Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.46889 * 2 1 4 4 C 1.34233 * 116.99653 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00073 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99815 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.47267 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46943 * 180.02562 * 7 6 4 9 9 C 1.53007 * 109.46573 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46995 * 55.00123 * 9 8 7 11 11 C 1.53003 * 109.46661 * 174.99683 * 9 8 7 12 12 N 1.46897 * 109.47250 * 294.99789 * 9 8 7 13 13 C 1.47477 * 111.00478 * 273.19914 * 12 9 8 14 14 C 1.53507 * 87.93400 * 221.29643 * 13 12 9 15 15 C 1.50700 * 114.16759 * 139.66813 * 14 13 12 16 16 H 1.08003 * 120.00317 * 266.15878 * 15 14 13 17 17 C 1.37881 * 120.00083 * 86.16047 * 15 14 13 18 18 N 1.31516 * 120.00106 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99710 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46870 * 89.99944 * 19 17 15 21 21 H 1.48500 * 109.46974 * 209.99817 * 19 17 15 22 22 H 1.48504 * 109.46892 * 329.99708 * 19 17 15 23 23 C 1.47481 * 110.99838 * 177.22525 * 12 9 8 24 24 H 1.08994 * 109.47449 * 59.99334 * 1 2 3 25 25 H 1.08998 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47023 * 299.99679 * 1 2 3 27 27 H 1.09002 * 109.46499 * 240.00342 * 2 1 3 28 28 H 1.08994 * 109.47449 * 120.00666 * 2 1 3 29 29 H 1.09002 * 109.47316 * 60.00083 * 6 4 3 30 30 H 1.08998 * 109.47414 * 300.00292 * 6 4 3 31 31 H 1.09002 * 109.46730 * 59.99914 * 7 6 4 32 32 H 1.09004 * 109.47017 * 300.00280 * 7 6 4 33 33 H 1.08997 * 109.47187 * 60.00546 * 8 7 6 34 34 H 1.08999 * 109.46994 * 299.99708 * 8 7 6 35 35 H 1.09006 * 109.47102 * 50.12693 * 11 9 8 36 36 H 1.09003 * 109.46783 * 170.11587 * 11 9 8 37 37 H 1.08994 * 109.47496 * 290.11682 * 11 9 8 38 38 H 1.09008 * 113.47107 * 336.06543 * 13 12 9 39 39 H 1.08997 * 113.47329 * 106.52491 * 13 12 9 40 40 H 1.08993 * 114.34402 * 272.36240 * 14 13 12 41 41 H 0.96998 * 119.99734 * 180.02562 * 18 17 15 42 42 H 1.08998 * 113.47811 * 253.46866 * 23 12 9 43 43 H 1.08996 * 113.47590 * 23.88168 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4487 2.8574 -0.0001 8 6 6.0334 4.2712 0.0011 9 6 7.5613 4.1911 0.0016 10 1 7.8936 3.5840 -0.8406 11 6 8.1458 5.5996 -0.1230 12 7 8.0192 3.5801 1.2565 13 6 8.1761 4.5970 2.3131 14 6 9.4700 3.8838 2.7301 15 6 10.5966 4.8147 3.0978 16 1 11.3248 5.1018 2.3536 17 6 10.6978 5.3001 4.3844 18 7 11.6812 6.1121 4.7055 19 14 9.4379 4.8042 5.6715 20 1 9.8966 3.5736 6.3647 21 1 9.2827 5.9009 6.6605 22 1 8.1330 4.5438 5.0122 23 6 9.4859 3.4259 1.2649 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.5852 3.4690 0.8905 30 1 3.5843 3.4701 -0.8894 31 1 5.7845 2.3256 -0.8904 32 1 5.7847 2.3248 0.8896 33 1 5.6975 4.8025 0.8916 34 1 5.6974 4.8041 -0.8884 35 1 7.6791 6.2532 0.6140 36 1 9.2210 5.5636 0.0526 37 1 7.9540 5.9854 -1.1242 38 1 8.3399 5.6030 1.9266 39 1 7.3950 4.5584 3.0723 40 1 9.3267 3.0767 3.4484 41 1 11.7526 6.4532 5.6107 42 1 9.8149 2.3948 1.1359 43 1 9.9992 4.1186 0.5980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258117444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = -63.909512 kcal Electronic energy + Delta-G solvation = -20718.928784 eV Core-core repulsion = 17572.142301 eV Total energy + Delta-G solvation = -3146.786483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59297 -39.73788 -36.96720 -35.19251 -32.80420 -32.11231 -31.50924 -27.82369 -27.53897 -25.03736 -24.28328 -23.51232 -22.20178 -20.55439 -19.83808 -18.13087 -17.74757 -17.17154 -16.95309 -16.32019 -15.68908 -14.94244 -14.61414 -14.39867 -13.86192 -13.64982 -13.58595 -13.25215 -13.01230 -12.90770 -12.46546 -12.31822 -11.95045 -11.92558 -11.82806 -11.50039 -11.13858 -11.03142 -10.93208 -10.78830 -10.60311 -10.52563 -10.40647 -10.23631 -9.92968 -9.73945 -9.35065 -9.07853 -8.51923 -7.94782 -6.08437 -4.08144 2.12122 2.50979 3.31488 3.39701 3.45227 4.44394 4.51864 4.60979 4.68962 4.75142 4.79727 4.95673 4.97802 5.19365 5.21511 5.31576 5.38479 5.43680 5.50534 5.58988 5.65337 5.70818 5.81560 5.91297 5.96814 6.00367 6.09176 6.19666 6.29298 6.33575 6.46073 6.55272 6.57307 6.66758 6.69822 6.84465 7.11735 7.42270 7.65429 7.72964 7.95784 8.51615 8.94735 9.55235 11.04145 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.003544 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.441257 B = 7898.179310 C = 8520.745631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.364 6.364 4 C 0.459 3.541 5 O -0.504 6.504 6 C -0.113 4.113 7 C -0.102 4.102 8 C -0.101 4.101 9 C 0.045 3.955 10 H 0.072 0.928 11 C -0.184 4.184 12 N -0.477 5.477 13 C -0.023 4.023 14 C -0.001 4.001 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.901 5.901 19 Si 0.876 3.124 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.257 1.257 23 C 0.004 3.996 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.264 0.736 42 H 0.063 0.937 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 -6.499 -10.904 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.302 3.698 5 O -0.391 6.391 6 C -0.151 4.151 7 C -0.139 4.139 8 C -0.139 4.139 9 C -0.065 4.065 10 H 0.090 0.910 11 C -0.243 4.243 12 N -0.199 5.199 13 C -0.152 4.152 14 C -0.020 4.020 15 C -0.546 4.546 16 H 0.091 0.909 17 C -0.129 4.129 18 N -0.538 5.538 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.181 1.181 23 C -0.124 4.124 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.338 -7.291 -10.698 24.109 hybrid contribution -0.141 0.411 0.522 0.680 sum -20.479 -6.880 -10.176 23.880 Atomic orbital electron populations 1.21803 0.92712 1.02917 1.03486 1.23000 0.95285 0.80482 1.02616 1.86515 1.25100 1.32234 1.84300 1.23998 0.80232 0.93317 0.72217 1.90689 1.60295 1.43301 1.44812 1.21531 0.97896 0.90195 1.05448 1.21377 0.90045 0.98015 1.04504 1.21494 0.94903 0.96038 1.01496 1.22055 0.94739 0.94328 0.95330 0.90972 1.22496 1.02732 0.97949 1.01073 1.69034 1.14417 1.32324 1.04106 1.24597 1.00186 0.96251 0.94172 1.20485 0.93477 0.95648 0.92397 1.20928 1.10219 1.26745 0.96718 0.90909 1.25011 0.95110 0.94442 0.98371 1.69916 1.31297 1.32772 1.19840 0.86874 0.83146 0.78200 0.81495 1.20382 1.21608 1.18126 1.23841 0.88437 1.00160 0.99982 0.91537 0.90303 0.91458 0.91330 0.91227 0.87796 0.88085 0.91633 0.89508 0.91784 0.92225 0.91735 0.91065 0.93124 0.90168 0.92341 0.92877 0.92675 0.91871 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.01 10.22 -39.27 -0.40 -4.41 16 4 C 0.46 5.69 7.96 36.00 0.29 5.98 16 5 O -0.50 -7.88 15.73 -18.75 -0.29 -8.17 16 6 C -0.11 -1.15 5.81 -27.88 -0.16 -1.31 16 7 C -0.10 -1.30 4.39 -26.73 -0.12 -1.41 16 8 C -0.10 -1.28 4.81 -26.73 -0.13 -1.41 16 9 C 0.04 0.69 2.41 -67.71 -0.16 0.52 16 10 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 11 C -0.18 -2.79 7.72 37.16 0.29 -2.51 16 12 N -0.48 -8.90 5.80 -236.59 -1.37 -10.27 16 13 C -0.02 -0.49 6.24 -7.55 -0.05 -0.53 16 14 C 0.00 -0.02 2.96 -91.24 -0.27 -0.29 16 15 C -0.51 -13.97 9.37 -34.44 -0.32 -14.29 16 16 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 19 Si 0.88 21.36 27.14 -169.99 -4.61 16.74 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.26 -5.97 5.68 56.52 0.32 -5.65 16 23 C 0.00 0.09 7.10 -7.54 -0.05 0.04 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.09 1.35 7.71 -51.93 -0.40 0.95 16 33 H 0.06 0.84 8.06 -51.93 -0.42 0.43 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.00 6.51 -51.93 -0.34 0.66 16 36 H 0.07 1.23 5.84 -51.93 -0.30 0.92 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.67 4.78 -51.92 -0.25 1.42 16 39 H 0.06 1.23 7.11 -51.93 -0.37 0.86 16 40 H 0.05 1.28 7.04 -51.93 -0.37 0.92 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.30 5.93 -51.93 -0.31 0.99 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -31.17 340.46 -8.41 -39.58 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.46 Total: 0.84 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.18 Total: -13.03 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.60 Total: -36.69 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.70 Total: -12.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.61 Total: 16.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.17 -8.41 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258117444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.329 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds