Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47298 * 2 1 4 4 C 1.34235 * 117.00343 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99835 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00138 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47008 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47232 * 295.00221 * 7 6 4 9 9 C 1.52999 * 109.47232 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47276 * 60.00004 * 9 8 7 11 11 N 1.46501 * 109.47381 * 180.02562 * 10 9 8 12 12 C 1.46496 * 120.00078 * 59.99523 * 11 10 9 13 13 C 1.36937 * 119.99706 * 239.99830 * 11 10 9 14 14 H 1.07997 * 120.00118 * 23.08163 * 13 11 10 15 15 C 1.38815 * 119.99993 * 203.08715 * 13 11 10 16 16 N 1.31611 * 120.00063 * 11.66686 * 15 13 11 17 17 Si 1.86803 * 119.99870 * 191.67205 * 15 13 11 18 18 H 1.48502 * 109.47194 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46752 * 119.99610 * 17 15 13 20 20 H 1.48500 * 109.46688 * 239.99631 * 17 15 13 21 21 C 1.53009 * 109.46809 * 300.00205 * 10 9 8 22 22 C 1.52990 * 109.47036 * 174.99821 * 7 6 4 23 23 H 1.08994 * 109.47507 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46629 * 300.00188 * 1 2 3 25 25 H 1.09000 * 109.47378 * 59.99398 * 1 2 3 26 26 H 1.09002 * 109.47145 * 240.00368 * 2 1 3 27 27 H 1.08997 * 109.47380 * 119.99839 * 2 1 3 28 28 H 1.09003 * 109.46629 * 59.99793 * 6 4 3 29 29 H 1.09003 * 109.46927 * 299.99926 * 6 4 3 30 30 H 1.08998 * 109.46944 * 55.00124 * 7 6 4 31 31 H 1.09008 * 109.47183 * 299.99759 * 8 7 6 32 32 H 1.09001 * 109.47529 * 59.99871 * 8 7 6 33 33 H 1.08998 * 109.46944 * 299.99903 * 9 8 7 34 34 H 1.09008 * 109.47505 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47666 * 59.99785 * 10 9 8 36 36 H 1.09001 * 109.47326 * 93.88671 * 12 11 10 37 37 H 1.09007 * 109.46832 * 213.88367 * 12 11 10 38 38 H 1.08993 * 109.47296 * 333.87917 * 12 11 10 39 39 H 0.96995 * 120.00381 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46421 * 299.99711 * 21 10 9 41 41 H 1.08997 * 109.46792 * 180.02562 * 21 10 9 42 42 H 1.09005 * 109.47503 * 300.00059 * 22 7 6 43 43 H 1.09000 * 109.47456 * 60.00061 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9208 2.9375 0.0000 7 6 5.4487 2.8574 -0.0001 8 6 5.9262 2.2213 1.3068 9 6 7.4541 2.1418 1.3070 10 6 8.0381 3.5504 1.1822 11 7 9.5011 3.4742 1.1817 12 6 10.1945 2.7102 0.1417 13 6 10.2205 4.1172 2.1534 14 1 9.7574 4.3556 3.0995 15 6 11.5449 4.4628 1.9224 16 7 12.0428 4.3853 0.7065 17 14 12.6206 5.0377 3.3373 18 1 11.8285 5.0369 4.5934 19 1 13.7798 4.1209 3.4819 20 1 13.1085 6.4128 3.0610 21 6 7.5605 4.1865 -0.1249 22 6 6.0331 4.2657 -0.1253 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.5852 3.4690 0.8905 29 1 3.5844 3.4701 -0.8895 30 1 5.7806 2.2501 -0.8422 31 1 5.5943 2.8286 2.1490 32 1 5.5098 1.2179 1.3960 33 1 7.7864 1.5348 0.4648 34 1 7.7944 1.6890 2.2384 35 1 7.7058 4.1575 2.0242 36 1 10.4713 3.3766 -0.6753 37 1 11.0929 2.2574 0.5615 38 1 9.5355 1.9279 -0.2348 39 1 12.9683 4.6264 0.5451 40 1 7.8929 3.5794 -0.9670 41 1 7.9770 5.1898 -0.2141 42 1 5.6930 4.7188 -1.0565 43 1 5.7013 4.8730 0.7167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258035285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = -90.763542 kcal Electronic energy + Delta-G solvation = -21235.420664 eV Core-core repulsion = 18087.469703 eV Total energy + Delta-G solvation = -3147.950961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67184 -38.46575 -36.71752 -34.96282 -32.38962 -31.78504 -30.19374 -29.96790 -26.70913 -25.86145 -23.68298 -22.59037 -22.11384 -21.13666 -19.94058 -18.80665 -17.67095 -16.82733 -16.58778 -16.25506 -15.18192 -14.81291 -14.33550 -13.91848 -13.72403 -13.68580 -13.25693 -13.11115 -12.75992 -12.41071 -12.32371 -12.08993 -11.91929 -11.82913 -11.54434 -11.20009 -10.90086 -10.80269 -10.74025 -10.65774 -10.50575 -10.43492 -10.37117 -10.12826 -10.04028 -9.67431 -9.45928 -9.32713 -8.44722 -6.61751 -5.62559 -3.07836 2.17036 2.55436 3.42480 3.49391 3.51566 4.54958 4.56591 4.63900 4.71673 4.81608 4.92549 4.98864 5.21764 5.41217 5.42434 5.46815 5.48008 5.58085 5.60067 5.65680 5.83132 5.87784 5.93311 6.06335 6.10506 6.23972 6.34403 6.45098 6.52520 6.58752 6.64243 6.75898 6.86183 6.95379 7.19707 7.22552 7.52291 7.71766 7.84269 7.90174 8.51273 9.34820 9.99593 10.49498 11.42235 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048519 B = 0.003384 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.959158 B = 8273.099450 C = 8340.463179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.364 6.364 4 C 0.459 3.541 5 O -0.499 6.499 6 C -0.109 4.109 7 C -0.075 4.075 8 C -0.115 4.115 9 C -0.128 4.128 10 C 0.179 3.821 11 N -0.599 5.599 12 C 0.164 3.836 13 C -0.248 4.248 14 H 0.067 0.933 15 C -0.002 4.002 16 N -0.909 5.909 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.129 4.129 22 C -0.109 4.109 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.026 0.974 37 H 0.040 0.960 38 H -0.002 1.002 39 H 0.250 0.750 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.503 -5.129 -2.703 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.386 6.386 6 C -0.147 4.147 7 C -0.093 4.093 8 C -0.153 4.153 9 C -0.167 4.167 10 C 0.071 3.929 11 N -0.320 5.320 12 C 0.019 3.981 13 C -0.378 4.378 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.555 5.555 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.168 4.168 22 C -0.147 4.147 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.017 0.983 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.101 -5.419 -2.746 21.958 hybrid contribution 0.720 0.155 0.621 0.964 sum -20.381 -5.264 -2.124 21.156 Atomic orbital electron populations 1.21801 0.92779 1.02878 1.03456 1.22987 0.95230 0.80544 1.02597 1.86517 1.25174 1.32172 1.84340 1.23992 0.80165 0.93345 0.72285 1.90666 1.60052 1.43299 1.44587 1.21600 0.97337 0.90241 1.05515 1.21057 0.90110 0.97978 1.00171 1.21687 0.97183 1.00761 0.95703 1.22006 0.93248 0.99944 1.01527 1.20351 0.84641 0.92938 0.95012 1.43970 0.99326 1.57452 1.31284 1.20722 0.93651 0.92039 0.91644 1.19283 0.93965 1.31378 0.93198 0.91550 1.25021 0.98617 1.00208 0.96107 1.70077 1.14147 1.52990 1.18285 0.86209 0.80663 0.77946 0.81897 1.20409 1.21758 1.21853 1.22055 0.92682 1.01654 1.00432 1.21564 0.97239 0.94827 1.01058 0.90347 0.91507 0.91536 0.91325 0.91274 0.87760 0.87908 0.90445 0.92799 0.91339 0.92511 0.92458 0.92339 0.95592 0.94128 0.98322 0.93975 0.92696 0.91944 0.92659 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.54 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.98 10.22 -39.27 -0.40 -4.38 16 4 C 0.46 5.64 7.68 36.01 0.28 5.92 16 5 O -0.50 -7.61 13.72 -18.75 -0.26 -7.87 16 6 C -0.11 -1.14 5.29 -27.88 -0.15 -1.29 16 7 C -0.07 -1.00 1.84 -90.63 -0.17 -1.17 16 8 C -0.12 -1.75 4.94 -26.74 -0.13 -1.88 16 9 C -0.13 -2.38 5.19 -26.73 -0.14 -2.52 16 10 C 0.18 3.73 2.59 -67.93 -0.18 3.56 16 11 N -0.60 -15.43 2.81 -173.48 -0.49 -15.92 16 12 C 0.16 4.21 8.00 59.84 0.48 4.69 16 13 C -0.25 -7.00 9.59 -15.06 -0.14 -7.15 16 14 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 15 C 0.00 -0.05 5.12 -17.43 -0.09 -0.14 16 16 N -0.91 -27.18 10.65 55.49 0.59 -26.59 16 17 Si 0.90 22.35 29.57 -169.99 -5.03 17.32 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 C -0.13 -2.38 5.20 -26.75 -0.14 -2.52 16 22 C -0.11 -1.51 5.20 -26.76 -0.14 -1.64 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.15 7.96 -51.93 -0.41 0.73 16 31 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.07 1.08 5.96 -51.93 -0.31 0.77 16 33 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 34 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.06 1.24 7.87 -51.93 -0.41 0.83 16 36 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 37 H 0.04 1.12 7.23 -51.92 -0.38 0.74 16 38 H 0.00 -0.04 6.43 -51.93 -0.33 -0.37 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -31.81 336.41 -8.00 -39.82 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -7.59 Total: -3.54 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 0.09 Total: -3.91 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.10 Total: -42.50 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.66 Total: -12.25 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.81 -8.00 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258035285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.946 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds