Wall clock time and date at job start Mon Mar 30 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47253 * 2 1 4 4 C 1.34232 * 117.00129 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99896 * 180.02562 * 4 3 2 7 7 H 1.08997 * 110.81901 * 56.66393 * 6 4 3 8 8 C 1.54891 * 110.75366 * 293.32376 * 6 4 3 9 9 C 1.54261 * 104.19266 * 203.74397 * 8 6 4 10 10 C 1.53872 * 106.60146 * 23.61358 * 9 8 6 11 11 H 1.09006 * 110.03174 * 240.71455 * 10 9 8 12 12 N 1.46902 * 110.03647 * 119.28581 * 10 9 8 13 13 C 1.46901 * 111.00100 * 186.78792 * 12 10 9 14 14 C 1.52993 * 109.46957 * 163.98362 * 13 12 10 15 15 C 1.46900 * 110.99975 * 62.82650 * 12 10 9 16 16 C 1.50705 * 109.46521 * 62.39046 * 15 12 10 17 17 H 1.07994 * 120.00114 * 4.59150 * 16 15 12 18 18 C 1.37879 * 119.99350 * 184.58546 * 16 15 12 19 19 N 1.31511 * 120.00068 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99453 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47214 * 60.00629 * 20 18 16 22 22 H 1.48508 * 109.46838 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47183 * 300.00205 * 20 18 16 24 24 C 1.54268 * 106.59837 * 359.97438 * 10 9 8 25 25 H 1.09004 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47423 * 300.00398 * 1 2 3 27 27 H 1.09003 * 109.47066 * 60.00449 * 1 2 3 28 28 H 1.08999 * 109.47765 * 239.99346 * 2 1 3 29 29 H 1.09003 * 109.47066 * 119.99551 * 2 1 3 30 30 H 1.08997 * 110.48237 * 85.06509 * 8 6 4 31 31 H 1.08999 * 110.59658 * 322.47829 * 8 6 4 32 32 H 1.08998 * 110.03289 * 264.32472 * 9 8 6 33 33 H 1.09007 * 110.03245 * 142.89904 * 9 8 6 34 34 H 1.08998 * 109.46849 * 283.98403 * 13 12 10 35 35 H 1.08998 * 109.46838 * 43.98328 * 13 12 10 36 36 H 1.08999 * 109.47439 * 59.69548 * 14 13 12 37 37 H 1.09007 * 109.47154 * 179.69691 * 14 13 12 38 38 H 1.09007 * 109.47668 * 299.69582 * 14 13 12 39 39 H 1.09000 * 109.46532 * 182.38367 * 15 12 10 40 40 H 1.08993 * 109.47314 * 302.39090 * 15 12 10 41 41 H 0.97005 * 119.99291 * 179.97438 * 19 18 16 42 42 H 1.09005 * 110.47841 * 95.07041 * 24 10 9 43 43 H 1.09000 * 110.48687 * 217.71059 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.5511 3.5092 0.8524 8 6 3.6011 3.6642 -1.3288 9 6 4.7007 4.7398 -1.4458 10 6 5.8883 4.2482 -0.5999 11 1 6.0991 4.9610 0.1974 12 7 7.0746 4.0771 -1.4493 13 6 8.1745 3.4570 -0.6987 14 6 9.2277 2.9330 -1.6769 15 6 7.4926 5.3583 -2.0340 16 6 7.8805 6.3104 -0.9320 17 1 7.8935 5.9728 0.0937 18 6 8.2188 7.6126 -1.2336 19 7 8.2026 8.0238 -2.4827 20 14 8.7003 8.7926 0.1322 21 1 9.8938 8.2672 0.8425 22 1 9.0157 10.1217 -0.4504 23 1 7.5736 8.9273 1.0901 24 6 5.4687 2.8913 0.0022 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.6162 4.1289 -1.2823 31 1 3.6553 2.9703 -2.1676 32 1 4.3351 5.6910 -1.0591 33 1 5.0045 4.8514 -2.4867 34 1 8.6274 4.1976 -0.0395 35 1 7.7874 2.6296 -0.1040 36 1 9.6109 3.7594 -2.2754 37 1 10.0465 2.4776 -1.1197 38 1 8.7761 2.1884 -2.3326 39 1 8.3468 5.1961 -2.6913 40 1 6.6682 5.7824 -2.6071 41 1 8.4403 8.9401 -2.6947 42 1 5.8259 2.0710 -0.6204 43 1 5.8471 2.7920 1.0196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257060313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:35 Heat of formation + Delta-G solvation = -100.790754 kcal Electronic energy + Delta-G solvation = -21460.117548 eV Core-core repulsion = 18311.731775 eV Total energy + Delta-G solvation = -3148.385773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58294 -38.43503 -36.61011 -35.17373 -32.47602 -31.90665 -30.12724 -28.54860 -27.89501 -25.51629 -23.73317 -23.03978 -22.01890 -20.47841 -19.85999 -18.81067 -17.60344 -16.68997 -16.42313 -16.14344 -15.30739 -14.96808 -14.70285 -14.10352 -13.88476 -13.51954 -13.05724 -12.97505 -12.87171 -12.50567 -12.12419 -11.89941 -11.76373 -11.64685 -11.40218 -11.16603 -10.99278 -10.92337 -10.72788 -10.65080 -10.64190 -10.42876 -10.22617 -10.05489 -10.00047 -9.88815 -9.83163 -9.43137 -8.39848 -7.10012 -6.00738 -4.09296 2.27984 2.66374 3.28327 3.33746 3.35876 4.41206 4.60486 4.71413 4.75224 4.81760 4.88550 5.06331 5.21762 5.25271 5.29434 5.52789 5.54820 5.72771 5.77102 5.81020 5.83600 5.96149 5.98187 6.11075 6.19003 6.20965 6.35454 6.42926 6.46809 6.59735 6.64789 6.79890 6.86589 6.91581 7.01808 7.34150 7.57289 7.82080 7.93222 8.13895 8.33008 8.39461 9.01185 9.56736 11.03836 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.004258 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.209584 B = 6574.403228 C = 7047.734838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.472 3.528 5 O -0.508 6.508 6 C -0.088 4.088 7 H 0.110 0.890 8 C -0.104 4.104 9 C -0.110 4.110 10 C 0.090 3.910 11 H 0.054 0.946 12 N -0.535 5.535 13 C 0.050 3.950 14 C -0.139 4.139 15 C 0.183 3.817 16 C -0.546 4.546 17 H 0.055 0.945 18 C 0.066 3.934 19 N -0.891 5.891 20 Si 0.886 3.114 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.103 4.103 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.262 0.738 42 H 0.088 0.912 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 -12.074 4.409 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.315 3.685 5 O -0.395 6.395 6 C -0.108 4.108 7 H 0.128 0.872 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.019 4.019 11 H 0.072 0.928 12 N -0.259 5.259 13 C -0.079 4.079 14 C -0.197 4.197 15 C 0.058 3.942 16 C -0.585 4.585 17 H 0.073 0.927 18 C -0.137 4.137 19 N -0.530 5.530 20 Si 0.714 3.286 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.141 4.141 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.213 -12.547 3.889 17.936 hybrid contribution 0.581 1.180 1.475 1.976 sum -11.632 -11.367 5.364 17.126 Atomic orbital electron populations 1.21796 0.92774 1.02780 1.03537 1.22985 0.95267 0.80742 1.02460 1.86537 1.25038 1.31893 1.84154 1.23865 0.80125 0.92889 0.71650 1.90646 1.60392 1.43224 1.45262 1.22101 0.97634 0.89070 1.01970 0.87213 1.22305 0.99632 0.97927 0.94308 1.22128 0.93485 0.96863 1.02281 1.21999 0.91482 0.93691 0.94743 0.92833 1.62693 1.04060 1.27125 1.32072 1.21942 0.92647 0.97545 0.95724 1.21682 0.97621 1.00831 0.99572 1.19801 0.96359 0.83463 0.94603 1.21690 1.46487 0.96152 0.94171 0.92678 1.24933 0.95392 0.98145 0.95202 1.69931 1.48374 1.17406 1.17247 0.86760 0.79044 0.80379 0.82441 1.20342 1.21253 1.20319 1.22490 0.90365 0.99937 1.01277 0.90430 0.91533 0.91427 0.91332 0.91455 0.91036 0.91407 0.91640 0.89996 0.93770 0.92979 0.92209 0.93893 0.93240 0.95211 0.94529 0.92825 0.89384 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.36 -4.53 10.22 -39.26 -0.40 -4.94 16 4 C 0.47 6.80 7.26 36.01 0.26 7.06 16 5 O -0.51 -8.61 15.47 -18.75 -0.29 -8.90 16 6 C -0.09 -1.22 3.40 -89.79 -0.31 -1.53 16 7 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 8 C -0.10 -1.44 6.26 -25.07 -0.16 -1.60 16 9 C -0.11 -1.88 5.92 -25.62 -0.15 -2.03 16 10 C 0.09 1.68 2.40 -66.59 -0.16 1.52 16 11 H 0.05 1.11 6.71 -51.93 -0.35 0.76 16 12 N -0.54 -11.24 4.43 -226.74 -1.00 -12.24 16 13 C 0.05 0.98 5.32 -3.83 -0.02 0.96 16 14 C -0.14 -2.54 9.97 37.15 0.37 -2.17 16 15 C 0.18 4.57 4.71 -4.97 -0.02 4.55 16 16 C -0.55 -14.61 7.41 -34.44 -0.26 -14.86 16 17 H 0.06 1.47 5.94 -52.49 -0.31 1.16 16 18 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.10 -1.66 4.00 -25.08 -0.10 -1.76 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.55 6.59 -51.92 -0.34 1.21 16 34 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 35 H 0.05 0.93 6.24 -51.93 -0.32 0.61 16 36 H 0.06 1.20 6.73 -51.93 -0.35 0.85 16 37 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.03 0.81 6.64 -51.93 -0.35 0.46 16 40 H 0.04 0.97 6.44 -51.93 -0.33 0.64 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.09 1.56 6.92 -51.93 -0.36 1.20 16 43 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -29.71 337.13 -8.16 -37.88 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.24 Total: 0.01 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.03 Total: -7.99 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.27 Total: -37.30 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.69 Total: -13.84 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.71 -8.16 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257060313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.915 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds