Wall clock time and date at job start Mon Mar 30 2020 00:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34233 * 117.00181 * 2 1 4 4 O 1.20819 * 119.99748 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00083 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47333 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47126 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47294 * 304.99486 * 7 6 5 9 9 C 1.53008 * 109.46828 * 184.99980 * 7 6 5 10 10 N 1.46898 * 109.47644 * 64.99962 * 7 6 5 11 11 C 1.46898 * 111.00176 * 225.33960 * 10 7 6 12 12 H 1.08996 * 109.41401 * 30.49059 * 11 10 7 13 13 C 1.52958 * 109.41230 * 150.35345 * 11 10 7 14 14 C 1.53233 * 109.40089 * 183.70113 * 13 11 10 15 15 C 1.51265 * 108.53720 * 305.37111 * 14 13 11 16 16 C 1.37874 * 120.85079 * 231.36594 * 15 14 13 17 17 N 1.31520 * 119.99856 * 357.94367 * 16 15 14 18 18 Si 1.86801 * 120.00192 * 177.93433 * 16 15 14 19 19 H 1.48495 * 109.46933 * 354.78198 * 18 16 15 20 20 H 1.48498 * 109.46768 * 114.78145 * 18 16 15 21 21 H 1.48502 * 109.47214 * 234.78012 * 18 16 15 22 22 C 1.51269 * 118.30061 * 51.34801 * 15 14 13 23 23 C 1.52966 * 109.41154 * 270.63452 * 11 10 7 24 24 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47053 * 59.99835 * 1 2 3 26 26 H 1.09001 * 109.47338 * 300.00320 * 1 2 3 27 27 H 1.09000 * 109.47387 * 299.99986 * 5 3 2 28 28 H 1.09001 * 109.47234 * 59.99492 * 5 3 2 29 29 H 1.09000 * 109.46950 * 300.00348 * 6 5 3 30 30 H 1.09001 * 109.46792 * 59.99480 * 6 5 3 31 31 H 1.08997 * 109.46975 * 297.94007 * 9 7 6 32 32 H 1.08996 * 109.47279 * 57.94055 * 9 7 6 33 33 H 1.08998 * 109.47100 * 177.94135 * 9 7 6 34 34 H 1.00900 * 110.99861 * 101.38167 * 10 7 6 35 35 H 1.09002 * 109.48616 * 303.67898 * 13 11 10 36 36 H 1.08998 * 109.48264 * 63.71336 * 13 11 10 37 37 H 1.09000 * 109.62157 * 65.09149 * 14 13 11 38 38 H 1.09007 * 109.62357 * 185.65818 * 14 13 11 39 39 H 0.97001 * 119.99863 * 179.97438 * 17 16 15 40 40 H 1.09001 * 109.62552 * 68.36566 * 22 15 14 41 41 H 1.08996 * 109.62407 * 188.74253 * 22 15 14 42 42 H 1.08995 * 109.47854 * 296.27595 * 23 11 10 43 43 H 1.08995 * 109.48185 * 56.31289 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 -0.0002 7 6 5.5280 2.8220 -0.0002 8 1 5.9217 2.2529 0.8419 9 6 5.9621 4.2839 0.1247 10 7 6.0477 2.2625 -1.2551 11 6 7.1807 1.3626 -1.0010 12 1 7.0575 0.8915 -0.0258 13 6 7.2263 0.2841 -2.0846 14 6 8.3508 -0.7077 -1.7686 15 6 9.6408 0.0646 -1.6031 16 6 10.7762 -0.2988 -2.2958 17 7 10.7577 -1.3528 -3.0821 18 14 12.3407 0.7062 -2.1177 19 1 12.0677 1.9033 -1.2825 20 1 13.3894 -0.1213 -1.4690 21 1 12.8088 1.1355 -3.4600 22 6 9.6533 1.2460 -0.6584 23 6 8.4819 2.1666 -1.0164 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 3.9557 0.7809 0.8908 28 1 3.9564 0.7805 -0.8891 29 1 3.6108 3.2356 -0.8906 30 1 3.6100 3.2367 0.8893 31 1 5.5994 4.8455 -0.7361 32 1 5.5462 4.7097 1.0378 33 1 7.0502 4.3380 0.1615 34 1 6.3055 2.9957 -1.8985 35 1 6.2731 -0.2438 -2.1126 36 1 7.4129 0.7491 -3.0526 37 1 8.1211 -1.2393 -0.8451 38 1 8.4525 -1.4191 -2.5882 39 1 11.5563 -1.6082 -3.5698 40 1 9.5443 0.8952 0.3679 41 1 10.5933 1.7878 -0.7622 42 1 8.6383 2.5860 -2.0102 43 1 8.4191 2.9739 -0.2868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258351827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:27 Heat of formation + Delta-G solvation = -129.466157 kcal Electronic energy + Delta-G solvation = -21220.357062 eV Core-core repulsion = 18070.727829 eV Total energy + Delta-G solvation = -3149.629232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44979 -39.59901 -37.70071 -36.94688 -34.41547 -32.70661 -31.48572 -30.65843 -28.63152 -27.77761 -25.52414 -23.57252 -22.99678 -21.98188 -21.49228 -20.66352 -18.53488 -18.02076 -17.64452 -17.39647 -16.56147 -16.39090 -15.90923 -15.06112 -14.83204 -14.78375 -14.51710 -14.38691 -14.05102 -13.91999 -13.77365 -13.49436 -13.29058 -12.92383 -12.78155 -12.68812 -12.57471 -12.38474 -12.12692 -11.88072 -11.79068 -11.74919 -11.67359 -11.47754 -11.44938 -11.15114 -10.61531 -10.51980 -10.43229 -9.08241 -8.11442 -6.05312 1.21573 1.39132 1.42828 1.50683 1.85813 2.44102 3.12893 3.39559 3.84370 3.90572 4.17413 4.26766 4.29506 4.33686 4.35362 4.40136 4.51744 4.63033 4.67578 4.72018 4.79151 4.84596 4.93741 5.07464 5.09328 5.15100 5.16599 5.17668 5.30001 5.32249 5.39685 5.43773 5.46652 5.51699 5.66905 5.71448 5.85380 5.93967 6.38575 6.42231 6.69769 6.76792 7.03137 7.52314 8.99230 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.004032 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.845119 B = 6943.509802 C = 7745.757317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.463 3.537 4 O -0.542 6.542 5 C -0.105 4.105 6 C -0.082 4.082 7 C 0.084 3.916 8 H 0.072 0.928 9 C -0.170 4.170 10 N -0.683 5.683 11 C 0.114 3.886 12 H 0.065 0.935 13 C -0.082 4.082 14 C 0.004 3.996 15 C -0.491 4.491 16 C 0.014 3.986 17 N -0.937 5.937 18 Si 0.932 3.068 19 H -0.232 1.232 20 H -0.287 1.287 21 H -0.291 1.291 22 C -0.029 4.029 23 C -0.126 4.126 24 H 0.128 0.872 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.343 0.657 35 H 0.047 0.953 36 H 0.031 0.969 37 H -0.002 1.002 38 H 0.018 0.982 39 H 0.260 0.740 40 H 0.018 0.982 41 H 0.039 0.961 42 H 0.043 0.957 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.082 7.882 7.702 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.309 3.691 4 O -0.432 6.432 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.026 4.026 8 H 0.090 0.910 9 C -0.229 4.229 10 N -0.313 5.313 11 C 0.005 3.995 12 H 0.083 0.917 13 C -0.121 4.121 14 C -0.034 4.034 15 C -0.510 4.510 16 C -0.183 4.183 17 N -0.578 5.578 18 Si 0.759 3.241 19 H -0.156 1.156 20 H -0.213 1.213 21 H -0.217 1.217 22 C -0.067 4.067 23 C -0.165 4.165 24 H 0.146 0.854 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.016 0.984 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.699 7.559 7.568 18.997 hybrid contribution 1.520 0.554 -0.236 1.635 sum -14.179 8.113 7.332 17.906 Atomic orbital electron populations 1.23508 0.75150 1.05496 1.02420 1.86541 1.24886 1.33465 1.83756 1.24405 0.93121 0.80853 0.70750 1.90621 1.68166 1.37214 1.47211 1.21416 0.85108 1.00878 1.06878 1.21343 0.94648 0.93445 1.02600 1.21647 0.94101 0.94874 0.92010 0.90982 1.22383 1.01357 0.96131 1.03004 1.60678 1.34726 1.23024 1.12908 1.21321 0.87723 0.92651 0.97838 0.91709 1.21390 0.96885 0.96466 0.97348 1.19371 0.93481 0.94974 0.95544 1.20723 0.95566 1.11853 1.22905 1.25673 1.01408 0.96046 0.95171 1.70013 1.29628 1.27400 1.30715 0.85913 0.79758 0.80642 0.77772 1.15561 1.21324 1.21724 1.19986 0.96252 0.94509 0.95919 1.22168 0.96845 0.97596 0.99875 0.85411 0.92177 0.91824 0.86797 0.86886 0.91981 0.90939 0.91924 0.91044 0.92707 0.83875 0.93426 0.95017 0.98359 0.96313 0.93129 0.96372 0.94245 0.93769 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.37 -8.37 10.56 -51.45 -0.54 -8.91 16 3 C 0.46 11.35 7.96 71.24 0.57 11.92 16 4 O -0.54 -15.71 15.73 21.98 0.35 -15.36 16 5 C -0.11 -2.28 5.70 29.85 0.17 -2.11 16 6 C -0.08 -1.74 4.18 30.59 0.13 -1.61 16 7 C 0.08 1.82 2.72 44.92 0.12 1.94 16 8 H 0.07 1.61 7.10 -2.39 -0.02 1.60 16 9 C -0.17 -3.24 9.08 71.98 0.65 -2.59 16 10 N -0.68 -18.18 5.59 -469.61 -2.62 -20.80 16 11 C 0.11 3.83 2.35 44.89 0.11 3.93 16 12 H 0.06 2.20 7.24 -2.39 -0.02 2.18 16 13 C -0.08 -3.35 5.54 30.66 0.17 -3.18 16 14 C 0.00 0.22 5.96 30.11 0.18 0.39 16 15 C -0.49 -25.46 5.51 -16.17 -0.09 -25.55 16 16 C 0.01 0.78 5.46 84.65 0.46 1.24 16 17 N -0.94 -55.75 12.74 21.45 0.27 -55.48 16 18 Si 0.93 42.44 28.03 68.60 1.92 44.37 16 19 H -0.23 -9.56 5.41 99.48 0.54 -9.02 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 C -0.03 -1.25 5.61 30.11 0.17 -1.08 16 23 C -0.13 -4.48 5.19 30.66 0.16 -4.32 16 24 H 0.13 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.06 0.97 8.13 -2.39 -0.02 0.96 16 26 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 27 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.11 2.68 7.75 -2.39 -0.02 2.66 16 29 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 31 H 0.06 1.14 8.11 -2.39 -0.02 1.13 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.11 6.57 -2.39 -0.02 1.10 16 34 H 0.34 8.90 7.86 -89.69 -0.70 8.20 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.02 1.04 7.09 -2.38 -0.02 1.03 16 39 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.04 1.70 4.27 -2.39 -0.01 1.69 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.74 6.57 -2.39 -0.02 1.73 16 Total: -1.00 -63.14 336.57 3.48 -59.66 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.11 Total: 15.91 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 3.99 Total: -19.38 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -2.35 Total: -76.28 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.20 Total: -24.27 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.92 Total: 44.37 kcal Total: -63.14 3.48 -59.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258351827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.810 kcal (2) G-P(sol) polarization free energy of solvation -63.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds