Wall clock time and date at job start Mon Mar 30 2020 01:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45201 * 109.47507 * 2 1 4 4 C 1.34222 * 116.99923 * 179.97438 * 3 2 1 5 5 O 1.20836 * 120.00175 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00130 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47337 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46886 * 185.00101 * 7 6 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 N 1.46906 * 109.46897 * 60.00033 * 10 9 8 12 12 C 1.46900 * 110.99927 * 85.00129 * 11 10 9 13 13 C 1.50697 * 109.47124 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00386 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99776 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47025 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47147 * 120.00127 * 17 15 13 20 20 H 1.48498 * 109.47068 * 240.00309 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 10 9 23 23 H 1.09005 * 109.47281 * 59.99926 * 1 2 3 24 24 H 1.09001 * 109.47863 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47124 * 300.00315 * 1 2 3 26 26 H 1.09007 * 109.47124 * 239.99685 * 2 1 3 27 27 H 1.09005 * 109.46821 * 120.00339 * 2 1 3 28 28 H 1.09008 * 109.46812 * 60.00285 * 6 4 3 29 29 H 1.09000 * 109.47041 * 300.00675 * 6 4 3 30 30 H 1.08992 * 109.47514 * 305.00536 * 7 6 4 31 31 H 1.09002 * 109.47398 * 300.00496 * 8 7 6 32 32 H 1.09001 * 109.47194 * 60.00677 * 8 7 6 33 33 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 35 35 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 36 36 H 1.00900 * 110.99964 * 321.04960 * 11 10 9 37 37 H 1.09001 * 109.46806 * 300.00099 * 12 11 10 38 38 H 1.09003 * 109.47178 * 60.00051 * 12 11 10 39 39 H 0.96995 * 120.00260 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46935 * 299.99411 * 21 10 9 41 41 H 1.09001 * 109.46812 * 179.97438 * 21 10 9 42 42 H 1.08993 * 109.47194 * 179.97438 * 22 21 10 43 43 H 1.09002 * 109.46695 * 59.99734 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5864 0.0005 6 6 3.9208 2.9372 0.0000 7 6 5.4487 2.8570 0.0014 8 6 6.0332 4.2655 0.1266 9 6 7.5610 4.1854 0.1274 10 6 8.0391 3.5492 -1.1793 11 7 7.5922 4.3675 -2.3146 12 6 8.5347 5.4634 -2.5768 13 6 8.0445 6.2786 -3.7456 14 1 7.1245 6.0099 -4.2435 15 6 8.7699 7.3683 -4.1786 16 7 9.8898 7.6959 -3.5720 17 14 8.1618 8.3794 -5.6269 18 1 6.8867 7.8074 -6.1293 19 1 7.9376 9.7815 -5.1924 20 1 9.1773 8.3531 -6.7101 21 6 7.4546 2.1407 -1.3046 22 6 5.9267 2.2208 -1.3054 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.5845 3.4699 0.8896 29 1 3.5853 3.4689 -0.8904 30 1 5.7800 2.2500 0.8438 31 1 5.7019 4.8726 -0.7159 32 1 5.6923 4.7189 1.0574 33 1 7.9775 5.1887 0.2170 34 1 7.8926 3.5782 0.9697 35 1 9.1276 3.4917 -1.1786 36 1 6.6600 4.7215 -2.1604 37 1 8.6070 6.0993 -1.6945 38 1 9.5166 5.0506 -2.8086 39 1 10.4003 8.4623 -3.8769 40 1 7.7862 1.5335 -0.4623 41 1 7.7948 1.6877 -2.2358 42 1 5.5103 1.2175 -1.3951 43 1 5.5952 2.8281 -2.1477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258020090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:41 Heat of formation + Delta-G solvation = -135.728309 kcal Electronic energy + Delta-G solvation = -21040.819583 eV Core-core repulsion = 17890.918804 eV Total energy + Delta-G solvation = -3149.900779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65100 -40.13228 -37.74018 -36.08195 -34.54010 -32.80566 -32.05234 -31.54123 -28.78720 -27.35082 -24.33291 -23.94687 -23.42658 -22.77003 -21.34210 -19.90341 -18.65606 -18.49916 -17.63459 -17.21289 -17.02067 -16.39886 -15.74840 -15.48978 -15.19528 -15.05602 -14.73924 -14.37554 -14.06225 -13.70986 -13.60396 -13.50698 -13.18904 -13.04903 -12.81209 -12.75787 -12.66525 -12.52221 -12.45286 -12.28224 -12.00112 -11.88470 -11.62191 -11.49597 -11.35243 -11.17824 -10.99141 -10.77949 -10.64212 -8.96469 -8.20787 -6.31761 1.24292 1.41382 1.42385 1.56174 1.75246 2.41122 3.12404 3.60117 3.70996 3.74514 3.89674 4.00800 4.02837 4.11205 4.26310 4.35162 4.36306 4.44428 4.56081 4.59303 4.68405 4.71685 4.83187 4.87433 4.91315 4.93985 5.02384 5.13387 5.15888 5.21236 5.23097 5.30207 5.35890 5.39562 5.51262 5.56640 5.65364 5.66825 6.07022 6.54454 6.80358 6.80469 6.98107 7.39592 8.90926 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025718 B = 0.003594 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.475822 B = 7788.527769 C = 8399.295184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.463 3.537 5 O -0.533 6.533 6 C -0.107 4.107 7 C -0.064 4.064 8 C -0.107 4.107 9 C -0.142 4.142 10 C 0.080 3.920 11 N -0.681 5.681 12 C 0.211 3.789 13 C -0.533 4.533 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.280 1.280 21 C -0.094 4.094 22 C -0.112 4.112 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.336 0.664 37 H -0.037 1.037 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.828 -12.478 10.449 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.307 3.693 5 O -0.423 6.423 6 C -0.144 4.144 7 C -0.083 4.083 8 C -0.145 4.145 9 C -0.181 4.181 10 C -0.031 4.031 11 N -0.314 5.314 12 C 0.083 3.917 13 C -0.571 4.571 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.796 3.204 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.132 4.132 22 C -0.150 4.150 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.156 0.844 37 H -0.019 1.019 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.236 -13.093 9.963 23.828 hybrid contribution 0.389 1.026 -0.045 1.098 sum -16.847 -12.067 9.918 22.974 Atomic orbital electron populations 1.21820 0.90602 1.04255 1.03687 1.23239 0.96987 0.79517 1.02363 1.86520 1.24456 1.33461 1.83810 1.24214 0.80389 0.93443 0.71209 1.90639 1.60771 1.44366 1.46480 1.21585 0.95274 0.89895 1.07693 1.20903 0.92144 0.96464 0.98785 1.21509 0.94121 0.96090 1.02749 1.22068 0.97143 1.00270 0.98616 1.21594 0.97914 0.94360 0.89217 1.60693 1.05738 1.24674 1.40288 1.19172 0.91261 0.87507 0.93762 1.21595 1.08674 1.11342 1.15472 0.91829 1.25955 0.94993 0.98700 1.00123 1.70100 1.16196 1.28388 1.42882 0.85295 0.78577 0.78072 0.78408 1.18550 1.20207 1.20608 1.21396 0.96051 0.94662 1.01112 1.21587 0.95272 1.00983 0.97130 0.91450 0.88385 0.91135 0.91758 0.91319 0.85021 0.86408 0.90482 0.92326 0.89520 0.94034 0.90353 0.93486 0.84352 1.01931 0.99081 0.92698 0.91254 0.93054 0.91608 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 71.98 0.74 -0.75 16 2 C 0.05 0.84 6.18 71.98 0.45 1.29 16 3 O -0.37 -7.33 10.22 -51.34 -0.52 -7.85 16 4 C 0.46 10.28 7.68 71.24 0.55 10.83 16 5 O -0.53 -14.84 13.72 21.93 0.30 -14.54 16 6 C -0.11 -1.94 5.28 29.85 0.16 -1.79 16 7 C -0.06 -1.47 1.84 -10.79 -0.02 -1.49 16 8 C -0.11 -2.64 4.95 30.59 0.15 -2.49 16 9 C -0.14 -4.34 5.52 30.59 0.17 -4.17 16 10 C 0.08 2.89 2.85 44.92 0.13 3.02 16 11 N -0.68 -29.72 5.75 -495.56 -2.85 -32.57 16 12 C 0.21 11.51 5.24 85.56 0.45 11.96 16 13 C -0.53 -30.76 9.32 25.60 0.24 -30.53 16 14 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 17 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C -0.09 -2.93 5.64 30.60 0.17 -2.75 16 22 C -0.11 -3.14 4.70 30.59 0.14 -2.99 16 23 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 24 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 27 H 0.07 1.09 8.13 -2.38 -0.02 1.07 16 28 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 1.79 7.96 -2.39 -0.02 1.77 16 31 H 0.06 1.60 6.26 -2.39 -0.01 1.59 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.46 7.45 -2.39 -0.02 1.44 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.89 7.80 -2.39 -0.02 1.87 16 36 H 0.34 13.70 5.56 -89.69 -0.50 13.21 16 37 H -0.04 -2.15 7.44 -2.39 -0.02 -2.16 16 38 H -0.01 -0.54 8.06 -2.39 -0.02 -0.56 16 39 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.92 5.96 -2.39 -0.01 1.90 16 43 H 0.06 1.72 7.21 -2.39 -0.02 1.71 16 Total: -1.00 -68.71 338.14 3.50 -65.22 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.48 Total: 19.43 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 3.78 Total: -19.38 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -2.57 Total: -89.52 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.22 Total: -22.39 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.71 3.50 -65.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258020090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.512 kcal (2) G-P(sol) polarization free energy of solvation -68.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds