Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.46889 * 2 1 4 4 C 1.34233 * 116.99653 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00073 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99815 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.47267 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46943 * 180.02562 * 7 6 4 9 9 C 1.53007 * 109.46573 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46995 * 55.00123 * 9 8 7 11 11 C 1.53003 * 109.46661 * 174.99683 * 9 8 7 12 12 N 1.46897 * 109.47250 * 294.99789 * 9 8 7 13 13 C 1.47477 * 111.00478 * 273.19914 * 12 9 8 14 14 C 1.53507 * 87.93400 * 221.29643 * 13 12 9 15 15 C 1.50700 * 114.16759 * 139.66813 * 14 13 12 16 16 H 1.08003 * 120.00317 * 266.15878 * 15 14 13 17 17 C 1.37881 * 120.00083 * 86.16047 * 15 14 13 18 18 N 1.31516 * 120.00106 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99710 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46870 * 89.99944 * 19 17 15 21 21 H 1.48500 * 109.46974 * 209.99817 * 19 17 15 22 22 H 1.48504 * 109.46892 * 329.99708 * 19 17 15 23 23 C 1.47481 * 110.99838 * 177.22525 * 12 9 8 24 24 H 1.08994 * 109.47449 * 59.99334 * 1 2 3 25 25 H 1.08998 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47023 * 299.99679 * 1 2 3 27 27 H 1.09002 * 109.46499 * 240.00342 * 2 1 3 28 28 H 1.08994 * 109.47449 * 120.00666 * 2 1 3 29 29 H 1.09002 * 109.47316 * 60.00083 * 6 4 3 30 30 H 1.08998 * 109.47414 * 300.00292 * 6 4 3 31 31 H 1.09002 * 109.46730 * 59.99914 * 7 6 4 32 32 H 1.09004 * 109.47017 * 300.00280 * 7 6 4 33 33 H 1.08997 * 109.47187 * 60.00546 * 8 7 6 34 34 H 1.08999 * 109.46994 * 299.99708 * 8 7 6 35 35 H 1.09006 * 109.47102 * 50.12693 * 11 9 8 36 36 H 1.09003 * 109.46783 * 170.11587 * 11 9 8 37 37 H 1.08994 * 109.47496 * 290.11682 * 11 9 8 38 38 H 1.09008 * 113.47107 * 336.06543 * 13 12 9 39 39 H 1.08997 * 113.47329 * 106.52491 * 13 12 9 40 40 H 1.08993 * 114.34402 * 272.36240 * 14 13 12 41 41 H 0.96998 * 119.99734 * 180.02562 * 18 17 15 42 42 H 1.08998 * 113.47811 * 253.46866 * 23 12 9 43 43 H 1.08996 * 113.47590 * 23.88168 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4487 2.8574 -0.0001 8 6 6.0334 4.2712 0.0011 9 6 7.5613 4.1911 0.0016 10 1 7.8936 3.5840 -0.8406 11 6 8.1458 5.5996 -0.1230 12 7 8.0192 3.5801 1.2565 13 6 8.1761 4.5970 2.3131 14 6 9.4700 3.8838 2.7301 15 6 10.5966 4.8147 3.0978 16 1 11.3248 5.1018 2.3536 17 6 10.6978 5.3001 4.3844 18 7 11.6812 6.1121 4.7055 19 14 9.4379 4.8042 5.6715 20 1 9.8966 3.5736 6.3647 21 1 9.2827 5.9009 6.6605 22 1 8.1330 4.5438 5.0122 23 6 9.4859 3.4259 1.2649 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.5852 3.4690 0.8905 30 1 3.5843 3.4701 -0.8894 31 1 5.7845 2.3256 -0.8904 32 1 5.7847 2.3248 0.8896 33 1 5.6975 4.8025 0.8916 34 1 5.6974 4.8041 -0.8884 35 1 7.6791 6.2532 0.6140 36 1 9.2210 5.5636 0.0526 37 1 7.9540 5.9854 -1.1242 38 1 8.3399 5.6030 1.9266 39 1 7.3950 4.5584 3.0723 40 1 9.3267 3.0767 3.4484 41 1 11.7526 6.4532 5.6107 42 1 9.8149 2.3948 1.1359 43 1 9.9992 4.1186 0.5980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258117444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = -83.887703 kcal Electronic energy + Delta-G solvation = -20719.795103 eV Core-core repulsion = 17572.142301 eV Total energy + Delta-G solvation = -3147.652802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54851 -41.25628 -37.87954 -36.39497 -34.64424 -33.26760 -32.44807 -29.56485 -28.59742 -26.70616 -25.85039 -24.48062 -23.13866 -21.46657 -21.30771 -19.73695 -19.17661 -18.66058 -17.84039 -17.24588 -17.09972 -16.33693 -16.16144 -15.66007 -15.36649 -14.74844 -14.65602 -14.55681 -14.26570 -14.18516 -13.66841 -13.29797 -13.20660 -12.98745 -12.83978 -12.72759 -12.55745 -12.37204 -12.16849 -12.05300 -11.81807 -11.78398 -11.61383 -11.52570 -11.49818 -11.27004 -11.13716 -10.99915 -10.60976 -9.50789 -8.27634 -6.31526 1.19607 1.38083 1.40220 1.53148 1.72183 2.38821 3.06459 3.34134 3.71497 3.74536 3.98398 4.05279 4.08304 4.16231 4.20263 4.27348 4.33394 4.39158 4.47133 4.53607 4.65322 4.69255 4.71652 4.85430 4.87948 4.89592 4.91438 4.95030 5.03496 5.06819 5.14626 5.20369 5.34344 5.35028 5.45642 5.54039 5.58796 5.66632 5.68668 6.32215 6.40741 6.73715 6.75009 7.35012 8.88420 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.003544 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.441257 B = 7898.179310 C = 8520.745631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.363 6.363 4 C 0.459 3.541 5 O -0.545 6.545 6 C -0.106 4.106 7 C -0.096 4.096 8 C -0.093 4.093 9 C 0.040 3.960 10 H 0.079 0.921 11 C -0.179 4.179 12 N -0.471 5.471 13 C -0.010 4.010 14 C -0.017 4.017 15 C -0.508 4.508 16 H 0.034 0.966 17 C 0.015 3.985 18 N -0.949 5.949 19 Si 0.940 3.060 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.237 1.237 23 C 0.011 3.989 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.265 0.735 42 H 0.070 0.930 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.291 -6.594 -11.755 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.280 6.280 4 C 0.304 3.696 5 O -0.435 6.435 6 C -0.143 4.143 7 C -0.134 4.134 8 C -0.131 4.131 9 C -0.069 4.069 10 H 0.097 0.903 11 C -0.237 4.237 12 N -0.194 5.194 13 C -0.139 4.139 14 C -0.037 4.037 15 C -0.546 4.546 16 H 0.052 0.948 17 C -0.182 4.182 18 N -0.589 5.589 19 Si 0.764 3.236 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.160 1.160 23 C -0.118 4.118 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.514 -7.389 -11.571 27.229 hybrid contribution 0.880 0.409 0.677 1.183 sum -22.634 -6.980 -10.895 26.071 Atomic orbital electron populations 1.21815 0.90292 1.04314 1.03795 1.23255 0.97192 0.79563 1.02264 1.86519 1.24341 1.33404 1.83785 1.24466 0.80396 0.93744 0.70974 1.90676 1.61197 1.44749 1.46914 1.21545 0.95840 0.89222 1.07740 1.21235 0.92008 0.97547 1.02603 1.21457 0.92417 0.96199 1.03034 1.22225 0.96861 0.94221 0.93580 0.90279 1.22422 1.00736 0.97832 1.02724 1.69009 1.12895 1.31954 1.05505 1.24347 0.98256 0.96424 0.94896 1.20487 0.93610 0.95340 0.94239 1.21124 1.10555 1.26980 0.95937 0.94802 1.25862 0.97159 0.94461 1.00723 1.70056 1.33639 1.34671 1.20538 0.85839 0.81318 0.77755 0.78639 1.20087 1.21311 1.15997 1.23712 0.89914 1.00427 0.97738 0.90993 0.88391 0.91311 0.91466 0.91937 0.86163 0.84857 0.92277 0.92789 0.91900 0.88945 0.92113 0.93819 0.90205 0.90285 0.92073 0.93270 0.92566 0.91141 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.36 -7.34 10.22 -51.45 -0.53 -7.87 16 4 C 0.46 10.63 7.96 71.24 0.57 11.19 16 5 O -0.55 -16.81 15.73 21.96 0.35 -16.46 16 6 C -0.11 -1.83 5.81 29.85 0.17 -1.66 16 7 C -0.10 -2.22 4.39 30.60 0.13 -2.08 16 8 C -0.09 -2.04 4.81 30.60 0.15 -1.89 16 9 C 0.04 1.13 2.41 44.92 0.11 1.24 16 10 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 11 C -0.18 -5.06 7.72 71.98 0.56 -4.50 16 12 N -0.47 -16.93 5.80 -902.45 -5.23 -22.16 16 13 C -0.01 -0.42 6.24 83.57 0.52 0.10 16 14 C -0.02 -0.81 2.96 -11.20 -0.03 -0.85 16 15 C -0.51 -28.64 9.37 25.60 0.24 -28.40 16 16 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 17 C 0.02 0.88 5.47 84.66 0.46 1.34 16 18 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 19 Si 0.94 44.12 27.14 68.60 1.86 45.98 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.24 -10.23 5.68 99.48 0.57 -9.67 16 23 C 0.01 0.44 7.10 83.58 0.59 1.03 16 24 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 29 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.05 1.61 7.71 -2.38 -0.02 1.59 16 33 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.76 6.51 -2.38 -0.02 1.74 16 36 H 0.04 1.47 5.84 -2.39 -0.01 1.46 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 3.22 4.78 -2.38 -0.01 3.21 16 39 H 0.06 2.44 7.11 -2.39 -0.02 2.42 16 40 H 0.05 2.34 7.04 -2.39 -0.02 2.32 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.06 2.54 5.93 -2.39 -0.01 2.53 16 Total: -1.00 -69.31 340.46 2.23 -67.08 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.83 Total: 15.93 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.66 Total: -23.88 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -4.93 Total: -80.78 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.18 Total: -24.33 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.86 Total: 45.98 kcal Total: -69.31 2.23 -67.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258117444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.812 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds