Wall clock time and date at job start Mon Mar 30 2020 01:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47235 * 2 1 4 4 C 1.34222 * 117.00331 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99847 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00300 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.43568 * 298.91749 * 6 4 3 8 8 C 1.54270 * 110.48358 * 61.45606 * 6 4 3 9 9 C 1.53872 * 106.59691 * 142.28736 * 8 6 4 10 10 C 1.54268 * 106.59980 * 0.02562 * 9 8 6 11 11 H 1.09002 * 110.48866 * 95.20158 * 10 9 8 12 12 N 1.46906 * 110.48647 * 217.71083 * 10 9 8 13 13 C 1.46901 * 110.99793 * 271.75804 * 12 10 9 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47116 * 59.99479 * 20 18 16 22 22 H 1.48490 * 109.47381 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46756 * 300.00079 * 20 18 16 24 24 C 1.54886 * 104.31180 * 336.45170 * 10 9 8 25 25 H 1.09002 * 109.47312 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47345 * 300.00099 * 1 2 3 27 27 H 1.09002 * 109.47162 * 59.99886 * 1 2 3 28 28 H 1.09001 * 109.47345 * 239.99901 * 2 1 3 29 29 H 1.09001 * 109.46833 * 119.99680 * 2 1 3 30 30 H 1.09002 * 110.03271 * 23.00384 * 8 6 4 31 31 H 1.08996 * 110.02982 * 261.57006 * 8 6 4 32 32 H 1.09000 * 110.03430 * 240.71420 * 9 8 6 33 33 H 1.09009 * 110.03313 * 119.28390 * 9 8 6 34 34 H 1.00898 * 110.99995 * 35.70882 * 12 10 9 35 35 H 1.09002 * 109.47401 * 59.99808 * 13 12 10 36 36 H 1.09001 * 109.46874 * 299.99821 * 13 12 10 37 37 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 38 38 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 39 39 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 40 40 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 41 41 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 42 42 H 1.08999 * 110.75868 * 156.18937 * 24 10 9 43 43 H 1.08997 * 110.75901 * 279.56199 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.6102 3.4774 -0.8945 8 6 3.4883 3.7010 1.2688 9 6 4.6953 4.5510 1.7030 10 6 5.8187 4.2748 0.6825 11 1 5.8181 5.0334 -0.1002 12 7 7.1245 4.2321 1.3543 13 6 7.7215 5.5722 1.4300 14 6 9.0774 5.4872 2.1338 15 6 9.6990 6.8830 2.2133 16 6 11.0342 6.7996 2.9070 17 1 11.4024 5.8464 3.2567 18 6 11.7858 7.9401 3.0953 19 7 11.3376 9.1007 2.6691 20 14 13.4412 7.8365 3.9546 21 1 14.3408 6.9363 3.1893 22 1 14.0444 9.1912 4.0319 23 1 13.2540 7.2996 5.3265 24 6 5.4672 2.8866 0.0924 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2251 2.9960 2.0574 31 1 2.6386 4.3460 1.0451 32 1 5.0178 4.2585 2.7023 33 1 4.4312 5.6085 1.6900 34 1 7.0459 3.8189 2.2715 35 1 7.0611 6.2331 1.9914 36 1 7.8593 5.9659 0.4230 37 1 8.9401 5.0933 3.1408 38 1 9.7376 4.8265 1.5721 39 1 9.8364 7.2774 1.2064 40 1 9.0386 7.5435 2.7752 41 1 11.8665 9.9030 2.8012 42 1 5.9115 2.7628 -0.8952 43 1 5.7866 2.0893 0.7635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257026840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:17 Heat of formation + Delta-G solvation = -139.050365 kcal Electronic energy + Delta-G solvation = -20056.971463 eV Core-core repulsion = 16906.926629 eV Total energy + Delta-G solvation = -3150.044834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.74017 -39.51940 -37.70613 -36.71481 -35.05225 -32.99634 -32.44933 -29.97516 -29.28502 -27.17893 -24.70186 -24.02561 -23.05006 -22.08840 -21.23705 -20.93720 -18.69088 -18.48685 -17.83820 -17.48190 -16.89633 -16.52749 -16.09703 -15.67449 -15.30327 -14.94121 -14.44154 -14.37967 -14.27600 -13.94148 -13.65172 -13.54195 -13.04014 -12.97071 -12.88582 -12.71437 -12.51856 -12.45175 -12.39714 -12.21648 -12.12858 -11.85087 -11.62263 -11.53586 -11.50006 -11.35724 -11.29488 -11.04960 -10.54005 -9.27367 -8.19426 -6.30252 1.12892 1.40227 1.43444 1.51406 1.64378 2.41571 3.13351 3.14723 3.42936 3.55818 3.90812 3.99383 4.03583 4.08209 4.23775 4.32933 4.34451 4.38569 4.43085 4.48891 4.55561 4.60201 4.75312 4.84657 4.90863 4.92053 4.98757 5.04802 5.11422 5.14663 5.23134 5.24467 5.25352 5.29790 5.45321 5.53523 5.77073 5.87170 6.14392 6.29537 6.50963 6.69807 6.86415 7.38648 8.92129 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.061901 B = 0.002392 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.227190 B =11703.026070 C =11901.114112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.471 3.529 5 O -0.540 6.540 6 C -0.084 4.084 7 H 0.138 0.862 8 C -0.097 4.097 9 C -0.151 4.151 10 C 0.082 3.918 11 H 0.089 0.911 12 N -0.689 5.689 13 C 0.075 3.925 14 C -0.095 4.095 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.058 0.942 18 C -0.002 4.002 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.091 4.091 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.344 0.656 35 H 0.028 0.972 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.049 0.951 39 H -0.008 1.008 40 H -0.007 1.007 41 H 0.264 0.736 42 H 0.075 0.925 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.967 -14.949 -5.504 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.275 6.275 4 C 0.316 3.684 5 O -0.429 6.429 6 C -0.103 4.103 7 H 0.155 0.845 8 C -0.136 4.136 9 C -0.190 4.190 10 C -0.028 4.028 11 H 0.108 0.892 12 N -0.319 5.319 13 C -0.054 4.054 14 C -0.133 4.133 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.192 1.192 24 C -0.129 4.129 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.163 0.837 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.010 0.990 40 H 0.011 0.989 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.393 -15.257 -6.079 28.583 hybrid contribution 0.571 0.421 1.062 1.277 sum -22.822 -14.836 -5.017 27.679 Atomic orbital electron populations 1.21818 0.90343 1.04321 1.03794 1.23283 0.97157 0.79422 1.02390 1.86522 1.23951 1.33475 1.83538 1.24033 0.80579 0.92893 0.70938 1.90668 1.61212 1.44316 1.46750 1.22020 0.95961 0.88891 1.03440 0.84456 1.21962 0.98641 0.98247 0.94700 1.22886 0.95889 1.00995 0.99237 1.22481 0.86785 0.97087 0.96453 0.89247 1.60460 1.23821 1.21495 1.26121 1.21831 0.94600 0.89167 0.99821 1.21395 0.95353 0.97516 0.99018 1.18964 0.94489 0.92809 0.94933 1.21684 1.04768 0.94000 1.37838 0.92395 1.25995 1.02367 0.95050 0.96546 1.70089 1.39923 0.99237 1.48019 0.85498 0.79001 0.77331 0.79201 1.19296 1.20698 1.19181 1.22348 0.91437 0.97119 1.02017 0.88374 0.91237 0.91120 0.91441 0.91652 0.91652 0.88389 0.91671 0.90509 0.83749 0.95397 0.91894 0.93258 0.93181 0.98979 0.98909 0.92762 0.90664 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 71.98 0.74 -0.45 16 2 C 0.05 0.73 6.19 71.98 0.45 1.17 16 3 O -0.36 -6.44 10.20 -51.34 -0.52 -6.96 16 4 C 0.47 9.87 7.12 71.24 0.51 10.38 16 5 O -0.54 -14.94 15.51 21.97 0.34 -14.60 16 6 C -0.08 -1.40 3.36 -10.42 -0.04 -1.44 16 7 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 8 C -0.10 -1.44 6.35 31.32 0.20 -1.24 16 9 C -0.15 -2.74 6.48 31.32 0.20 -2.53 16 10 C 0.08 1.81 3.17 45.99 0.15 1.95 16 11 H 0.09 1.93 7.85 -2.39 -0.02 1.91 16 12 N -0.69 -19.38 6.35 -486.02 -3.08 -22.46 16 13 C 0.07 2.53 5.54 86.30 0.48 3.01 16 14 C -0.09 -3.99 5.41 30.59 0.17 -3.82 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 19 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 20 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C -0.09 -1.94 5.60 31.93 0.18 -1.76 16 25 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 30 H 0.06 1.02 7.83 -2.39 -0.02 1.00 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.26 7.55 -2.39 -0.02 1.24 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.34 9.19 8.11 -89.70 -0.73 8.47 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 1.68 7.53 -2.39 -0.02 1.66 16 Total: -1.00 -68.98 352.21 3.15 -65.83 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.24 Total: 12.69 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 3.87 Total: -24.38 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.80 Total: -79.55 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.18 Total: -21.56 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.98 3.15 -65.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257026840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.219 kcal (2) G-P(sol) polarization free energy of solvation -68.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds