Wall clock time and date at job start Mon Mar 30 2020 00:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34233 * 117.00181 * 2 1 4 4 O 1.20819 * 119.99748 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00083 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47333 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47126 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47294 * 304.99486 * 7 6 5 9 9 C 1.53008 * 109.46828 * 184.99980 * 7 6 5 10 10 N 1.46898 * 109.47644 * 64.99962 * 7 6 5 11 11 C 1.46898 * 111.00176 * 225.33960 * 10 7 6 12 12 H 1.08996 * 109.41401 * 30.49059 * 11 10 7 13 13 C 1.52958 * 109.41230 * 150.35345 * 11 10 7 14 14 C 1.53233 * 109.40089 * 183.70113 * 13 11 10 15 15 C 1.51265 * 108.53720 * 305.37111 * 14 13 11 16 16 C 1.37874 * 120.85079 * 231.36594 * 15 14 13 17 17 N 1.31520 * 119.99856 * 357.94367 * 16 15 14 18 18 Si 1.86801 * 120.00192 * 177.93433 * 16 15 14 19 19 H 1.48495 * 109.46933 * 354.78198 * 18 16 15 20 20 H 1.48498 * 109.46768 * 114.78145 * 18 16 15 21 21 H 1.48502 * 109.47214 * 234.78012 * 18 16 15 22 22 C 1.51269 * 118.30061 * 51.34801 * 15 14 13 23 23 C 1.52966 * 109.41154 * 270.63452 * 11 10 7 24 24 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47053 * 59.99835 * 1 2 3 26 26 H 1.09001 * 109.47338 * 300.00320 * 1 2 3 27 27 H 1.09000 * 109.47387 * 299.99986 * 5 3 2 28 28 H 1.09001 * 109.47234 * 59.99492 * 5 3 2 29 29 H 1.09000 * 109.46950 * 300.00348 * 6 5 3 30 30 H 1.09001 * 109.46792 * 59.99480 * 6 5 3 31 31 H 1.08997 * 109.46975 * 297.94007 * 9 7 6 32 32 H 1.08996 * 109.47279 * 57.94055 * 9 7 6 33 33 H 1.08998 * 109.47100 * 177.94135 * 9 7 6 34 34 H 1.00900 * 110.99861 * 101.38167 * 10 7 6 35 35 H 1.09002 * 109.48616 * 303.67898 * 13 11 10 36 36 H 1.08998 * 109.48264 * 63.71336 * 13 11 10 37 37 H 1.09000 * 109.62157 * 65.09149 * 14 13 11 38 38 H 1.09007 * 109.62357 * 185.65818 * 14 13 11 39 39 H 0.97001 * 119.99863 * 179.97438 * 17 16 15 40 40 H 1.09001 * 109.62552 * 68.36566 * 22 15 14 41 41 H 1.08996 * 109.62407 * 188.74253 * 22 15 14 42 42 H 1.08995 * 109.47854 * 296.27595 * 23 11 10 43 43 H 1.08995 * 109.48185 * 56.31289 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 -0.0002 7 6 5.5280 2.8220 -0.0002 8 1 5.9217 2.2529 0.8419 9 6 5.9621 4.2839 0.1247 10 7 6.0477 2.2625 -1.2551 11 6 7.1807 1.3626 -1.0010 12 1 7.0575 0.8915 -0.0258 13 6 7.2263 0.2841 -2.0846 14 6 8.3508 -0.7077 -1.7686 15 6 9.6408 0.0646 -1.6031 16 6 10.7762 -0.2988 -2.2958 17 7 10.7577 -1.3528 -3.0821 18 14 12.3407 0.7062 -2.1177 19 1 12.0677 1.9033 -1.2825 20 1 13.3894 -0.1213 -1.4690 21 1 12.8088 1.1355 -3.4600 22 6 9.6533 1.2460 -0.6584 23 6 8.4819 2.1666 -1.0164 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 3.9557 0.7809 0.8908 28 1 3.9564 0.7805 -0.8891 29 1 3.6108 3.2356 -0.8906 30 1 3.6100 3.2367 0.8893 31 1 5.5994 4.8455 -0.7361 32 1 5.5462 4.7097 1.0378 33 1 7.0502 4.3380 0.1615 34 1 6.3055 2.9957 -1.8985 35 1 6.2731 -0.2438 -2.1126 36 1 7.4129 0.7491 -3.0526 37 1 8.1211 -1.2393 -0.8451 38 1 8.4525 -1.4191 -2.5882 39 1 11.5563 -1.6082 -3.5698 40 1 9.5443 0.8952 0.3679 41 1 10.5933 1.7878 -0.7622 42 1 8.6383 2.5860 -2.0102 43 1 8.4191 2.9739 -0.2868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258351827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:27 Heat of formation + Delta-G solvation = -112.571904 kcal Electronic energy + Delta-G solvation = -21219.624472 eV Core-core repulsion = 18070.727829 eV Total energy + Delta-G solvation = -3148.896642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47487 -38.24700 -36.65128 -35.57089 -32.78402 -31.35331 -29.84306 -29.21666 -27.85517 -26.20400 -24.57981 -21.79533 -21.24900 -20.94522 -20.41478 -19.12078 -17.54845 -16.69980 -16.48205 -16.18577 -15.41318 -14.70154 -14.36054 -13.96481 -13.86546 -13.44475 -13.07121 -12.90872 -12.70454 -12.59848 -12.34385 -12.16165 -12.09675 -11.87427 -11.44318 -11.35124 -11.02711 -10.91510 -10.83106 -10.78430 -10.70552 -10.45028 -10.30522 -10.09600 -9.78407 -9.34977 -8.82921 -8.67545 -8.44486 -7.79064 -6.06661 -3.97142 2.20820 2.70961 3.26055 3.34201 3.36217 4.39457 4.53922 4.75373 4.84998 4.95073 5.01041 5.18746 5.22854 5.26273 5.36124 5.40016 5.58457 5.68899 5.75514 5.80639 5.93498 6.04450 6.12273 6.20266 6.26320 6.30737 6.39886 6.52487 6.76535 6.85676 6.89873 6.96144 7.13515 7.23837 7.43025 7.62792 7.69618 7.73167 7.76129 7.90845 7.94823 8.44234 9.01836 9.57887 11.02617 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.004032 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.845119 B = 6943.509802 C = 7745.757317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.461 3.539 4 O -0.516 6.516 5 C -0.108 4.108 6 C -0.090 4.090 7 C 0.081 3.919 8 H 0.071 0.929 9 C -0.174 4.174 10 N -0.687 5.687 11 C 0.099 3.901 12 H 0.063 0.937 13 C -0.093 4.093 14 C 0.008 3.992 15 C -0.483 4.483 16 C 0.074 3.926 17 N -0.891 5.891 18 Si 0.877 3.123 19 H -0.255 1.255 20 H -0.284 1.284 21 H -0.286 1.286 22 C -0.026 4.026 23 C -0.132 4.132 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.338 0.662 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.002 0.998 38 H 0.055 0.945 39 H 0.262 0.738 40 H 0.013 0.987 41 H 0.040 0.960 42 H 0.051 0.949 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.247 6.080 6.230 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.405 6.405 5 C -0.145 4.145 6 C -0.129 4.129 7 C -0.029 4.029 8 H 0.089 0.911 9 C -0.233 4.233 10 N -0.317 5.317 11 C -0.009 4.009 12 H 0.081 0.919 13 C -0.131 4.131 14 C -0.030 4.030 15 C -0.502 4.502 16 C -0.128 4.128 17 N -0.529 5.529 18 Si 0.706 3.294 19 H -0.180 1.180 20 H -0.210 1.210 21 H -0.213 1.213 22 C -0.064 4.064 23 C -0.172 4.172 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.139 0.861 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.845 5.741 6.076 17.037 hybrid contribution 1.382 1.192 0.197 1.836 sum -13.462 6.933 6.273 16.391 Atomic orbital electron populations 1.23218 0.76876 1.03492 1.02299 1.86555 1.23086 1.33963 1.84156 1.24231 0.92745 0.80971 0.71514 1.90634 1.67540 1.36431 1.45850 1.21408 0.85714 1.00760 1.06635 1.21435 0.95263 0.93494 1.02671 1.21619 0.93952 0.94060 0.93314 0.91085 1.22438 1.01736 0.97138 1.01971 1.60818 1.36575 1.22764 1.11558 1.21632 0.87039 0.93028 0.99216 0.91865 1.21584 0.98097 0.96419 0.97038 1.19396 0.91748 0.94619 0.97197 1.20070 0.95564 1.11250 1.23339 1.24857 0.98159 0.94975 0.94842 1.69860 1.28940 1.25249 1.28842 0.86794 0.83496 0.81256 0.77837 1.18042 1.21025 1.21271 1.19961 0.94634 0.95138 0.96648 1.22257 0.97903 0.97487 0.99505 0.88266 0.92038 0.92161 0.88251 0.86051 0.91051 0.91746 0.92382 0.92509 0.92163 0.84370 0.94656 0.93503 0.98009 0.92594 0.92764 0.96866 0.94183 0.93042 0.95345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.35 10.56 -39.27 -0.41 -4.77 16 3 C 0.46 5.98 7.96 36.01 0.29 6.27 16 4 O -0.52 -7.81 15.73 -18.74 -0.29 -8.10 16 5 C -0.11 -1.27 5.70 -27.88 -0.16 -1.43 16 6 C -0.09 -1.07 4.18 -26.73 -0.11 -1.18 16 7 C 0.08 1.01 2.72 -67.71 -0.18 0.82 16 8 H 0.07 0.92 7.10 -51.93 -0.37 0.56 16 9 C -0.17 -1.97 9.08 37.16 0.34 -1.63 16 10 N -0.69 -10.03 5.59 -99.78 -0.56 -10.58 16 11 C 0.10 1.78 2.35 -67.75 -0.16 1.62 16 12 H 0.06 1.16 7.24 -51.93 -0.38 0.79 16 13 C -0.09 -1.92 5.54 -26.63 -0.15 -2.07 16 14 C 0.01 0.20 5.96 -27.49 -0.16 0.04 16 15 C -0.48 -12.52 5.51 -98.93 -0.55 -13.07 16 16 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 17 N -0.89 -25.64 12.74 55.43 0.71 -24.93 16 18 Si 0.88 20.65 28.03 -169.99 -4.76 15.89 16 19 H -0.26 -5.71 5.41 56.52 0.31 -5.40 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.03 -0.59 5.61 -27.49 -0.15 -0.74 16 23 C -0.13 -2.54 5.19 -26.63 -0.14 -2.68 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.12 1.55 7.75 -51.93 -0.40 1.15 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.06 0.63 8.11 -51.93 -0.42 0.20 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 34 H 0.34 4.86 7.86 -39.29 -0.31 4.55 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 38 H 0.06 1.52 7.09 -51.92 -0.37 1.15 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.04 0.92 4.27 -51.93 -0.22 0.70 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.03 0.49 6.57 -51.93 -0.34 0.14 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -29.05 336.57 -7.87 -36.92 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.45 Total: 1.25 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.17 Total: -10.76 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.15 Total: -35.51 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.71 Total: -12.87 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.76 Total: 15.89 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.05 -7.87 -36.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258351827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.648 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds