3.3004 41 1 8.6108 -1.3229 2.2047 42 1 6.3481 -2.8336 2.2560 43 1 7.1401 -2.4718 0.6876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255624550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:19 Heat of formation + Delta-G solvation = -109.358007 kcal Electronic energy + Delta-G solvation = -22426.298393 eV Core-core repulsion = 19277.541116 eV Total energy + Delta-G solvation = -3148.757277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90119 -39.78344 -36.27403 -35.91351 -34.63153 -32.10452 -31.83550 -30.84686 -29.33344 -27.21891 -24.56029 -24.18734 -23.61728 -23.32698 -21.53734 -19.92127 -18.88761 -18.11962 -17.65756 -16.97091 -16.67292 -16.39572 -15.90784 -15.51438 -15.18679 -15.10313 -14.70310 -14.49952 -14.37967 -14.17767 -13.78883 -13.47038 -13.37380 -13.08266 -13.03736 -12.72575 -12.54635 -12.52382 -12.40152 -12.26617 -12.07303 -11.83288 -11.73342 -11.55542 -11.32911 -11.09474 -11.01184 -10.73424 -10.40616 -8.85789 -8.25765 -6.26668 1.33224 1.34278 1.44977 2.34861 2.45970 2.92853 3.06682 3.26118 3.60884 3.68447 3.78259 4.01839 4.06782 4.16734 4.22718 4.28049 4.32862 4.41864 4.47451 4.54686 4.56349 4.64371 4.70223 4.75152 4.77822 4.83310 4.91561 4.97554 5.04052 5.07543 5.08456 5.11215 5.16628 5.24192 5.40583 5.43025 5.48327 5.63926 6.07823 6.17600 6.50309 6.73900 6.78917 7.35901 8.91367 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024837 B = 0.005462 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.074151 B = 5125.104993 C = 5556.767850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.535 5.535 4 C 0.168 3.832 5 C -0.506 4.506 6 H 0.034 0.966 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.941 3.059 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.254 1.254 13 C 0.093 3.907 14 C -0.094 4.094 15 C -0.128 4.128 16 C 0.267 3.733 17 C -0.113 4.113 18 C -0.134 4.134 19 O -0.393 6.393 20 C 0.010 3.990 21 C 0.013 3.987 22 O -0.386 6.386 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.037 0.963 26 H 0.025 0.975 27 H 0.087 0.913 28 H -0.008 1.008 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.917 -18.962 7.921 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.258 5.258 4 C 0.041 3.959 5 C -0.544 4.544 6 H 0.053 0.947 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.765 3.235 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.178 1.178 13 C -0.016 4.016 14 C -0.132 4.132 15 C -0.167 4.167 16 C 0.190 3.810 17 C -0.151 4.151 18 C -0.173 4.173 19 O -0.314 6.314 20 C -0.066 4.066 21 C -0.063 4.063 22 O -0.308 6.308 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.106 0.894 28 H 0.009 0.991 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.546 -18.446 8.083 22.287 hybrid contribution 0.253 0.152 -1.449 1.479 sum 9.799 -18.293 6.634 21.787 Atomic orbital electron populations 1.21768 0.94855 1.01865 1.01472 1.22211 0.96321 0.89163 1.00647 1.62126 1.16223 1.16072 1.31415 1.19993 0.95199 0.93209 0.87460 1.21263 1.45088 0.90928 0.97159 0.94726 1.25786 0.95373 0.94981 1.02722 1.70052 1.51644 1.04377 1.33038 0.85801 0.79488 0.79075 0.79126 1.18971 1.20779 1.17778 1.21577 0.86987 0.98236 0.94804 1.21417 0.95073 1.01605 0.95082 1.22044 0.95136 1.00379 0.99126 1.23145 0.80044 0.83546 0.94280 1.21682 0.96758 1.01529 0.95149 1.21987 0.94786 1.00963 0.99578 1.89250 1.25699 1.44851 1.71623 1.24649 1.03119 0.82683 0.96111 1.24447 0.86288 0.95265 1.00321 1.88903 1.34641 1.16906 1.90338 0.90160 0.92732 0.94409 0.95702 0.89445 0.99058 0.95468 0.92590 0.93020 0.91534 0.90378 0.91026 0.89487 0.90748 0.91303 0.90799 0.93187 0.89531 0.85132 0.85888 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.91 71.98 0.71 -3.71 16 2 C 0.04 1.48 4.62 86.30 0.40 1.88 16 3 N -0.54 -22.49 4.38 -875.52 -3.83 -26.32 16 4 C 0.17 8.26 3.54 85.55 0.30 8.57 16 5 C -0.51 -29.99 9.22 25.60 0.24 -29.76 16 6 H 0.03 2.30 7.85 -2.91 -0.02 2.27 16 7 C 0.01 0.48 5.47 84.66 0.46 0.95 16 8 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 9 Si 0.94 45.21 27.38 68.60 1.88 47.09 16 10 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.25 -11.48 6.67 99.48 0.66 -10.82 16 13 C 0.09 3.56 2.13 44.91 0.10 3.65 16 14 C -0.09 -2.90 4.91 30.60 0.15 -2.75 16 15 C -0.13 -3.48 5.28 30.59 0.16 -3.32 16 16 C 0.27 7.16 1.02 30.57 0.03 7.19 16 17 C -0.11 -3.46 5.33 30.58 0.16 -3.30 16 18 C -0.13 -4.66 4.44 30.60 0.14 -4.52 16 19 O -0.39 -9.86 10.99 -126.22 -1.39 -11.25 16 20 C 0.01 0.15 7.91 72.64 0.57 0.73 16 21 C 0.01 0.20 8.07 72.64 0.59 0.78 16 22 O -0.39 -9.50 9.61 -126.22 -1.21 -10.72 16 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.05 1.75 8.14 -2.38 -0.02 1.74 16 25 H 0.04 1.29 6.58 -2.38 -0.02 1.27 16 26 H 0.02 0.83 7.10 -2.39 -0.02 0.81 16 27 H 0.09 2.59 5.70 -2.39 -0.01 2.58 16 28 H -0.01 -0.40 5.25 -2.39 -0.01 -0.41 16 29 H 0.03 1.32 5.41 -2.38 -0.01 1.31 16 30 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 31 H 0.05 2.37 7.37 -2.39 -0.02 2.35 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.25 5.72 -2.39 -0.01 2.24 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 2.43 6.32 -2.39 -0.02 2.41 16 39 H 0.05 1.95 6.24 -2.39 -0.01 1.94 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -70.07 320.49 0.70 -69.38 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.94 Total: 15.79 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.01 Total: -23.62 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -3.53 Total: -86.67 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -2.60 Total: -21.97 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -70.07 0.70 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255624550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.980 kcal (2) G-P(sol) polarization free energy of solvation -70.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds