Wall clock time and date at job start Mon Mar 30 2020 01:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47253 * 2 1 4 4 C 1.34232 * 117.00129 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99896 * 180.02562 * 4 3 2 7 7 H 1.08997 * 110.81901 * 56.66393 * 6 4 3 8 8 C 1.54891 * 110.75366 * 293.32376 * 6 4 3 9 9 C 1.54261 * 104.19266 * 203.74397 * 8 6 4 10 10 C 1.53872 * 106.60146 * 23.61358 * 9 8 6 11 11 H 1.09006 * 110.03174 * 240.71455 * 10 9 8 12 12 N 1.46902 * 110.03647 * 119.28581 * 10 9 8 13 13 C 1.46901 * 111.00100 * 186.78792 * 12 10 9 14 14 C 1.52993 * 109.46957 * 163.98362 * 13 12 10 15 15 C 1.46900 * 110.99975 * 62.82650 * 12 10 9 16 16 C 1.50705 * 109.46521 * 62.39046 * 15 12 10 17 17 H 1.07994 * 120.00114 * 4.59150 * 16 15 12 18 18 C 1.37879 * 119.99350 * 184.58546 * 16 15 12 19 19 N 1.31511 * 120.00068 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99453 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47214 * 60.00629 * 20 18 16 22 22 H 1.48508 * 109.46838 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47183 * 300.00205 * 20 18 16 24 24 C 1.54268 * 106.59837 * 359.97438 * 10 9 8 25 25 H 1.09004 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47423 * 300.00398 * 1 2 3 27 27 H 1.09003 * 109.47066 * 60.00449 * 1 2 3 28 28 H 1.08999 * 109.47765 * 239.99346 * 2 1 3 29 29 H 1.09003 * 109.47066 * 119.99551 * 2 1 3 30 30 H 1.08997 * 110.48237 * 85.06509 * 8 6 4 31 31 H 1.08999 * 110.59658 * 322.47829 * 8 6 4 32 32 H 1.08998 * 110.03289 * 264.32472 * 9 8 6 33 33 H 1.09007 * 110.03245 * 142.89904 * 9 8 6 34 34 H 1.08998 * 109.46849 * 283.98403 * 13 12 10 35 35 H 1.08998 * 109.46838 * 43.98328 * 13 12 10 36 36 H 1.08999 * 109.47439 * 59.69548 * 14 13 12 37 37 H 1.09007 * 109.47154 * 179.69691 * 14 13 12 38 38 H 1.09007 * 109.47668 * 299.69582 * 14 13 12 39 39 H 1.09000 * 109.46532 * 182.38367 * 15 12 10 40 40 H 1.08993 * 109.47314 * 302.39090 * 15 12 10 41 41 H 0.97005 * 119.99291 * 179.97438 * 19 18 16 42 42 H 1.09005 * 110.47841 * 95.07041 * 24 10 9 43 43 H 1.09000 * 110.48687 * 217.71059 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.5511 3.5092 0.8524 8 6 3.6011 3.6642 -1.3288 9 6 4.7007 4.7398 -1.4458 10 6 5.8883 4.2482 -0.5999 11 1 6.0991 4.9610 0.1974 12 7 7.0746 4.0771 -1.4493 13 6 8.1745 3.4570 -0.6987 14 6 9.2277 2.9330 -1.6769 15 6 7.4926 5.3583 -2.0340 16 6 7.8805 6.3104 -0.9320 17 1 7.8935 5.9728 0.0937 18 6 8.2188 7.6126 -1.2336 19 7 8.2026 8.0238 -2.4827 20 14 8.7003 8.7926 0.1322 21 1 9.8938 8.2672 0.8425 22 1 9.0157 10.1217 -0.4504 23 1 7.5736 8.9273 1.0901 24 6 5.4687 2.8913 0.0022 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.6162 4.1289 -1.2823 31 1 3.6553 2.9703 -2.1676 32 1 4.3351 5.6910 -1.0591 33 1 5.0045 4.8514 -2.4867 34 1 8.6274 4.1976 -0.0395 35 1 7.7874 2.6296 -0.1040 36 1 9.6109 3.7594 -2.2754 37 1 10.0465 2.4776 -1.1197 38 1 8.7761 2.1884 -2.3326 39 1 8.3468 5.1961 -2.6913 40 1 6.6682 5.7824 -2.6071 41 1 8.4403 8.9401 -2.6947 42 1 5.8259 2.0710 -0.6204 43 1 5.8471 2.7920 1.0196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257060313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:34 Heat of formation + Delta-G solvation = -117.790949 kcal Electronic energy + Delta-G solvation = -21460.854732 eV Core-core repulsion = 18311.731775 eV Total energy + Delta-G solvation = -3149.122957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.70613 -39.88190 -37.74959 -36.66552 -34.52774 -32.66943 -31.63679 -29.91725 -29.52716 -27.28211 -24.88331 -24.63651 -23.09253 -22.04622 -21.01602 -20.43134 -18.78785 -18.19314 -17.75183 -17.50677 -16.75898 -16.55186 -16.26960 -15.63472 -15.07109 -14.70351 -14.54580 -14.27055 -14.21455 -13.64367 -13.43504 -13.25886 -13.06405 -12.97431 -12.83705 -12.60288 -12.55913 -12.41066 -12.29783 -12.13798 -11.91370 -11.81606 -11.71297 -11.61006 -11.49789 -11.45893 -11.27162 -11.21757 -10.53674 -8.92520 -8.09906 -6.28654 1.16153 1.38410 1.39108 1.46984 1.67854 2.39677 3.14058 3.36680 3.45916 3.58395 3.95724 4.03169 4.11009 4.16413 4.33988 4.37520 4.46722 4.49549 4.55805 4.64331 4.65123 4.74378 4.83765 4.87458 4.95163 4.96307 5.06360 5.11571 5.17242 5.26009 5.29811 5.32802 5.39052 5.39926 5.42727 5.48356 5.50017 5.82737 6.13857 6.35710 6.67600 6.74161 6.93407 7.41749 8.91311 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.004258 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.209584 B = 6574.403228 C = 7047.734838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.357 6.357 4 C 0.478 3.522 5 O -0.537 6.537 6 C -0.082 4.082 7 H 0.135 0.865 8 C -0.091 4.091 9 C -0.109 4.109 10 C 0.086 3.914 11 H 0.033 0.967 12 N -0.536 5.536 13 C 0.049 3.951 14 C -0.133 4.133 15 C 0.200 3.800 16 C -0.550 4.550 17 H 0.054 0.946 18 C 0.014 3.986 19 N -0.926 5.926 20 Si 0.951 3.049 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.268 1.268 24 C -0.093 4.093 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.002 0.998 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.074 0.926 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 -12.862 5.978 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.322 3.678 5 O -0.427 6.427 6 C -0.101 4.101 7 H 0.153 0.847 8 C -0.129 4.129 9 C -0.147 4.147 10 C -0.023 4.023 11 H 0.051 0.949 12 N -0.260 5.260 13 C -0.079 4.079 14 C -0.191 4.191 15 C 0.074 3.926 16 C -0.589 4.589 17 H 0.073 0.927 18 C -0.185 4.185 19 N -0.566 5.566 20 Si 0.776 3.224 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.131 4.131 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.020 0.980 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.702 -13.348 5.469 19.896 hybrid contribution 1.004 1.351 0.969 1.943 sum -12.698 -11.997 6.439 18.618 Atomic orbital electron populations 1.21817 0.90302 1.04335 1.03772 1.23303 0.97184 0.79376 1.02453 1.86527 1.23756 1.33589 1.83543 1.23797 0.80614 0.92475 0.70894 1.90641 1.61183 1.44092 1.46780 1.22044 0.95832 0.89395 1.02818 0.84706 1.22207 0.99611 0.96762 0.94309 1.22069 0.94106 0.98103 1.00375 1.22086 0.91027 0.95053 0.94112 0.94897 1.62658 1.05211 1.24850 1.33241 1.22011 0.92565 0.97504 0.95802 1.21634 0.98034 1.00082 0.99350 1.19417 0.94350 0.85003 0.93873 1.21922 1.45902 0.96620 0.94421 0.92743 1.25735 0.95460 0.99946 0.97398 1.70056 1.49476 1.17851 1.19200 0.85722 0.78919 0.78110 0.79621 1.19868 1.20931 1.19350 1.22322 0.92382 0.97337 1.01096 0.88229 0.91137 0.91308 0.91616 0.91312 0.88286 0.91701 0.91758 0.92390 0.95945 0.90725 0.94859 0.91244 0.92381 0.97984 0.96710 0.92768 0.90785 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.29 71.98 0.74 -0.91 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.36 -8.18 10.22 -51.43 -0.53 -8.70 16 4 C 0.48 12.82 7.26 71.24 0.52 13.34 16 5 O -0.54 -17.48 15.47 21.96 0.34 -17.14 16 6 C -0.08 -2.08 3.40 -10.25 -0.03 -2.12 16 7 H 0.14 2.81 8.14 -2.39 -0.02 2.80 16 8 C -0.09 -2.37 6.26 31.67 0.20 -2.17 16 9 C -0.11 -3.71 5.92 31.32 0.19 -3.52 16 10 C 0.09 3.22 2.40 45.64 0.11 3.33 16 11 H 0.03 1.37 6.71 -2.38 -0.02 1.36 16 12 N -0.54 -22.95 4.43 -871.29 -3.86 -26.81 16 13 C 0.05 1.94 5.32 86.30 0.46 2.40 16 14 C -0.13 -4.84 9.97 71.98 0.72 -4.12 16 15 C 0.20 10.39 4.71 85.56 0.40 10.79 16 16 C -0.55 -30.02 7.41 25.60 0.19 -29.84 16 17 H 0.05 2.94 5.94 -2.91 -0.02 2.92 16 18 C 0.01 0.77 5.46 84.66 0.46 1.23 16 19 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 20 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 C -0.09 -2.90 4.00 31.66 0.13 -2.77 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.74 8.04 -2.39 -0.02 1.72 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.26 6.59 -2.38 -0.02 2.24 16 34 H 0.02 0.98 6.20 -2.39 -0.01 0.96 16 35 H 0.07 2.60 6.24 -2.39 -0.01 2.59 16 36 H 0.03 1.36 6.73 -2.39 -0.02 1.34 16 37 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.00 0.12 6.64 -2.39 -0.02 0.10 16 40 H 0.01 0.83 6.44 -2.39 -0.02 0.81 16 41 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 42 H 0.07 2.54 6.92 -2.38 -0.02 2.53 16 43 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -64.75 337.13 3.76 -60.99 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.97 Total: 13.50 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 4.52 Total: -12.99 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.57 Total: -81.30 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.19 Total: -25.84 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -64.75 3.76 -60.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257060313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.799 kcal (2) G-P(sol) polarization free energy of solvation -64.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds