Wall clock time and date at job start Mon Mar 30 2020 00:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99801 * 2 1 4 4 O 1.20823 * 119.99971 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99640 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46774 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47093 * 175.13784 * 6 5 3 8 8 H 1.09001 * 109.47081 * 56.99600 * 7 6 5 9 9 C 1.52993 * 109.47456 * 176.99812 * 7 6 5 10 10 N 1.46906 * 109.47150 * 297.00188 * 7 6 5 11 11 C 1.46896 * 110.99839 * 107.52656 * 10 7 6 12 12 H 1.08998 * 109.41598 * 326.28068 * 11 10 7 13 13 C 1.52963 * 109.35673 * 86.10633 * 11 10 7 14 14 C 1.53227 * 109.40660 * 183.66731 * 13 11 10 15 15 C 1.51273 * 108.53195 * 305.36952 * 14 13 11 16 16 C 1.37877 * 120.84672 * 231.36391 * 15 14 13 17 17 N 1.31514 * 119.99952 * 190.42517 * 16 15 14 18 18 Si 1.86801 * 120.00178 * 10.43510 * 16 15 14 19 19 H 1.48492 * 109.46966 * 5.57074 * 18 16 15 20 20 H 1.48507 * 109.47254 * 125.57164 * 18 16 15 21 21 H 1.48499 * 109.47136 * 245.56805 * 18 16 15 22 22 C 1.51294 * 118.30920 * 51.35306 * 15 14 13 23 23 C 1.52960 * 109.41332 * 206.42113 * 11 10 7 24 24 H 1.09002 * 109.47680 * 300.00205 * 1 2 3 25 25 H 1.08998 * 109.47133 * 60.00498 * 1 2 3 26 26 H 1.09001 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47052 * 60.00364 * 5 3 2 28 28 H 1.08993 * 109.47317 * 299.99615 * 5 3 2 29 29 H 1.08998 * 109.46980 * 55.14211 * 6 5 3 30 30 H 1.09004 * 109.47277 * 295.13861 * 6 5 3 31 31 H 1.09003 * 109.46887 * 304.85329 * 9 7 6 32 32 H 1.09003 * 109.46953 * 64.84721 * 9 7 6 33 33 H 1.08993 * 109.47554 * 184.85437 * 9 7 6 34 34 H 1.00897 * 110.99703 * 343.56919 * 10 7 6 35 35 H 1.08997 * 109.47900 * 303.64495 * 13 11 10 36 36 H 1.08998 * 109.48112 * 63.66799 * 13 11 10 37 37 H 1.08993 * 109.62596 * 65.08299 * 14 13 11 38 38 H 1.09002 * 109.62699 * 185.66396 * 14 13 11 39 39 H 0.97003 * 120.00057 * 180.02562 * 17 16 15 40 40 H 1.09000 * 109.64198 * 188.94159 * 22 15 14 41 41 H 1.08998 * 109.62589 * 68.35582 * 22 15 14 42 42 H 1.09003 * 109.48150 * 296.34838 * 23 11 10 43 43 H 1.09002 * 109.48099 * 56.37135 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5229 2.8238 0.1227 8 1 5.9836 2.2631 -0.6907 9 6 5.9630 4.2871 0.0467 10 7 5.9417 2.2526 1.4097 11 6 6.5943 0.9503 1.2203 12 1 6.1346 0.4338 0.3777 13 6 8.0816 1.1653 0.9347 14 6 8.7451 -0.1855 0.6465 15 6 8.4610 -1.1174 1.8037 16 6 9.4829 -1.7988 2.4301 17 7 9.2058 -2.7535 3.2911 18 14 11.2611 -1.3659 2.0559 19 1 11.3045 -0.1783 1.1655 20 1 11.9736 -1.0611 3.3227 21 1 11.9189 -2.5141 1.3821 22 6 7.0269 -1.2824 2.2566 23 6 6.4258 0.1083 2.4861 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9563 0.7806 -0.8892 28 1 3.9557 0.7810 0.8908 29 1 3.5395 3.2576 0.8426 30 1 3.6848 3.2137 -0.9310 31 1 5.5783 4.7351 -0.8695 32 1 5.5724 4.8291 0.9080 33 1 7.0517 4.3396 0.0475 34 1 5.1600 2.1767 2.0431 35 1 8.1949 1.8179 0.0691 36 1 8.5554 1.6257 1.8016 37 1 8.3352 -0.6063 -0.2716 38 1 9.8216 -0.0497 0.5417 39 1 9.9248 -3.2327 3.7320 40 1 6.9993 -1.8512 3.1860 41 1 6.4579 -1.8047 1.4875 42 1 6.9389 0.5935 3.3165 43 1 5.3656 0.0121 2.7202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258351829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:31 Heat of formation + Delta-G solvation = -111.697081 kcal Electronic energy + Delta-G solvation = -21487.143784 eV Core-core repulsion = 18338.285077 eV Total energy + Delta-G solvation = -3148.858707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60658 -38.35032 -36.70799 -35.62198 -32.63259 -31.32423 -30.06612 -29.26049 -27.91660 -26.26937 -24.56848 -21.89287 -21.44361 -20.85606 -20.20337 -19.07458 -17.70251 -16.81316 -16.62780 -16.06110 -15.53242 -14.76439 -14.42815 -14.19557 -13.82702 -13.30748 -13.28987 -12.90343 -12.68043 -12.65293 -12.33359 -12.24943 -12.02214 -11.83990 -11.48180 -11.34311 -11.09732 -10.96324 -10.88667 -10.76756 -10.58349 -10.54499 -10.30520 -10.06294 -9.90677 -9.32223 -8.87375 -8.58299 -8.37002 -7.90644 -6.07738 -3.95826 2.08232 2.59645 3.28953 3.39261 3.39857 4.42152 4.51702 4.57792 4.73367 4.90960 4.92112 4.99809 5.13788 5.21431 5.33553 5.43834 5.51973 5.65247 5.79714 5.83044 5.88975 6.00814 6.02522 6.18990 6.24154 6.27461 6.42893 6.59261 6.73773 6.83423 6.90094 7.01260 7.07899 7.21817 7.51112 7.61395 7.61894 7.71140 7.78914 7.85796 7.91139 8.43035 9.00651 9.58964 11.02016 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.004697 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.187309 B = 5959.259740 C = 6910.700794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.512 6.512 5 C -0.121 4.121 6 C -0.128 4.128 7 C 0.083 3.917 8 H 0.071 0.929 9 C -0.134 4.134 10 N -0.687 5.687 11 C 0.099 3.901 12 H 0.034 0.966 13 C -0.091 4.091 14 C -0.027 4.027 15 C -0.484 4.484 16 C 0.075 3.925 17 N -0.889 5.889 18 Si 0.878 3.122 19 H -0.255 1.255 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.013 3.987 23 C -0.111 4.111 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.333 0.667 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.013 0.987 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.053 0.947 41 H 0.002 0.998 42 H 0.057 0.943 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 8.033 -6.653 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.307 3.693 4 O -0.400 6.400 5 C -0.159 4.159 6 C -0.167 4.167 7 C -0.028 4.028 8 H 0.090 0.910 9 C -0.192 4.192 10 N -0.319 5.319 11 C -0.010 4.010 12 H 0.052 0.948 13 C -0.129 4.129 14 C -0.065 4.065 15 C -0.503 4.503 16 C -0.127 4.127 17 N -0.527 5.527 18 Si 0.706 3.294 19 H -0.180 1.180 20 H -0.213 1.213 21 H -0.211 1.211 22 C -0.024 4.024 23 C -0.149 4.149 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.021 0.979 42 H 0.075 0.925 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.697 8.535 -6.502 15.872 hybrid contribution -0.073 -0.406 -0.272 0.494 sum -11.769 8.128 -6.774 15.826 Atomic orbital electron populations 1.23253 0.76539 1.03699 1.02376 1.86559 1.23328 1.33611 1.83988 1.23943 0.92371 0.81171 0.71801 1.90649 1.67382 1.36369 1.45613 1.21580 0.87062 1.00685 1.06530 1.22104 0.97320 0.93323 1.03934 1.21637 0.91502 0.96747 0.92881 0.91049 1.21740 1.01739 0.95075 1.00635 1.60709 1.32589 1.27636 1.10928 1.21569 0.95494 0.86315 0.97575 0.94786 1.21546 0.94091 0.98246 0.99049 1.19987 0.97031 0.92804 0.96708 1.20033 0.92262 1.23520 1.14504 1.24844 0.98647 0.94279 0.94937 1.69900 1.32499 1.21565 1.28707 0.86766 0.85338 0.79139 0.78154 1.18021 1.21288 1.21079 1.19333 0.94188 0.90817 0.98103 1.21858 0.97233 0.99506 0.96343 0.91934 0.92049 0.88082 0.87498 0.87258 0.90589 0.90812 0.93295 0.92647 0.92175 0.84780 0.95376 0.92694 0.96885 0.94203 0.92768 0.92806 0.97942 0.92458 0.95627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.40 10.57 -39.26 -0.41 -4.81 16 3 C 0.46 5.99 7.96 36.01 0.29 6.28 16 4 O -0.51 -7.62 15.67 -18.75 -0.29 -7.91 16 5 C -0.12 -1.42 5.08 -27.88 -0.14 -1.56 16 6 C -0.13 -1.48 3.86 -26.73 -0.10 -1.58 16 7 C 0.08 1.06 2.57 -67.71 -0.17 0.88 16 8 H 0.07 0.97 7.31 -51.93 -0.38 0.59 16 9 C -0.13 -1.59 9.52 37.15 0.35 -1.23 16 10 N -0.69 -10.36 5.87 -99.78 -0.59 -10.94 16 11 C 0.10 1.78 1.40 -67.75 -0.10 1.69 16 12 H 0.03 0.62 6.85 -51.93 -0.36 0.26 16 13 C -0.09 -1.83 5.46 -26.63 -0.15 -1.98 16 14 C -0.03 -0.63 5.65 -27.48 -0.16 -0.79 16 15 C -0.48 -12.60 5.48 -98.91 -0.54 -13.14 16 16 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 17 N -0.89 -25.57 12.81 55.43 0.71 -24.86 16 18 Si 0.88 20.81 27.95 -169.99 -4.75 16.06 16 19 H -0.26 -5.79 5.56 56.52 0.31 -5.47 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.01 0.33 5.93 -27.47 -0.16 0.17 16 23 C -0.11 -2.25 5.22 -26.63 -0.14 -2.39 16 24 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 25 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.11 1.37 6.37 -51.93 -0.33 1.04 16 29 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.33 4.74 7.13 -39.29 -0.28 4.46 16 35 H 0.03 0.52 7.97 -51.93 -0.41 0.10 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.04 0.93 4.35 -51.93 -0.23 0.70 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.05 1.45 7.18 -51.93 -0.37 1.07 16 41 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -29.30 335.93 -7.81 -37.11 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.48 Total: 0.62 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.05 Total: -10.32 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.12 Total: -35.81 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.71 Total: -12.72 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.75 Total: 16.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.30 -7.81 -37.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258351829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.591 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds