Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47103 * 2 1 4 4 C 1.34230 * 117.00169 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99763 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99991 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.53750 * 302.61487 * 6 4 3 8 8 C 1.54887 * 110.48381 * 65.22677 * 6 4 3 9 9 C 1.54893 * 102.74533 * 156.62255 * 8 6 4 10 10 C 1.54266 * 104.19500 * 322.05712 * 9 8 6 11 11 H 1.09002 * 110.02957 * 264.32709 * 10 9 8 12 12 N 1.46893 * 110.07327 * 142.92086 * 10 9 8 13 13 C 1.46900 * 111.00517 * 87.80796 * 12 10 9 14 14 C 1.53000 * 109.47528 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47026 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47295 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99951 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00537 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00292 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99772 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47393 * 89.99750 * 20 18 16 22 22 H 1.48511 * 109.46974 * 209.99821 * 20 18 16 23 23 H 1.48501 * 109.47030 * 329.99212 * 20 18 16 24 24 C 1.53872 * 106.60044 * 23.61099 * 10 9 8 25 25 H 1.09001 * 109.47366 * 60.00172 * 1 2 3 26 26 H 1.09004 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47656 * 299.99543 * 1 2 3 28 28 H 1.09001 * 109.46953 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47366 * 119.99828 * 2 1 3 30 30 H 1.09001 * 110.75744 * 274.93157 * 8 6 4 31 31 H 1.09000 * 110.75698 * 38.30975 * 8 6 4 32 32 H 1.09002 * 110.48578 * 203.38190 * 9 8 6 33 33 H 1.08998 * 110.60430 * 80.79077 * 9 8 6 34 34 H 1.00903 * 111.00016 * 323.85128 * 12 10 9 35 35 H 1.09003 * 109.46851 * 300.00304 * 13 12 10 36 36 H 1.09005 * 109.47121 * 60.00007 * 13 12 10 37 37 H 1.09004 * 109.46701 * 299.99757 * 14 13 12 38 38 H 1.08991 * 109.47115 * 59.99726 * 14 13 12 39 39 H 1.08999 * 109.47408 * 299.99368 * 15 14 13 40 40 H 1.08997 * 109.47828 * 60.00136 * 15 14 13 41 41 H 0.97001 * 120.00140 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.03622 * 240.71485 * 24 10 9 43 43 H 1.09005 * 110.03465 * 119.28158 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5588 3.5006 -0.8603 8 6 3.5653 3.6715 1.3168 9 6 4.6744 4.7480 1.4179 10 6 5.9416 4.0353 0.9022 11 1 6.5146 3.6392 1.7407 12 7 6.7665 4.9715 0.1271 13 6 7.6937 5.7036 1.0002 14 6 8.5334 6.6670 0.1590 15 6 9.4994 7.4290 1.0684 16 6 10.3269 8.3775 0.2398 17 1 10.1789 8.4312 -0.8287 18 6 11.2729 9.1768 0.8456 19 7 11.9954 10.0042 0.1224 20 14 11.5294 9.0836 2.6935 21 1 12.5600 8.0590 2.9992 22 1 11.9806 10.4055 3.1980 23 1 10.2515 8.7123 3.3525 24 6 5.4624 2.8841 0.0007 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.5816 4.1358 1.2470 31 1 3.6119 2.9881 2.1647 32 1 4.8080 5.0621 2.4531 33 1 4.4357 5.6050 0.7880 34 1 6.1902 5.6079 -0.4029 35 1 7.1265 6.2678 1.7406 36 1 8.3503 4.9965 1.5072 37 1 9.1005 6.1030 -0.5815 38 1 7.8766 7.3740 -0.3476 39 1 8.9326 7.9929 1.8092 40 1 10.1562 6.7217 1.5747 41 1 12.6607 10.5669 0.5487 42 1 5.8028 1.9293 0.4015 43 1 5.8411 3.0206 -1.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257026842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = -135.556880 kcal Electronic energy + Delta-G solvation = -20118.089634 eV Core-core repulsion = 16968.196288 eV Total energy + Delta-G solvation = -3149.893346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75450 -39.55888 -37.72285 -36.70735 -34.98140 -33.17189 -32.52718 -29.97733 -29.50536 -27.25646 -24.64370 -23.77662 -23.04856 -22.02970 -21.54393 -20.49646 -18.99347 -18.82516 -17.70904 -17.58106 -16.77420 -16.52905 -16.11183 -15.68032 -15.17588 -14.88572 -14.77591 -14.54231 -14.23788 -14.01707 -13.67245 -13.55479 -13.11823 -13.01742 -12.87804 -12.60943 -12.53484 -12.49325 -12.40714 -12.14828 -11.79189 -11.77214 -11.62842 -11.52887 -11.48672 -11.38020 -11.36528 -11.20755 -10.75361 -9.25429 -8.28311 -6.32512 1.12355 1.36902 1.38549 1.50767 1.65396 2.37328 3.06838 3.18426 3.45187 3.57492 3.73287 3.99128 4.07228 4.21172 4.22670 4.29908 4.34816 4.42435 4.42954 4.47992 4.55912 4.62956 4.70800 4.84668 4.89133 4.91849 4.96633 5.02760 5.04414 5.12099 5.15284 5.19441 5.25539 5.30486 5.46773 5.55229 5.64313 5.68145 6.18330 6.31630 6.56606 6.69559 6.76022 7.31963 8.88620 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.058705 B = 0.002505 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.843382 B =11173.434650 C =11283.619438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.471 3.529 5 O -0.540 6.540 6 C -0.084 4.084 7 H 0.132 0.868 8 C -0.098 4.098 9 C -0.147 4.147 10 C 0.084 3.916 11 H 0.076 0.924 12 N -0.690 5.690 13 C 0.071 3.929 14 C -0.092 4.092 15 C -0.011 4.011 16 C -0.533 4.533 17 H 0.029 0.971 18 C -0.001 4.001 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.244 1.244 24 C -0.102 4.102 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.347 0.653 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.022 0.978 40 H 0.017 0.983 41 H 0.266 0.734 42 H 0.068 0.932 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.191 -18.606 3.974 32.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.316 3.684 5 O -0.430 6.430 6 C -0.103 4.103 7 H 0.150 0.850 8 C -0.136 4.136 9 C -0.186 4.186 10 C -0.027 4.027 11 H 0.094 0.906 12 N -0.321 5.321 13 C -0.058 4.058 14 C -0.130 4.130 15 C -0.049 4.049 16 C -0.571 4.571 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.594 5.594 20 Si 0.778 3.222 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.167 1.167 24 C -0.140 4.140 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.406 -19.280 3.799 32.118 hybrid contribution 0.276 0.653 0.665 0.973 sum -25.130 -18.626 4.464 31.597 Atomic orbital electron populations 1.21818 0.90371 1.04321 1.03790 1.23283 0.97143 0.79420 1.02398 1.86523 1.23945 1.33478 1.83510 1.24050 0.80568 0.92986 0.70843 1.90650 1.61148 1.44327 1.46910 1.22013 0.96141 0.88922 1.03242 0.85038 1.22372 1.00089 0.96861 0.94264 1.23099 0.94621 0.98317 1.02576 1.22209 0.92938 0.92703 0.94812 0.90614 1.60551 1.22237 1.22451 1.26911 1.21887 0.94477 0.95200 0.94261 1.21274 0.97046 0.96641 0.98025 1.19496 0.94845 0.94756 0.95780 1.21538 1.19361 1.21516 0.94723 0.95254 1.26095 0.95101 0.94463 1.04062 1.70083 1.24747 1.26270 1.38288 0.85589 0.79835 0.77640 0.79139 1.19292 1.20962 1.16730 1.22122 0.91670 0.98533 1.01685 0.91225 0.88375 0.91150 0.91557 0.91499 0.88363 0.91180 0.90627 0.90062 0.83363 0.94599 0.91682 0.93556 0.93235 0.96007 0.96473 0.92542 0.91358 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 71.98 0.74 -0.39 16 2 C 0.05 0.70 6.19 71.98 0.45 1.15 16 3 O -0.36 -6.24 10.22 -51.42 -0.53 -6.77 16 4 C 0.47 9.56 7.25 71.24 0.52 10.07 16 5 O -0.54 -14.49 15.17 21.98 0.33 -14.15 16 6 C -0.08 -1.36 3.36 -10.46 -0.04 -1.39 16 7 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 8 C -0.10 -1.31 6.32 31.89 0.20 -1.11 16 9 C -0.15 -2.29 6.46 31.67 0.20 -2.08 16 10 C 0.08 1.72 3.23 45.64 0.15 1.87 16 11 H 0.08 1.67 7.81 -2.39 -0.02 1.65 16 12 N -0.69 -17.37 6.17 -487.84 -3.01 -20.38 16 13 C 0.07 2.12 5.51 86.30 0.48 2.60 16 14 C -0.09 -3.58 5.41 30.59 0.17 -3.42 16 15 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 16 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 17 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 18 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 19 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 20 Si 0.95 44.74 27.47 68.60 1.88 46.62 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 24 C -0.10 -2.08 5.98 31.32 0.19 -1.89 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 26 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 29 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.19 7.56 -2.39 -0.02 1.17 16 34 H 0.35 7.92 8.11 -89.69 -0.73 7.19 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.98 8.07 -2.38 -0.02 1.97 16 37 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 40 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 41 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.07 1.63 6.85 -2.39 -0.02 1.62 16 43 H 0.08 1.73 7.92 -2.38 -0.02 1.71 16 Total: -1.00 -70.92 347.89 3.05 -67.88 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.18 Total: 13.19 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 3.88 Total: -25.81 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.71 Total: -80.95 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.19 Total: -20.92 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -70.92 3.05 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257026842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.678 kcal (2) G-P(sol) polarization free energy of solvation -70.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds