Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47298 * 2 1 4 4 C 1.34235 * 117.00343 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99835 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00138 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47008 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47232 * 295.00221 * 7 6 4 9 9 C 1.52999 * 109.47232 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47276 * 60.00004 * 9 8 7 11 11 N 1.46501 * 109.47381 * 180.02562 * 10 9 8 12 12 C 1.46496 * 120.00078 * 59.99523 * 11 10 9 13 13 C 1.36937 * 119.99706 * 239.99830 * 11 10 9 14 14 H 1.07997 * 120.00118 * 23.08163 * 13 11 10 15 15 C 1.38815 * 119.99993 * 203.08715 * 13 11 10 16 16 N 1.31611 * 120.00063 * 11.66686 * 15 13 11 17 17 Si 1.86803 * 119.99870 * 191.67205 * 15 13 11 18 18 H 1.48502 * 109.47194 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46752 * 119.99610 * 17 15 13 20 20 H 1.48500 * 109.46688 * 239.99631 * 17 15 13 21 21 C 1.53009 * 109.46809 * 300.00205 * 10 9 8 22 22 C 1.52990 * 109.47036 * 174.99821 * 7 6 4 23 23 H 1.08994 * 109.47507 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46629 * 300.00188 * 1 2 3 25 25 H 1.09000 * 109.47378 * 59.99398 * 1 2 3 26 26 H 1.09002 * 109.47145 * 240.00368 * 2 1 3 27 27 H 1.08997 * 109.47380 * 119.99839 * 2 1 3 28 28 H 1.09003 * 109.46629 * 59.99793 * 6 4 3 29 29 H 1.09003 * 109.46927 * 299.99926 * 6 4 3 30 30 H 1.08998 * 109.46944 * 55.00124 * 7 6 4 31 31 H 1.09008 * 109.47183 * 299.99759 * 8 7 6 32 32 H 1.09001 * 109.47529 * 59.99871 * 8 7 6 33 33 H 1.08998 * 109.46944 * 299.99903 * 9 8 7 34 34 H 1.09008 * 109.47505 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47666 * 59.99785 * 10 9 8 36 36 H 1.09001 * 109.47326 * 93.88671 * 12 11 10 37 37 H 1.09007 * 109.46832 * 213.88367 * 12 11 10 38 38 H 1.08993 * 109.47296 * 333.87917 * 12 11 10 39 39 H 0.96995 * 120.00381 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46421 * 299.99711 * 21 10 9 41 41 H 1.08997 * 109.46792 * 180.02562 * 21 10 9 42 42 H 1.09005 * 109.47503 * 300.00059 * 22 7 6 43 43 H 1.09000 * 109.47456 * 60.00061 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9208 2.9375 0.0000 7 6 5.4487 2.8574 -0.0001 8 6 5.9262 2.2213 1.3068 9 6 7.4541 2.1418 1.3070 10 6 8.0381 3.5504 1.1822 11 7 9.5011 3.4742 1.1817 12 6 10.1945 2.7102 0.1417 13 6 10.2205 4.1172 2.1534 14 1 9.7574 4.3556 3.0995 15 6 11.5449 4.4628 1.9224 16 7 12.0428 4.3853 0.7065 17 14 12.6206 5.0377 3.3373 18 1 11.8285 5.0369 4.5934 19 1 13.7798 4.1209 3.4819 20 1 13.1085 6.4128 3.0610 21 6 7.5605 4.1865 -0.1249 22 6 6.0331 4.2657 -0.1253 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.5852 3.4690 0.8905 29 1 3.5844 3.4701 -0.8895 30 1 5.7806 2.2501 -0.8422 31 1 5.5943 2.8286 2.1490 32 1 5.5098 1.2179 1.3960 33 1 7.7864 1.5348 0.4648 34 1 7.7944 1.6890 2.2384 35 1 7.7058 4.1575 2.0242 36 1 10.4713 3.3766 -0.6753 37 1 11.0929 2.2574 0.5615 38 1 9.5355 1.9279 -0.2348 39 1 12.9683 4.6264 0.5451 40 1 7.8929 3.5794 -0.9670 41 1 7.9770 5.1898 -0.2141 42 1 5.6930 4.7188 -1.0565 43 1 5.7013 4.8730 0.7167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258035285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = -108.103434 kcal Electronic energy + Delta-G solvation = -21236.172578 eV Core-core repulsion = 18087.469703 eV Total energy + Delta-G solvation = -3148.702875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61271 -39.82259 -37.77010 -36.64252 -33.89313 -32.68272 -31.59283 -31.54470 -28.12320 -27.92449 -24.91051 -23.84850 -23.47452 -22.28459 -21.11445 -20.32149 -18.75690 -18.56013 -17.64208 -17.17454 -17.05584 -16.07039 -15.72965 -15.38839 -14.97630 -14.90346 -14.54738 -14.51190 -13.98795 -13.80614 -13.49134 -13.22948 -13.07843 -12.92015 -12.76873 -12.65744 -12.55690 -12.46196 -12.36335 -12.13413 -12.01056 -11.88994 -11.69949 -11.53975 -11.46514 -11.35580 -10.92954 -10.88168 -10.55850 -8.72311 -7.80077 -5.28014 1.26190 1.45450 1.46430 1.57240 1.76398 2.51638 3.32642 3.58849 3.73477 3.84157 3.95068 4.02663 4.09440 4.14412 4.31244 4.37644 4.47492 4.58352 4.61598 4.63052 4.71184 4.77467 4.85968 4.89689 4.91050 4.94700 5.03166 5.15566 5.19429 5.25614 5.28737 5.35604 5.38679 5.42242 5.56881 5.59761 5.68439 5.70299 5.76988 6.36617 6.82347 7.17930 7.92221 8.37230 9.23498 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048519 B = 0.003384 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.959158 B = 8273.099450 C = 8340.463179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.459 3.541 5 O -0.537 6.537 6 C -0.102 4.102 7 C -0.069 4.069 8 C -0.107 4.107 9 C -0.118 4.118 10 C 0.173 3.827 11 N -0.616 5.616 12 C 0.183 3.817 13 C -0.259 4.259 14 H 0.069 0.931 15 C -0.058 4.058 16 N -0.941 5.941 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.293 1.293 20 H -0.291 1.291 21 C -0.121 4.121 22 C -0.097 4.097 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.001 0.999 37 H 0.011 0.989 38 H 0.023 0.977 39 H 0.246 0.754 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.158 -4.483 -2.170 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.304 3.696 5 O -0.427 6.427 6 C -0.139 4.139 7 C -0.088 4.088 8 C -0.145 4.145 9 C -0.157 4.157 10 C 0.067 3.933 11 N -0.338 5.338 12 C 0.038 3.962 13 C -0.389 4.389 14 H 0.087 0.913 15 C -0.253 4.253 16 N -0.589 5.589 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.218 1.218 21 C -0.161 4.161 22 C -0.135 4.135 23 H 0.115 0.885 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.019 0.981 37 H 0.030 0.970 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.819 -4.769 -2.205 24.392 hybrid contribution 1.490 -0.107 0.453 1.561 sum -22.329 -4.876 -1.752 22.922 Atomic orbital electron populations 1.21811 0.90436 1.04225 1.03776 1.23228 0.97073 0.79632 1.02236 1.86516 1.24384 1.33290 1.83851 1.24361 0.80366 0.93651 0.71174 1.90663 1.60891 1.44618 1.46504 1.21571 0.94532 0.89602 1.08171 1.20923 0.92585 0.97020 0.98283 1.21613 0.94059 1.01214 0.97618 1.21853 0.95978 0.97834 1.00059 1.20585 0.82055 0.94443 0.96267 1.44241 1.01409 1.57394 1.30798 1.20394 0.93108 0.91909 0.90790 1.19623 0.94595 1.30797 0.93917 0.91275 1.25819 0.99959 1.00999 0.98499 1.70245 1.14117 1.54329 1.20187 0.85160 0.78615 0.77043 0.79388 1.19019 1.22007 1.21785 1.21892 0.96436 0.99555 0.98200 1.21477 0.93148 0.95581 1.03307 0.88524 0.91205 0.91129 0.91689 0.91770 0.85272 0.84922 0.92052 0.91216 0.91797 0.93901 0.94014 0.92590 0.98061 0.96986 0.95909 0.94428 0.94035 0.94206 0.89920 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.84 6.19 71.98 0.45 1.28 16 3 O -0.36 -7.08 10.22 -51.46 -0.53 -7.60 16 4 C 0.46 10.23 7.68 71.24 0.55 10.77 16 5 O -0.54 -15.82 13.72 21.97 0.30 -15.51 16 6 C -0.10 -1.73 5.29 29.85 0.16 -1.57 16 7 C -0.07 -1.68 1.84 -10.80 -0.02 -1.70 16 8 C -0.11 -3.07 4.94 30.59 0.15 -2.92 16 9 C -0.12 -4.37 5.19 30.59 0.16 -4.21 16 10 C 0.17 7.21 2.59 44.99 0.12 7.33 16 11 N -0.62 -32.40 2.81 -702.77 -1.98 -34.37 16 12 C 0.18 9.72 8.00 127.77 1.02 10.74 16 13 C -0.26 -14.79 9.59 84.03 0.81 -13.98 16 14 H 0.07 3.82 7.82 -2.91 -0.02 3.80 16 15 C -0.06 -3.39 5.12 84.86 0.43 -2.95 16 16 N -0.94 -57.81 10.65 21.65 0.23 -57.58 16 17 Si 0.97 46.49 29.57 68.60 2.03 48.52 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 C -0.12 -4.42 5.20 30.58 0.16 -4.26 16 22 C -0.10 -2.40 5.20 30.57 0.16 -2.24 16 23 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 26 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 27 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.13 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.71 7.96 -2.39 -0.02 1.69 16 31 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.06 1.94 5.96 -2.39 -0.01 1.93 16 33 H 0.04 1.68 6.66 -2.39 -0.02 1.66 16 34 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 2.34 7.87 -2.39 -0.02 2.33 16 36 H 0.00 0.06 7.42 -2.39 -0.02 0.05 16 37 H 0.01 0.66 7.23 -2.38 -0.02 0.65 16 38 H 0.02 1.06 6.43 -2.39 -0.02 1.05 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.04 1.60 7.67 -2.39 -0.02 1.58 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -70.58 336.41 5.89 -64.69 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.96 Total: 6.25 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 4.88 Total: -4.38 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -1.74 Total: -91.95 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.22 Total: -23.12 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.58 5.89 -64.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258035285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.418 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds