Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47103 * 2 1 4 4 C 1.34230 * 117.00169 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99763 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99991 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.53750 * 302.61487 * 6 4 3 8 8 C 1.54887 * 110.48381 * 65.22677 * 6 4 3 9 9 C 1.54893 * 102.74533 * 156.62255 * 8 6 4 10 10 C 1.54266 * 104.19500 * 322.05712 * 9 8 6 11 11 H 1.09002 * 110.02957 * 264.32709 * 10 9 8 12 12 N 1.46893 * 110.07327 * 142.92086 * 10 9 8 13 13 C 1.46900 * 111.00517 * 87.80796 * 12 10 9 14 14 C 1.53000 * 109.47528 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47026 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47295 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99951 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00537 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00292 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99772 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47393 * 89.99750 * 20 18 16 22 22 H 1.48511 * 109.46974 * 209.99821 * 20 18 16 23 23 H 1.48501 * 109.47030 * 329.99212 * 20 18 16 24 24 C 1.53872 * 106.60044 * 23.61099 * 10 9 8 25 25 H 1.09001 * 109.47366 * 60.00172 * 1 2 3 26 26 H 1.09004 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47656 * 299.99543 * 1 2 3 28 28 H 1.09001 * 109.46953 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47366 * 119.99828 * 2 1 3 30 30 H 1.09001 * 110.75744 * 274.93157 * 8 6 4 31 31 H 1.09000 * 110.75698 * 38.30975 * 8 6 4 32 32 H 1.09002 * 110.48578 * 203.38190 * 9 8 6 33 33 H 1.08998 * 110.60430 * 80.79077 * 9 8 6 34 34 H 1.00903 * 111.00016 * 323.85128 * 12 10 9 35 35 H 1.09003 * 109.46851 * 300.00304 * 13 12 10 36 36 H 1.09005 * 109.47121 * 60.00007 * 13 12 10 37 37 H 1.09004 * 109.46701 * 299.99757 * 14 13 12 38 38 H 1.08991 * 109.47115 * 59.99726 * 14 13 12 39 39 H 1.08999 * 109.47408 * 299.99368 * 15 14 13 40 40 H 1.08997 * 109.47828 * 60.00136 * 15 14 13 41 41 H 0.97001 * 120.00140 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.03622 * 240.71485 * 24 10 9 43 43 H 1.09005 * 110.03465 * 119.28158 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5588 3.5006 -0.8603 8 6 3.5653 3.6715 1.3168 9 6 4.6744 4.7480 1.4179 10 6 5.9416 4.0353 0.9022 11 1 6.5146 3.6392 1.7407 12 7 6.7665 4.9715 0.1271 13 6 7.6937 5.7036 1.0002 14 6 8.5334 6.6670 0.1590 15 6 9.4994 7.4290 1.0684 16 6 10.3269 8.3775 0.2398 17 1 10.1789 8.4312 -0.8287 18 6 11.2729 9.1768 0.8456 19 7 11.9954 10.0042 0.1224 20 14 11.5294 9.0836 2.6935 21 1 12.5600 8.0590 2.9992 22 1 11.9806 10.4055 3.1980 23 1 10.2515 8.7123 3.3525 24 6 5.4624 2.8841 0.0007 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.5816 4.1358 1.2470 31 1 3.6119 2.9881 2.1647 32 1 4.8080 5.0621 2.4531 33 1 4.4357 5.6050 0.7880 34 1 6.1902 5.6079 -0.4029 35 1 7.1265 6.2678 1.7406 36 1 8.3503 4.9965 1.5072 37 1 9.1005 6.1030 -0.5815 38 1 7.8766 7.3740 -0.3476 39 1 8.9326 7.9929 1.8092 40 1 10.1562 6.7217 1.5747 41 1 12.6607 10.5669 0.5487 42 1 5.8028 1.9293 0.4015 43 1 5.8411 3.0206 -1.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257026842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = -115.557083 kcal Electronic energy + Delta-G solvation = -20117.222377 eV Core-core repulsion = 16968.196288 eV Total energy + Delta-G solvation = -3149.026089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94975 -38.70210 -36.87556 -35.35702 -33.18436 -32.13923 -31.26212 -29.19832 -28.22377 -25.76879 -23.95142 -22.38194 -22.15322 -20.96614 -20.24275 -19.51368 -18.14230 -16.95524 -16.86848 -16.63357 -15.88885 -15.21873 -14.64053 -14.40485 -14.21830 -13.82770 -13.72825 -13.44916 -13.21806 -12.70018 -12.62113 -12.39918 -12.15561 -12.04284 -11.91305 -11.53472 -11.45309 -11.35779 -11.10576 -10.92617 -10.90197 -10.78806 -10.73085 -10.54418 -9.93135 -9.70606 -9.53976 -9.14551 -8.51146 -8.20567 -6.01464 -3.99095 1.93791 2.34591 3.32456 3.39435 3.43001 4.08743 4.23316 4.40042 4.45175 4.47484 4.51237 4.57395 4.84560 4.91262 5.06718 5.18498 5.20872 5.29100 5.32390 5.33896 5.35829 5.39075 5.53812 5.60657 5.67314 5.78443 5.81440 5.91993 6.02082 6.08682 6.19814 6.22517 6.58633 6.61428 6.94605 7.25359 7.37431 7.46871 7.48562 7.59430 7.83216 8.57863 9.04176 9.61189 11.12086 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.058705 B = 0.002505 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.843382 B =11173.434650 C =11283.619438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.469 3.531 5 O -0.506 6.506 6 C -0.089 4.089 7 H 0.113 0.887 8 C -0.106 4.106 9 C -0.153 4.153 10 C 0.083 3.917 11 H 0.082 0.918 12 N -0.684 5.684 13 C 0.056 3.944 14 C -0.100 4.100 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.106 4.106 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.340 0.660 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.084 0.916 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.108 -17.977 2.104 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.312 3.688 5 O -0.393 6.393 6 C -0.108 4.108 7 H 0.131 0.869 8 C -0.145 4.145 9 C -0.193 4.193 10 C -0.027 4.027 11 H 0.100 0.900 12 N -0.314 5.314 13 C -0.072 4.072 14 C -0.138 4.138 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.144 4.144 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.159 0.841 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.280 -18.639 1.937 29.885 hybrid contribution -0.355 0.488 1.379 1.505 sum -23.635 -18.151 3.316 29.984 Atomic orbital electron populations 1.21806 0.92581 1.02989 1.03576 1.23031 0.95413 0.80359 1.02608 1.86523 1.24735 1.32266 1.84000 1.23756 0.80365 0.92806 0.71867 1.90660 1.60359 1.43142 1.45157 1.21996 0.97579 0.89471 1.01754 0.86924 1.22397 0.99531 0.97416 0.95116 1.23171 0.95629 0.98093 1.02379 1.22206 0.92323 0.93015 0.95196 0.89967 1.60652 1.21550 1.22392 1.26799 1.22179 0.94397 0.95928 0.94727 1.21446 0.97458 0.96339 0.98563 1.19542 0.94563 0.95316 0.95687 1.21160 1.18341 1.20249 0.95888 0.91029 1.25051 0.95523 0.95026 0.98076 1.69922 1.23734 1.25033 1.35700 0.86760 0.78834 0.77267 0.86282 1.20308 1.21456 1.19112 1.22246 0.90204 0.99547 1.02422 0.91430 0.90243 0.91445 0.91233 0.91273 0.90302 0.91021 0.91011 0.90772 0.84145 0.95723 0.91527 0.91963 0.93046 0.96876 0.97071 0.92802 0.89739 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.36 -3.38 10.22 -39.26 -0.40 -3.79 16 4 C 0.47 5.00 7.25 36.01 0.26 5.26 16 5 O -0.51 -6.80 15.17 -18.75 -0.28 -7.09 16 6 C -0.09 -0.80 3.36 -90.11 -0.30 -1.10 16 7 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 8 C -0.11 -0.86 6.32 -24.74 -0.16 -1.01 16 9 C -0.15 -1.41 6.46 -25.07 -0.16 -1.57 16 10 C 0.08 0.93 3.23 -66.60 -0.22 0.71 16 11 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 12 N -0.68 -9.15 6.17 -105.55 -0.65 -9.80 16 13 C 0.06 0.90 5.51 -3.82 -0.02 0.88 16 14 C -0.10 -1.98 5.41 -26.73 -0.14 -2.13 16 15 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 16 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 17 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 20 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 24 C -0.11 -1.13 5.98 -25.61 -0.15 -1.29 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 34 H 0.34 4.20 8.11 -39.29 -0.32 3.88 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 40 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.08 1.01 6.85 -51.93 -0.36 0.66 16 43 H 0.09 0.98 7.92 -51.93 -0.41 0.57 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -32.39 347.89 -8.54 -40.93 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.72 Total: -1.41 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -0.83 Total: -13.92 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.12 Total: -37.30 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.69 Total: -10.87 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.39 -8.54 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257026842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.630 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds