Wall clock time and date at job start Mon Mar 30 2020 01:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.46950 * 2 1 4 4 C 1.34229 * 117.00061 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99768 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00200 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47297 * 184.65285 * 6 4 3 8 8 C 1.46905 * 111.00196 * 164.05091 * 7 6 4 9 9 C 1.50693 * 109.46955 * 199.49411 * 8 7 6 10 10 H 1.08000 * 120.00661 * 5.17998 * 9 8 7 11 11 C 1.37883 * 119.99633 * 185.18607 * 9 8 7 12 12 N 1.31515 * 119.99646 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00267 * 359.97438 * 11 9 8 14 14 H 1.48492 * 109.47351 * 89.99579 * 13 11 9 15 15 H 1.48502 * 109.46962 * 210.00287 * 13 11 9 16 16 H 1.48502 * 109.46841 * 330.00017 * 13 11 9 17 17 C 1.46900 * 111.00021 * 288.00271 * 7 6 4 18 18 C 1.53000 * 109.47378 * 289.31898 * 17 7 6 19 19 C 1.53001 * 109.47392 * 179.97438 * 18 17 7 20 20 C 1.52999 * 109.46916 * 59.99894 * 19 18 17 21 21 C 1.52991 * 109.47274 * 300.00117 * 20 19 18 22 22 C 1.52998 * 109.47302 * 169.32001 * 17 7 6 23 23 H 1.08994 * 109.47187 * 300.00025 * 1 2 3 24 24 H 1.08999 * 109.46877 * 60.00565 * 1 2 3 25 25 H 1.09005 * 109.46525 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47611 * 239.99398 * 2 1 3 27 27 H 1.08999 * 109.46877 * 119.99434 * 2 1 3 28 28 H 1.09003 * 109.47023 * 64.65691 * 6 4 3 29 29 H 1.08994 * 109.47348 * 304.65685 * 6 4 3 30 30 H 1.08996 * 109.46682 * 319.48993 * 8 7 6 31 31 H 1.09004 * 109.46962 * 79.48826 * 8 7 6 32 32 H 0.96996 * 119.99871 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47343 * 49.31870 * 17 7 6 34 34 H 1.08999 * 109.47338 * 300.00058 * 18 17 7 35 35 H 1.09007 * 109.47227 * 59.99952 * 18 17 7 36 36 H 1.09001 * 109.47181 * 299.99611 * 19 18 17 37 37 H 1.08997 * 109.47094 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47104 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.47360 * 60.00412 * 20 19 18 40 40 H 1.08999 * 109.47387 * 299.99960 * 21 20 19 41 41 H 1.09007 * 109.47325 * 179.97438 * 21 20 19 42 42 H 1.09006 * 109.46635 * 300.00013 * 22 17 7 43 43 H 1.09001 * 109.47507 * 59.99700 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3834 2.8623 -0.1140 8 6 5.9496 4.1633 -0.4948 9 6 7.3322 3.9633 -1.0598 10 1 7.7163 2.9647 -1.2070 11 6 8.1071 5.0554 -1.3887 12 7 9.3139 4.8809 -1.8813 13 14 7.4427 6.7826 -1.1347 14 1 7.7972 7.2539 0.2281 15 1 8.0370 7.6950 -2.1444 16 1 5.9654 6.7719 -1.2859 17 6 5.9832 2.3722 1.1342 18 6 5.8580 3.4465 2.2164 19 6 6.4822 2.9358 3.5166 20 6 7.9603 2.6178 3.2822 21 6 8.0855 1.5436 2.2001 22 6 7.4614 2.0547 0.8994 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.6534 3.4416 0.9276 29 1 3.5192 3.4963 -0.8464 30 1 5.3137 4.6300 -1.2471 31 1 6.0054 4.8064 0.3835 32 1 9.8589 5.6491 -2.1130 33 1 5.4645 1.4695 1.4567 34 1 6.3768 4.3493 1.8940 35 1 4.8049 3.6727 2.3837 36 1 5.9630 2.0332 3.8389 37 1 6.3934 3.7013 4.2874 38 1 8.4052 2.2544 4.2086 39 1 8.4796 3.5204 2.9600 40 1 7.5664 0.6410 2.5223 41 1 9.1387 1.3174 2.0327 42 1 7.5505 1.2893 0.1284 43 1 7.9802 2.9575 0.5769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257461112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:05 Heat of formation + Delta-G solvation = -105.900283 kcal Electronic energy + Delta-G solvation = -22121.210599 eV Core-core repulsion = 18972.603260 eV Total energy + Delta-G solvation = -3148.607339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61755 -40.20061 -37.63689 -36.53845 -34.59804 -32.70518 -31.65017 -30.67622 -30.37610 -27.17540 -24.23703 -24.06189 -23.31046 -22.35332 -21.30089 -20.24953 -18.90078 -18.55779 -17.74860 -17.22861 -16.66530 -16.28329 -15.99602 -15.49124 -15.24474 -14.95494 -14.84269 -14.42644 -14.25110 -13.83638 -13.59640 -13.46108 -13.25467 -12.98855 -12.90364 -12.72441 -12.57899 -12.47875 -12.43154 -12.04970 -11.90090 -11.80251 -11.59681 -11.48350 -11.27541 -11.08218 -10.98125 -10.75047 -10.56441 -8.94299 -8.17024 -6.14422 1.24942 1.38536 1.40526 1.49847 1.63491 2.40878 3.14295 3.18056 3.80720 3.89881 3.95007 4.02066 4.12762 4.14005 4.21129 4.32151 4.37419 4.38813 4.49296 4.59154 4.68109 4.74358 4.80336 4.85660 4.89021 4.94622 4.96064 5.04499 5.16235 5.17707 5.31098 5.33538 5.40961 5.46136 5.48993 5.58632 5.64776 5.87529 6.05406 6.38729 6.67363 6.87484 6.89666 7.42298 8.98613 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.006371 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.574963 B = 4393.542973 C = 5339.839961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.362 6.362 4 C 0.466 3.534 5 O -0.523 6.523 6 C 0.055 3.945 7 N -0.536 5.536 8 C 0.166 3.834 9 C -0.496 4.496 10 H 0.048 0.952 11 C 0.009 3.991 12 N -0.949 5.949 13 Si 0.935 3.065 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.244 1.244 17 C 0.106 3.894 18 C -0.155 4.155 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.115 4.115 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.031 0.969 31 H 0.015 0.985 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.879 -4.349 10.401 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.279 6.279 4 C 0.309 3.691 5 O -0.411 6.411 6 C -0.073 4.073 7 N -0.260 5.260 8 C 0.040 3.960 9 C -0.534 4.534 10 H 0.066 0.934 11 C -0.188 4.188 12 N -0.591 5.591 13 Si 0.759 3.241 14 H -0.194 1.194 15 H -0.216 1.216 16 H -0.168 1.168 17 C -0.002 4.002 18 C -0.194 4.194 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.153 4.153 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.142 0.858 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.457 -4.920 9.941 19.025 hybrid contribution 0.358 0.947 -0.007 1.013 sum -15.099 -3.973 9.934 18.505 Atomic orbital electron populations 1.21809 0.90030 1.04354 1.03793 1.23261 0.97244 0.79383 1.02222 1.86488 1.23722 1.33643 1.84092 1.23966 0.80524 0.92938 0.71681 1.90637 1.60981 1.43916 1.45520 1.21727 0.89928 0.90096 1.05579 1.61674 1.01512 1.29495 1.33304 1.20159 0.94535 0.86184 0.95155 1.21298 0.98685 0.93915 1.39537 0.93360 1.25709 0.94912 1.03045 0.95094 1.70051 1.11050 1.31809 1.46189 0.85893 0.80219 0.79767 0.78208 1.19363 1.21611 1.16785 1.21501 0.95290 0.96452 0.86937 1.22253 1.00863 0.99707 0.96577 1.21405 0.95306 1.01319 0.96208 1.21504 0.97022 0.98295 0.98439 1.21527 0.99937 0.98490 0.95190 1.21879 0.95800 1.01684 0.95947 0.90981 0.91312 0.88192 0.92033 0.91495 0.88521 0.85822 0.95136 0.96784 0.92815 0.91313 0.92392 0.91153 0.91403 0.90501 0.90246 0.93535 0.92075 0.92828 0.95819 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 1.13 6.19 71.98 0.45 1.58 16 3 O -0.36 -9.75 10.22 -51.41 -0.53 -10.28 16 4 C 0.47 15.24 7.68 71.24 0.55 15.78 16 5 O -0.52 -20.69 14.45 21.95 0.32 -20.38 16 6 C 0.06 1.76 5.47 85.56 0.47 2.23 16 7 N -0.54 -22.03 4.13 -880.08 -3.64 -25.67 16 8 C 0.17 7.48 3.58 85.55 0.31 7.78 16 9 C -0.50 -27.57 7.06 25.60 0.18 -27.39 16 10 H 0.05 3.06 6.30 -2.91 -0.02 3.04 16 11 C 0.01 0.51 5.47 84.66 0.46 0.97 16 12 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 13 Si 0.93 42.51 27.37 68.60 1.88 44.39 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 15 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 16 H -0.24 -10.09 6.69 99.48 0.67 -9.42 16 17 C 0.11 4.09 1.85 44.91 0.08 4.17 16 18 C -0.16 -5.02 4.53 30.59 0.14 -4.88 16 19 C -0.10 -2.82 5.92 30.59 0.18 -2.64 16 20 C -0.12 -3.43 5.92 30.59 0.18 -3.25 16 21 C -0.11 -3.93 5.92 30.61 0.18 -3.75 16 22 C -0.12 -5.02 3.94 30.61 0.12 -4.90 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 27 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 28 H 0.10 2.56 6.28 -2.39 -0.01 2.55 16 29 H 0.12 3.55 7.68 -2.39 -0.02 3.53 16 30 H 0.03 1.35 7.07 -2.39 -0.02 1.33 16 31 H 0.01 0.63 4.53 -2.39 -0.01 0.62 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.07 2.67 6.21 -2.39 -0.01 2.66 16 34 H 0.06 2.14 6.00 -2.39 -0.01 2.12 16 35 H 0.07 1.94 6.52 -2.38 -0.02 1.93 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.02 1.14 7.92 -2.38 -0.02 1.12 16 43 H 0.08 4.17 5.00 -2.39 -0.01 4.15 16 Total: -1.00 -68.46 326.23 3.31 -65.16 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.94 Total: 20.65 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.04 Total: -15.51 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -3.34 Total: -84.03 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.21 Total: -30.66 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.39 kcal Total: -68.46 3.31 -65.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257461112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.745 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds