Wall clock time and date at job start Mon Mar 30 2020 01:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45198 * 109.47072 * 2 1 4 4 C 1.34237 * 116.99991 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99749 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99997 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47055 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.47127 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47192 * 305.00392 * 9 8 7 11 11 C 1.53001 * 109.47049 * 185.00237 * 9 8 7 12 12 N 1.46905 * 109.46980 * 65.00539 * 9 8 7 13 13 C 1.47491 * 110.99498 * 275.96783 * 12 9 8 14 14 C 1.53515 * 87.93033 * 221.29671 * 13 12 9 15 15 C 1.50698 * 114.16829 * 139.67229 * 14 13 12 16 16 H 1.07999 * 120.00277 * 266.15973 * 15 14 13 17 17 C 1.37877 * 119.99786 * 86.16145 * 15 14 13 18 18 N 1.31516 * 120.00153 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99848 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47038 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46970 * 119.99997 * 19 17 15 22 22 H 1.48496 * 109.47028 * 240.00083 * 19 17 15 23 23 C 1.47480 * 110.99975 * 180.02562 * 12 9 8 24 24 H 1.09003 * 109.47381 * 59.99912 * 1 2 3 25 25 H 1.09006 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47398 * 300.00054 * 1 2 3 27 27 H 1.09003 * 109.47398 * 239.99946 * 2 1 3 28 28 H 1.09003 * 109.47381 * 120.00087 * 2 1 3 29 29 H 1.09001 * 109.47324 * 59.99401 * 6 4 3 30 30 H 1.09004 * 109.47043 * 299.99769 * 6 4 3 31 31 H 1.09001 * 109.46832 * 59.99966 * 7 6 4 32 32 H 1.08993 * 109.47194 * 299.99487 * 7 6 4 33 33 H 1.09001 * 109.46801 * 300.00272 * 8 7 6 34 34 H 1.09001 * 109.46998 * 59.99868 * 8 7 6 35 35 H 1.08998 * 109.47250 * 300.00119 * 11 9 8 36 36 H 1.08998 * 109.47252 * 60.00195 * 11 9 8 37 37 H 1.09000 * 109.46959 * 180.02562 * 11 9 8 38 38 H 1.08997 * 113.47504 * 336.06343 * 13 12 9 39 39 H 1.09000 * 113.46764 * 106.53068 * 13 12 9 40 40 H 1.08996 * 114.16900 * 272.38262 * 14 13 12 41 41 H 0.96995 * 119.99682 * 179.97438 * 18 17 15 42 42 H 1.09002 * 113.47031 * 253.47135 * 23 12 9 43 43 H 1.09005 * 113.47568 * 23.86746 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 6 6.0334 4.2712 -0.0002 9 6 7.5613 4.1911 -0.0010 10 1 7.8937 3.5833 0.8405 11 6 8.1458 5.5994 0.1247 12 7 8.0190 3.5812 -1.2566 13 6 7.9831 2.1091 -1.1730 14 6 9.3306 2.0900 -1.9082 15 6 10.3061 1.0690 -1.3821 16 1 11.0341 1.3519 -0.6362 17 6 10.2692 -0.2263 -1.8530 18 7 9.3824 -0.5709 -2.7610 19 14 11.4789 -1.4918 -1.2014 20 1 12.3665 -0.8557 -0.1950 21 1 10.7333 -2.6093 -0.5687 22 1 12.2989 -2.0161 -2.3229 23 6 9.4903 3.4869 -1.2928 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.5851 3.4691 0.8904 30 1 3.5843 3.4700 -0.8896 31 1 5.7844 2.3255 -0.8904 32 1 5.7846 2.3249 0.8896 33 1 5.6973 4.8033 -0.8902 34 1 5.6975 4.8033 0.8898 35 1 7.8134 6.2073 -0.7168 36 1 7.8062 6.0520 1.0563 37 1 9.2343 5.5424 0.1237 38 1 8.0399 1.7307 -0.1524 39 1 7.1701 1.6616 -1.7447 40 1 9.2460 2.0879 -2.9949 41 1 9.3567 -1.4821 -3.0925 42 1 9.9551 4.2073 -1.9660 43 1 9.9492 3.4771 -0.3041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258117445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:59 Heat of formation + Delta-G solvation = -73.297411 kcal Electronic energy + Delta-G solvation = -20989.831546 eV Core-core repulsion = 17842.637973 eV Total energy + Delta-G solvation = -3147.193572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41444 -39.29833 -36.76379 -35.03459 -32.80641 -32.00440 -31.51954 -27.71826 -27.24541 -24.50027 -24.01085 -23.46944 -22.12347 -20.44214 -19.82485 -18.48286 -17.57550 -16.83167 -16.46724 -16.16931 -15.68788 -14.73701 -14.50580 -14.10710 -13.75736 -13.56846 -13.47781 -13.17972 -12.93158 -12.33409 -12.29211 -12.03788 -11.77612 -11.71250 -11.60239 -11.36667 -11.15090 -11.10600 -10.90218 -10.78876 -10.60236 -10.52447 -10.36228 -10.22313 -10.08788 -9.52017 -9.04521 -8.80561 -8.35385 -7.88554 -5.99134 -4.03081 2.31901 2.67586 3.32091 3.40132 3.43436 4.45324 4.67432 4.76454 4.84724 4.86975 4.92818 5.12066 5.12288 5.24148 5.32364 5.45121 5.47876 5.58116 5.61743 5.70025 5.76524 5.81572 5.94559 6.01298 6.07148 6.21337 6.22682 6.37251 6.45978 6.49903 6.58189 6.61078 6.70279 6.76801 6.88812 7.26541 7.28876 7.79187 7.85173 7.98435 8.18959 8.44688 8.99815 9.61563 11.10548 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.004883 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.455964 B = 5732.371579 C = 7456.244135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.455 3.545 5 O -0.495 6.495 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.100 4.100 9 C 0.043 3.957 10 H 0.043 0.957 11 C -0.142 4.142 12 N -0.479 5.479 13 C 0.009 3.991 14 C 0.038 3.962 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.003 4.003 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.260 0.740 42 H 0.058 0.942 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 7.323 6.517 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.297 3.703 5 O -0.381 6.381 6 C -0.146 4.146 7 C -0.159 4.159 8 C -0.138 4.138 9 C -0.066 4.066 10 H 0.061 0.939 11 C -0.200 4.200 12 N -0.203 5.203 13 C -0.119 4.119 14 C 0.019 3.981 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.131 4.131 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.071 7.232 5.917 17.732 hybrid contribution 0.910 -1.365 1.150 2.003 sum -14.161 5.867 7.066 16.878 Atomic orbital electron populations 1.21795 0.92814 1.02852 1.03343 1.22994 0.95148 0.80559 1.02758 1.86494 1.25158 1.32187 1.84500 1.23985 0.80266 0.93367 0.72662 1.90748 1.60152 1.43137 1.44100 1.21465 0.97662 0.90262 1.05230 1.21757 0.90652 0.98305 1.05180 1.21490 0.94849 0.95968 1.01475 1.22172 0.94804 0.95907 0.93753 0.93903 1.21808 1.00944 0.96290 1.00962 1.68948 1.11081 1.10969 1.29272 1.24076 1.01700 0.86130 1.00017 1.20121 0.91813 0.89538 0.96595 1.21065 1.16865 0.94235 1.23209 0.92511 1.25006 0.95399 0.98506 0.94641 1.69976 1.34606 1.18644 1.28985 0.86592 0.81257 0.81631 0.78866 1.19760 1.21006 1.20949 1.23915 0.88829 1.00706 0.99681 0.91514 0.90355 0.91637 0.91130 0.91339 0.88280 0.87845 0.88819 0.91540 0.91270 0.92419 0.92304 0.93114 0.92628 0.92934 0.91657 0.91963 0.92981 0.92311 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.15 0.38 -0.76 16 2 C 0.06 0.65 6.19 37.15 0.23 0.88 16 3 O -0.37 -4.69 10.22 -39.28 -0.40 -5.09 16 4 C 0.45 6.67 7.96 36.00 0.29 6.95 16 5 O -0.50 -9.28 15.73 -18.75 -0.29 -9.58 16 6 C -0.11 -1.30 5.81 -27.89 -0.16 -1.46 16 7 C -0.12 -1.83 3.73 -26.73 -0.10 -1.93 16 8 C -0.10 -1.38 4.89 -26.73 -0.13 -1.51 16 9 C 0.04 0.71 1.98 -67.71 -0.13 0.58 16 10 H 0.04 0.76 7.52 -51.93 -0.39 0.37 16 11 C -0.14 -2.01 9.09 37.16 0.34 -1.67 16 12 N -0.48 -9.62 6.11 -236.73 -1.45 -11.07 16 13 C 0.01 0.22 5.12 -7.59 -0.04 0.18 16 14 C 0.04 0.98 3.77 -91.26 -0.34 0.64 16 15 C -0.52 -14.38 8.82 -34.44 -0.30 -14.69 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 18 N -0.88 -26.27 13.26 55.43 0.74 -25.53 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.00 -0.05 6.01 -7.62 -0.05 -0.10 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.73 5.05 -51.93 -0.26 1.47 16 32 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.81 7.03 -51.93 -0.37 0.45 16 38 H 0.05 1.27 7.49 -51.93 -0.39 0.88 16 39 H 0.07 1.62 6.80 -51.93 -0.35 1.27 16 40 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.10 7.62 -51.93 -0.40 0.70 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -31.24 346.82 -8.94 -40.18 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.61 Total: 0.34 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.12 Total: -11.09 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.71 Total: -36.60 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.70 Total: -14.67 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.24 -8.94 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258117445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.118 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds