Wall clock time and date at job start Mon Mar 30 2020 01:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45201 * 109.47507 * 2 1 4 4 C 1.34222 * 116.99923 * 179.97438 * 3 2 1 5 5 O 1.20836 * 120.00175 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00130 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47337 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46886 * 185.00101 * 7 6 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 N 1.46906 * 109.46897 * 60.00033 * 10 9 8 12 12 C 1.46900 * 110.99927 * 85.00129 * 11 10 9 13 13 C 1.50697 * 109.47124 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00386 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99776 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47025 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47147 * 120.00127 * 17 15 13 20 20 H 1.48498 * 109.47068 * 240.00309 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 10 9 23 23 H 1.09005 * 109.47281 * 59.99926 * 1 2 3 24 24 H 1.09001 * 109.47863 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47124 * 300.00315 * 1 2 3 26 26 H 1.09007 * 109.47124 * 239.99685 * 2 1 3 27 27 H 1.09005 * 109.46821 * 120.00339 * 2 1 3 28 28 H 1.09008 * 109.46812 * 60.00285 * 6 4 3 29 29 H 1.09000 * 109.47041 * 300.00675 * 6 4 3 30 30 H 1.08992 * 109.47514 * 305.00536 * 7 6 4 31 31 H 1.09002 * 109.47398 * 300.00496 * 8 7 6 32 32 H 1.09001 * 109.47194 * 60.00677 * 8 7 6 33 33 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 35 35 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 36 36 H 1.00900 * 110.99964 * 321.04960 * 11 10 9 37 37 H 1.09001 * 109.46806 * 300.00099 * 12 11 10 38 38 H 1.09003 * 109.47178 * 60.00051 * 12 11 10 39 39 H 0.96995 * 120.00260 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46935 * 299.99411 * 21 10 9 41 41 H 1.09001 * 109.46812 * 179.97438 * 21 10 9 42 42 H 1.08993 * 109.47194 * 179.97438 * 22 21 10 43 43 H 1.09002 * 109.46695 * 59.99734 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5864 0.0005 6 6 3.9208 2.9372 0.0000 7 6 5.4487 2.8570 0.0014 8 6 6.0332 4.2655 0.1266 9 6 7.5610 4.1854 0.1274 10 6 8.0391 3.5492 -1.1793 11 7 7.5922 4.3675 -2.3146 12 6 8.5347 5.4634 -2.5768 13 6 8.0445 6.2786 -3.7456 14 1 7.1245 6.0099 -4.2435 15 6 8.7699 7.3683 -4.1786 16 7 9.8898 7.6959 -3.5720 17 14 8.1618 8.3794 -5.6269 18 1 6.8867 7.8074 -6.1293 19 1 7.9376 9.7815 -5.1924 20 1 9.1773 8.3531 -6.7101 21 6 7.4546 2.1407 -1.3046 22 6 5.9267 2.2208 -1.3054 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.5845 3.4699 0.8896 29 1 3.5853 3.4689 -0.8904 30 1 5.7800 2.2500 0.8438 31 1 5.7019 4.8726 -0.7159 32 1 5.6923 4.7189 1.0574 33 1 7.9775 5.1887 0.2170 34 1 7.8926 3.5782 0.9697 35 1 9.1276 3.4917 -1.1786 36 1 6.6600 4.7215 -2.1604 37 1 8.6070 6.0993 -1.6945 38 1 9.5166 5.0506 -2.8086 39 1 10.4003 8.4623 -3.8769 40 1 7.7862 1.5335 -0.4623 41 1 7.7948 1.6877 -2.2358 42 1 5.5103 1.2175 -1.3951 43 1 5.5952 2.8281 -2.1477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258020090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:41 Heat of formation + Delta-G solvation = -117.092107 kcal Electronic energy + Delta-G solvation = -21040.011457 eV Core-core repulsion = 17890.918804 eV Total energy + Delta-G solvation = -3149.092653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71890 -38.88042 -36.78446 -34.48656 -32.71255 -32.00200 -30.66690 -30.28016 -27.35084 -25.60340 -23.55824 -22.42763 -21.78681 -21.68611 -20.33895 -18.57981 -17.67693 -16.80914 -16.53875 -16.24695 -15.36897 -14.82012 -14.48359 -14.25510 -13.96371 -13.72594 -13.41946 -13.30133 -13.11564 -12.48119 -12.26103 -12.05980 -11.87897 -11.82444 -11.68952 -11.57355 -11.42428 -11.21542 -10.88361 -10.76645 -10.65786 -10.60590 -10.51911 -10.07692 -9.90291 -9.74960 -9.58194 -9.07267 -8.45760 -7.16010 -6.00500 -4.02002 2.14451 2.53752 3.32097 3.39433 3.44436 4.45333 4.53005 4.63284 4.69503 4.74483 4.86061 4.97674 5.11563 5.25361 5.35382 5.37365 5.44185 5.46232 5.52097 5.57789 5.65576 5.69825 5.71024 5.89704 5.89791 5.98847 6.12140 6.26315 6.31158 6.43271 6.46920 6.57474 6.66648 6.79186 6.85917 7.34938 7.51047 7.68971 7.83587 8.18964 8.49619 8.70750 9.08471 9.62962 11.10595 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025718 B = 0.003594 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.475822 B = 7788.527769 C = 8399.295184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.462 3.538 5 O -0.502 6.502 6 C -0.111 4.111 7 C -0.073 4.073 8 C -0.113 4.113 9 C -0.146 4.146 10 C 0.084 3.916 11 N -0.683 5.683 12 C 0.193 3.807 13 C -0.512 4.512 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.101 4.101 22 C -0.118 4.118 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.328 0.672 37 H -0.014 1.014 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.556 -12.509 10.120 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.305 3.695 5 O -0.390 6.390 6 C -0.149 4.149 7 C -0.092 4.092 8 C -0.151 4.151 9 C -0.185 4.185 10 C -0.028 4.028 11 N -0.315 5.315 12 C 0.066 3.934 13 C -0.550 4.550 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.139 4.139 22 C -0.155 4.155 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.004 0.996 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.933 -13.109 9.621 22.078 hybrid contribution -0.339 1.116 0.019 1.166 sum -15.273 -11.994 9.640 21.680 Atomic orbital electron populations 1.21806 0.92750 1.02882 1.03532 1.22990 0.95280 0.80498 1.02543 1.86522 1.25097 1.32193 1.84230 1.23945 0.80200 0.93249 0.72121 1.90649 1.60102 1.43321 1.44888 1.21589 0.97114 0.90376 1.05786 1.21036 0.90511 0.97456 1.00156 1.21551 0.96185 0.95520 1.01821 1.22152 0.95234 1.01635 0.99530 1.21517 0.98881 0.93448 0.88904 1.60809 1.06251 1.26447 1.37946 1.19568 0.91791 0.86935 0.95065 1.21248 1.08407 1.10642 1.14743 0.92044 1.24989 0.94997 0.97492 0.97136 1.69970 1.14943 1.27706 1.41183 0.86462 0.78854 0.79799 0.82415 1.19670 1.21153 1.21039 1.21465 0.94992 0.96370 1.01045 1.21655 0.96583 1.01112 0.96171 0.91411 0.90343 0.91546 0.91231 0.91387 0.87919 0.87406 0.90684 0.91163 0.92252 0.91675 0.92455 0.91324 0.85282 0.99628 0.95654 0.93038 0.92962 0.91701 0.91322 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.15 0.38 -0.55 16 2 C 0.06 0.53 6.18 37.15 0.23 0.76 16 3 O -0.36 -3.97 10.22 -39.24 -0.40 -4.37 16 4 C 0.46 5.56 7.68 36.01 0.28 5.83 16 5 O -0.50 -7.30 13.72 -18.76 -0.26 -7.56 16 6 C -0.11 -1.16 5.28 -27.88 -0.15 -1.31 16 7 C -0.07 -0.91 1.84 -90.62 -0.17 -1.08 16 8 C -0.11 -1.50 4.95 -26.73 -0.13 -1.64 16 9 C -0.15 -2.27 5.52 -26.73 -0.15 -2.42 16 10 C 0.08 1.49 2.85 -67.71 -0.19 1.30 16 11 N -0.68 -14.54 5.75 -107.99 -0.62 -15.16 16 12 C 0.19 5.07 5.24 -4.98 -0.03 5.04 16 13 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 16 14 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.10 -1.58 5.64 -26.73 -0.15 -1.73 16 22 C -0.12 -1.70 4.70 -26.73 -0.13 -1.83 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 31 H 0.07 1.01 6.26 -51.93 -0.32 0.69 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.13 7.45 -51.93 -0.39 0.74 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.31 7.80 -51.93 -0.41 0.91 16 36 H 0.33 6.64 5.56 -39.29 -0.22 6.42 16 37 H -0.01 -0.39 7.44 -51.93 -0.39 -0.77 16 38 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.03 5.96 -51.93 -0.31 0.72 16 43 H 0.07 1.06 7.21 -51.93 -0.37 0.69 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -31.47 338.14 -8.52 -39.99 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.43 Total: 2.54 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.62 Total: -11.01 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.12 Total: -41.44 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.66 Total: -11.93 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.47 -8.52 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258020090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.103 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds