Wall clock time and date at job start Mon Mar 30 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.46950 * 2 1 4 4 C 1.34229 * 117.00061 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99768 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00200 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47297 * 184.65285 * 6 4 3 8 8 C 1.46905 * 111.00196 * 164.05091 * 7 6 4 9 9 C 1.50693 * 109.46955 * 199.49411 * 8 7 6 10 10 H 1.08000 * 120.00661 * 5.17998 * 9 8 7 11 11 C 1.37883 * 119.99633 * 185.18607 * 9 8 7 12 12 N 1.31515 * 119.99646 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00267 * 359.97438 * 11 9 8 14 14 H 1.48492 * 109.47351 * 89.99579 * 13 11 9 15 15 H 1.48502 * 109.46962 * 210.00287 * 13 11 9 16 16 H 1.48502 * 109.46841 * 330.00017 * 13 11 9 17 17 C 1.46900 * 111.00021 * 288.00271 * 7 6 4 18 18 C 1.53000 * 109.47378 * 289.31898 * 17 7 6 19 19 C 1.53001 * 109.47392 * 179.97438 * 18 17 7 20 20 C 1.52999 * 109.46916 * 59.99894 * 19 18 17 21 21 C 1.52991 * 109.47274 * 300.00117 * 20 19 18 22 22 C 1.52998 * 109.47302 * 169.32001 * 17 7 6 23 23 H 1.08994 * 109.47187 * 300.00025 * 1 2 3 24 24 H 1.08999 * 109.46877 * 60.00565 * 1 2 3 25 25 H 1.09005 * 109.46525 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47611 * 239.99398 * 2 1 3 27 27 H 1.08999 * 109.46877 * 119.99434 * 2 1 3 28 28 H 1.09003 * 109.47023 * 64.65691 * 6 4 3 29 29 H 1.08994 * 109.47348 * 304.65685 * 6 4 3 30 30 H 1.08996 * 109.46682 * 319.48993 * 8 7 6 31 31 H 1.09004 * 109.46962 * 79.48826 * 8 7 6 32 32 H 0.96996 * 119.99871 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47343 * 49.31870 * 17 7 6 34 34 H 1.08999 * 109.47338 * 300.00058 * 18 17 7 35 35 H 1.09007 * 109.47227 * 59.99952 * 18 17 7 36 36 H 1.09001 * 109.47181 * 299.99611 * 19 18 17 37 37 H 1.08997 * 109.47094 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47104 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.47360 * 60.00412 * 20 19 18 40 40 H 1.08999 * 109.47387 * 299.99960 * 21 20 19 41 41 H 1.09007 * 109.47325 * 179.97438 * 21 20 19 42 42 H 1.09006 * 109.46635 * 300.00013 * 22 17 7 43 43 H 1.09001 * 109.47507 * 59.99700 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3834 2.8623 -0.1140 8 6 5.9496 4.1633 -0.4948 9 6 7.3322 3.9633 -1.0598 10 1 7.7163 2.9647 -1.2070 11 6 8.1071 5.0554 -1.3887 12 7 9.3139 4.8809 -1.8813 13 14 7.4427 6.7826 -1.1347 14 1 7.7972 7.2539 0.2281 15 1 8.0370 7.6950 -2.1444 16 1 5.9654 6.7719 -1.2859 17 6 5.9832 2.3722 1.1342 18 6 5.8580 3.4465 2.2164 19 6 6.4822 2.9358 3.5166 20 6 7.9603 2.6178 3.2822 21 6 8.0855 1.5436 2.2001 22 6 7.4614 2.0547 0.8994 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.6534 3.4416 0.9276 29 1 3.5192 3.4963 -0.8464 30 1 5.3137 4.6300 -1.2471 31 1 6.0054 4.8064 0.3835 32 1 9.8589 5.6491 -2.1130 33 1 5.4645 1.4695 1.4567 34 1 6.3768 4.3493 1.8940 35 1 4.8049 3.6727 2.3837 36 1 5.9630 2.0332 3.8389 37 1 6.3934 3.7013 4.2874 38 1 8.4052 2.2544 4.2086 39 1 8.4796 3.5204 2.9600 40 1 7.5664 0.6410 2.5223 41 1 9.1387 1.3174 2.0327 42 1 7.5505 1.2893 0.1284 43 1 7.9802 2.9575 0.5769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257461112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:06 Heat of formation + Delta-G solvation = -87.502391 kcal Electronic energy + Delta-G solvation = -22120.412806 eV Core-core repulsion = 18972.603260 eV Total energy + Delta-G solvation = -3147.809547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28298 -38.74976 -36.36714 -35.04027 -32.56722 -31.79543 -30.18858 -29.28635 -28.59478 -25.59947 -23.10471 -22.58872 -21.78137 -21.01476 -19.89344 -18.67603 -17.40130 -16.79643 -16.52003 -15.85068 -15.34846 -14.63132 -14.23640 -14.17796 -13.83477 -13.60804 -13.42051 -13.07111 -12.83494 -12.55303 -12.48264 -11.99113 -11.83212 -11.61978 -11.52565 -11.50492 -11.20664 -10.91459 -10.69637 -10.53674 -10.41952 -10.38427 -10.17347 -9.96373 -9.78126 -9.54008 -9.38648 -8.93342 -8.49424 -7.37842 -6.04513 -3.97998 2.57592 2.81382 3.25788 3.34686 3.35446 4.40534 4.66388 4.85389 4.87526 5.02644 5.20699 5.22535 5.24160 5.30812 5.44842 5.50773 5.62299 5.65184 5.67717 5.82266 5.84688 5.89833 6.01043 6.10486 6.11450 6.24080 6.30518 6.45769 6.49687 6.62407 6.64472 6.73356 6.82819 6.93080 6.96004 7.23895 7.54803 7.66843 7.85120 7.98230 8.18092 8.65214 9.07882 9.55646 11.07361 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.006371 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.574963 B = 4393.542973 C = 5339.839961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.460 3.540 5 O -0.486 6.486 6 C 0.058 3.942 7 N -0.509 5.509 8 C 0.156 3.844 9 C -0.502 4.502 10 H 0.094 0.906 11 C 0.069 3.931 12 N -0.897 5.897 13 Si 0.868 3.132 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.101 3.899 18 C -0.160 4.160 19 C -0.108 4.108 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.122 4.122 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.025 0.975 31 H 0.002 0.998 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.927 -5.205 8.241 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.301 3.699 5 O -0.371 6.371 6 C -0.072 4.072 7 N -0.232 5.232 8 C 0.030 3.970 9 C -0.540 4.540 10 H 0.112 0.888 11 C -0.133 4.133 12 N -0.536 5.536 13 Si 0.695 3.305 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.007 4.007 18 C -0.199 4.199 19 C -0.146 4.146 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.159 4.159 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.043 0.957 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.453 -5.768 7.767 15.770 hybrid contribution -0.537 1.391 0.708 1.650 sum -12.991 -4.377 8.475 16.117 Atomic orbital electron populations 1.21790 0.93000 1.02648 1.03364 1.22918 0.94984 0.80902 1.02424 1.86498 1.25443 1.31839 1.84808 1.23999 0.79885 0.93385 0.72619 1.90641 1.59960 1.42856 1.43629 1.21647 0.92492 0.89532 1.03528 1.61899 0.98926 1.30565 1.31859 1.20398 0.96899 0.84780 0.94889 1.21136 0.96647 0.95840 1.40404 0.88811 1.24870 0.94820 0.98420 0.95157 1.69878 1.09202 1.30580 1.43896 0.86981 0.79684 0.85653 0.78180 1.20338 1.21244 1.19320 1.21583 0.97005 0.95631 0.86501 1.22323 0.99470 1.01665 0.96417 1.21397 0.96359 0.99970 0.96916 1.21516 0.96001 0.99831 0.98157 1.21568 1.00324 0.97281 0.96326 1.22096 0.94137 1.04605 0.95039 0.91660 0.91539 0.90533 0.91361 0.91590 0.91300 0.87333 0.95736 0.98034 0.92674 0.91293 0.90249 0.93462 0.92868 0.92934 0.93140 0.91698 0.93507 0.92460 0.92203 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.37 -5.34 10.22 -39.26 -0.40 -5.74 16 4 C 0.46 7.84 7.68 36.00 0.28 8.11 16 5 O -0.49 -9.66 14.45 -18.75 -0.27 -9.93 16 6 C 0.06 0.98 5.47 -4.98 -0.03 0.95 16 7 N -0.51 -10.53 4.13 -229.52 -0.95 -11.48 16 8 C 0.16 3.55 3.58 -4.98 -0.02 3.53 16 9 C -0.50 -13.44 7.06 -34.44 -0.24 -13.68 16 10 H 0.09 2.76 6.30 -52.49 -0.33 2.43 16 11 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 12 N -0.90 -26.49 13.96 55.43 0.77 -25.71 16 13 Si 0.87 20.63 27.37 -169.99 -4.65 15.98 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.11 6.69 56.52 0.38 -5.73 16 17 C 0.10 1.96 1.85 -67.71 -0.13 1.84 16 18 C -0.16 -2.77 4.53 -26.73 -0.12 -2.89 16 19 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 20 C -0.12 -1.85 5.92 -26.74 -0.16 -2.01 16 21 C -0.12 -2.02 5.92 -26.71 -0.16 -2.18 16 22 C -0.12 -2.52 3.94 -26.71 -0.11 -2.63 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 27 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.07 1.04 6.28 -51.93 -0.33 0.72 16 29 H 0.11 1.70 7.68 -51.93 -0.40 1.30 16 30 H 0.02 0.56 7.07 -51.93 -0.37 0.20 16 31 H 0.00 0.05 4.53 -51.93 -0.24 -0.19 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.36 6.21 -51.93 -0.32 1.04 16 34 H 0.08 1.53 6.00 -51.93 -0.31 1.22 16 35 H 0.05 0.74 6.52 -51.93 -0.34 0.41 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.35 7.92 -51.93 -0.41 0.93 16 43 H 0.12 2.87 5.00 -51.93 -0.26 2.61 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -29.97 326.23 -8.02 -37.99 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.11 Total: 2.83 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.32 Total: -8.86 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.17 Total: -37.19 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.67 Total: -15.67 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.65 Total: 15.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.97 -8.02 -37.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257461112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.513 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds