Wall clock time and date at job start Mon Mar 30 2020 01:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47235 * 2 1 4 4 C 1.34222 * 117.00331 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99847 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00300 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.43568 * 298.91749 * 6 4 3 8 8 C 1.54270 * 110.48358 * 61.45606 * 6 4 3 9 9 C 1.53872 * 106.59691 * 142.28736 * 8 6 4 10 10 C 1.54268 * 106.59980 * 0.02562 * 9 8 6 11 11 H 1.09002 * 110.48866 * 95.20158 * 10 9 8 12 12 N 1.46906 * 110.48647 * 217.71083 * 10 9 8 13 13 C 1.46901 * 110.99793 * 271.75804 * 12 10 9 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47116 * 59.99479 * 20 18 16 22 22 H 1.48490 * 109.47381 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46756 * 300.00079 * 20 18 16 24 24 C 1.54886 * 104.31180 * 336.45170 * 10 9 8 25 25 H 1.09002 * 109.47312 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47345 * 300.00099 * 1 2 3 27 27 H 1.09002 * 109.47162 * 59.99886 * 1 2 3 28 28 H 1.09001 * 109.47345 * 239.99901 * 2 1 3 29 29 H 1.09001 * 109.46833 * 119.99680 * 2 1 3 30 30 H 1.09002 * 110.03271 * 23.00384 * 8 6 4 31 31 H 1.08996 * 110.02982 * 261.57006 * 8 6 4 32 32 H 1.09000 * 110.03430 * 240.71420 * 9 8 6 33 33 H 1.09009 * 110.03313 * 119.28390 * 9 8 6 34 34 H 1.00898 * 110.99995 * 35.70882 * 12 10 9 35 35 H 1.09002 * 109.47401 * 59.99808 * 13 12 10 36 36 H 1.09001 * 109.46874 * 299.99821 * 13 12 10 37 37 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 38 38 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 39 39 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 40 40 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 41 41 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 42 42 H 1.08999 * 110.75868 * 156.18937 * 24 10 9 43 43 H 1.08997 * 110.75901 * 279.56199 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.6102 3.4774 -0.8945 8 6 3.4883 3.7010 1.2688 9 6 4.6953 4.5510 1.7030 10 6 5.8187 4.2748 0.6825 11 1 5.8181 5.0334 -0.1002 12 7 7.1245 4.2321 1.3543 13 6 7.7215 5.5722 1.4300 14 6 9.0774 5.4872 2.1338 15 6 9.6990 6.8830 2.2133 16 6 11.0342 6.7996 2.9070 17 1 11.4024 5.8464 3.2567 18 6 11.7858 7.9401 3.0953 19 7 11.3376 9.1007 2.6691 20 14 13.4412 7.8365 3.9546 21 1 14.3408 6.9363 3.1893 22 1 14.0444 9.1912 4.0319 23 1 13.2540 7.2996 5.3265 24 6 5.4672 2.8866 0.0924 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2251 2.9960 2.0574 31 1 2.6386 4.3460 1.0451 32 1 5.0178 4.2585 2.7023 33 1 4.4312 5.6085 1.6900 34 1 7.0459 3.8189 2.2715 35 1 7.0611 6.2331 1.9914 36 1 7.8593 5.9659 0.4230 37 1 8.9401 5.0933 3.1408 38 1 9.7376 4.8265 1.5721 39 1 9.8364 7.2774 1.2064 40 1 9.0386 7.5435 2.7752 41 1 11.8665 9.9030 2.8012 42 1 5.9115 2.7628 -0.8952 43 1 5.7866 2.0893 0.7635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257026840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:17 Heat of formation + Delta-G solvation = -120.134638 kcal Electronic energy + Delta-G solvation = -20056.151216 eV Core-core repulsion = 16906.926629 eV Total energy + Delta-G solvation = -3149.224587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90531 -38.60605 -36.82641 -35.28214 -33.20718 -32.11471 -31.03006 -29.15238 -27.96121 -25.53645 -23.91111 -22.40330 -22.29095 -20.69978 -20.29665 -19.77930 -17.86281 -17.06021 -16.65178 -16.35026 -15.90843 -14.82346 -14.76502 -14.39882 -14.33316 -13.90840 -13.56283 -13.46543 -13.17459 -12.58332 -12.38501 -12.28215 -12.14159 -11.97182 -11.79738 -11.46220 -11.33333 -11.23190 -11.03301 -10.87179 -10.78943 -10.74767 -10.54724 -10.48159 -10.46294 -9.66744 -9.30138 -9.03508 -8.31359 -8.11283 -5.96830 -3.98751 1.97202 2.36550 3.35980 3.39861 3.42896 4.09089 4.26057 4.38858 4.49422 4.53399 4.58684 4.73411 4.83277 4.87043 5.14490 5.15720 5.26025 5.30536 5.35639 5.36807 5.38845 5.46796 5.56033 5.65974 5.77789 5.85758 5.92158 5.99071 6.10126 6.13446 6.20350 6.34983 6.75602 6.81510 7.16917 7.38507 7.51634 7.65386 7.71548 7.86856 8.03749 8.47214 9.08259 9.64994 11.14562 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.061901 B = 0.002392 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.227190 B =11703.026070 C =11901.114112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.504 6.504 6 C -0.090 4.090 7 H 0.113 0.887 8 C -0.105 4.105 9 C -0.155 4.155 10 C 0.083 3.917 11 H 0.086 0.914 12 N -0.683 5.683 13 C 0.059 3.941 14 C -0.108 4.108 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.094 4.094 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.339 0.661 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.978 -14.417 -5.718 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.312 3.688 5 O -0.391 6.391 6 C -0.109 4.109 7 H 0.131 0.869 8 C -0.144 4.144 9 C -0.195 4.195 10 C -0.028 4.028 11 H 0.104 0.896 12 N -0.313 5.313 13 C -0.069 4.069 14 C -0.146 4.146 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.132 4.132 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.370 -14.712 -6.292 27.503 hybrid contribution 0.312 0.288 1.154 1.230 sum -22.058 -14.424 -5.137 26.851 Atomic orbital electron populations 1.21805 0.92599 1.02975 1.03557 1.23028 0.95391 0.80375 1.02618 1.86522 1.24785 1.32255 1.84051 1.23741 0.80363 0.92723 0.72003 1.90679 1.60396 1.43099 1.44936 1.22008 0.97570 0.89444 1.01911 0.86898 1.21997 0.98677 0.98386 0.95294 1.22956 0.96061 1.00340 1.00100 1.22425 0.87637 0.96600 0.96096 0.89625 1.60547 1.21802 1.23331 1.25615 1.22153 0.96470 0.87588 1.00683 1.21632 0.93603 1.01095 0.98285 1.19059 0.95137 0.90267 0.97066 1.21231 1.03474 0.93635 1.37390 0.92726 1.25036 0.98141 0.95508 0.95890 1.69961 1.38229 0.98469 1.46981 0.86649 0.84161 0.76995 0.80141 1.20219 1.21332 1.20291 1.22457 0.89810 0.98227 1.02749 0.90252 0.91436 0.91464 0.91256 0.91251 0.91454 0.90528 0.91201 0.91116 0.84206 0.95680 0.91479 0.93695 0.92538 0.96584 0.96838 0.93013 0.90370 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.38 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.48 10.20 -39.24 -0.40 -3.88 16 4 C 0.47 5.15 7.12 36.01 0.26 5.40 16 5 O -0.50 -6.99 15.51 -18.75 -0.29 -7.29 16 6 C -0.09 -0.83 3.36 -90.05 -0.30 -1.13 16 7 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 8 C -0.11 -0.90 6.35 -25.61 -0.16 -1.07 16 9 C -0.16 -1.55 6.48 -25.61 -0.17 -1.72 16 10 C 0.08 0.97 3.17 -66.05 -0.21 0.76 16 11 H 0.09 0.99 7.85 -51.93 -0.41 0.59 16 12 N -0.68 -9.86 6.35 -104.97 -0.67 -10.53 16 13 C 0.06 1.02 5.54 -3.82 -0.02 0.99 16 14 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 17 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 20 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.09 -1.05 5.60 -24.68 -0.14 -1.18 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 29 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 30 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.73 7.55 -51.93 -0.39 0.33 16 33 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.34 4.67 8.11 -39.29 -0.32 4.35 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.08 7.53 -51.93 -0.39 0.69 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -32.00 352.21 -8.95 -40.95 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.79 Total: -1.62 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.83 Total: -13.37 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.07 Total: -37.05 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.69 Total: -11.17 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.00 -8.95 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257026840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.183 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds