Wall clock time and date at job start Mon Mar 30 2020 00:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99801 * 2 1 4 4 O 1.20823 * 119.99971 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99640 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46774 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47093 * 175.13784 * 6 5 3 8 8 H 1.09001 * 109.47081 * 56.99600 * 7 6 5 9 9 C 1.52993 * 109.47456 * 176.99812 * 7 6 5 10 10 N 1.46906 * 109.47150 * 297.00188 * 7 6 5 11 11 C 1.46896 * 110.99839 * 107.52656 * 10 7 6 12 12 H 1.08998 * 109.41598 * 326.28068 * 11 10 7 13 13 C 1.52963 * 109.35673 * 86.10633 * 11 10 7 14 14 C 1.53227 * 109.40660 * 183.66731 * 13 11 10 15 15 C 1.51273 * 108.53195 * 305.36952 * 14 13 11 16 16 C 1.37877 * 120.84672 * 231.36391 * 15 14 13 17 17 N 1.31514 * 119.99952 * 190.42517 * 16 15 14 18 18 Si 1.86801 * 120.00178 * 10.43510 * 16 15 14 19 19 H 1.48492 * 109.46966 * 5.57074 * 18 16 15 20 20 H 1.48507 * 109.47254 * 125.57164 * 18 16 15 21 21 H 1.48499 * 109.47136 * 245.56805 * 18 16 15 22 22 C 1.51294 * 118.30920 * 51.35306 * 15 14 13 23 23 C 1.52960 * 109.41332 * 206.42113 * 11 10 7 24 24 H 1.09002 * 109.47680 * 300.00205 * 1 2 3 25 25 H 1.08998 * 109.47133 * 60.00498 * 1 2 3 26 26 H 1.09001 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47052 * 60.00364 * 5 3 2 28 28 H 1.08993 * 109.47317 * 299.99615 * 5 3 2 29 29 H 1.08998 * 109.46980 * 55.14211 * 6 5 3 30 30 H 1.09004 * 109.47277 * 295.13861 * 6 5 3 31 31 H 1.09003 * 109.46887 * 304.85329 * 9 7 6 32 32 H 1.09003 * 109.46953 * 64.84721 * 9 7 6 33 33 H 1.08993 * 109.47554 * 184.85437 * 9 7 6 34 34 H 1.00897 * 110.99703 * 343.56919 * 10 7 6 35 35 H 1.08997 * 109.47900 * 303.64495 * 13 11 10 36 36 H 1.08998 * 109.48112 * 63.66799 * 13 11 10 37 37 H 1.08993 * 109.62596 * 65.08299 * 14 13 11 38 38 H 1.09002 * 109.62699 * 185.66396 * 14 13 11 39 39 H 0.97003 * 120.00057 * 180.02562 * 17 16 15 40 40 H 1.09000 * 109.64198 * 188.94159 * 22 15 14 41 41 H 1.08998 * 109.62589 * 68.35582 * 22 15 14 42 42 H 1.09003 * 109.48150 * 296.34838 * 23 11 10 43 43 H 1.09002 * 109.48099 * 56.37135 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5229 2.8238 0.1227 8 1 5.9836 2.2631 -0.6907 9 6 5.9630 4.2871 0.0467 10 7 5.9417 2.2526 1.4097 11 6 6.5943 0.9503 1.2203 12 1 6.1346 0.4338 0.3777 13 6 8.0816 1.1653 0.9347 14 6 8.7451 -0.1855 0.6465 15 6 8.4610 -1.1174 1.8037 16 6 9.4829 -1.7988 2.4301 17 7 9.2058 -2.7535 3.2911 18 14 11.2611 -1.3659 2.0559 19 1 11.3045 -0.1783 1.1655 20 1 11.9736 -1.0611 3.3227 21 1 11.9189 -2.5141 1.3821 22 6 7.0269 -1.2824 2.2566 23 6 6.4258 0.1083 2.4861 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9563 0.7806 -0.8892 28 1 3.9557 0.7810 0.8908 29 1 3.5395 3.2576 0.8426 30 1 3.6848 3.2137 -0.9310 31 1 5.5783 4.7351 -0.8695 32 1 5.5724 4.8291 0.9080 33 1 7.0517 4.3396 0.0475 34 1 5.1600 2.1767 2.0431 35 1 8.1949 1.8179 0.0691 36 1 8.5554 1.6257 1.8016 37 1 8.3352 -0.6063 -0.2716 38 1 9.8216 -0.0497 0.5417 39 1 9.9248 -3.2327 3.7320 40 1 6.9993 -1.8512 3.1860 41 1 6.4579 -1.8047 1.4875 42 1 6.9389 0.5935 3.3165 43 1 5.3656 0.0121 2.7202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258351829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:31 Heat of formation + Delta-G solvation = -128.919855 kcal Electronic energy + Delta-G solvation = -21487.890619 eV Core-core repulsion = 18338.285077 eV Total energy + Delta-G solvation = -3149.605543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57724 -39.67738 -37.77733 -37.02317 -34.33666 -32.56349 -31.65495 -30.81330 -28.68864 -27.88612 -25.51618 -23.58611 -23.20538 -21.88400 -21.33072 -20.68961 -18.67641 -17.97796 -17.75771 -17.52619 -16.72918 -16.37492 -15.87570 -15.36999 -14.92346 -14.70344 -14.51889 -14.34088 -14.20070 -13.91891 -13.78730 -13.50488 -13.33461 -12.93791 -12.81758 -12.65580 -12.58088 -12.31295 -12.20305 -11.92945 -11.82341 -11.78540 -11.68467 -11.59396 -11.51158 -11.16926 -10.67139 -10.50310 -10.33340 -9.16132 -8.13427 -6.04309 1.10130 1.39754 1.45270 1.53087 1.74508 2.45347 3.10594 3.37484 3.66430 3.80940 4.00599 4.13760 4.25389 4.28909 4.30288 4.33252 4.52622 4.54857 4.65639 4.68885 4.75793 4.84918 4.90466 4.98322 5.04668 5.11279 5.13924 5.20891 5.22114 5.32989 5.37895 5.39381 5.42778 5.53600 5.68694 5.72042 5.84146 5.96184 6.37794 6.42435 6.65810 6.67479 7.01889 7.52792 8.97793 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.004697 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.187309 B = 5959.259740 C = 6910.700794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.466 3.534 4 O -0.535 6.535 5 C -0.119 4.119 6 C -0.117 4.117 7 C 0.085 3.915 8 H 0.070 0.930 9 C -0.131 4.131 10 N -0.687 5.687 11 C 0.112 3.888 12 H 0.041 0.959 13 C -0.086 4.086 14 C -0.029 4.029 15 C -0.493 4.493 16 C 0.018 3.982 17 N -0.933 5.933 18 Si 0.930 3.070 19 H -0.235 1.235 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.010 3.990 23 C -0.100 4.100 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.340 0.660 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.019 0.981 38 H 0.038 0.962 39 H 0.260 0.740 40 H 0.018 0.982 41 H -0.001 1.001 42 H 0.040 0.960 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 9.627 -8.211 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.310 3.690 4 O -0.425 6.425 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.025 4.025 8 H 0.089 0.911 9 C -0.189 4.189 10 N -0.319 5.319 11 C 0.003 3.997 12 H 0.059 0.941 13 C -0.125 4.125 14 C -0.067 4.067 15 C -0.512 4.512 16 C -0.180 4.180 17 N -0.574 5.574 18 Si 0.757 3.243 19 H -0.159 1.159 20 H -0.218 1.218 21 H -0.211 1.211 22 C -0.028 4.028 23 C -0.139 4.139 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.146 0.854 27 H 0.137 0.863 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.018 0.982 42 H 0.059 0.941 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.301 10.144 -8.079 17.874 hybrid contribution -0.007 -0.937 0.198 0.958 sum -12.308 9.207 -7.882 17.274 Atomic orbital electron populations 1.23540 0.74834 1.05601 1.02595 1.86545 1.25131 1.33282 1.83644 1.24109 0.92739 0.81019 0.71086 1.90637 1.67973 1.37062 1.46861 1.21590 0.86429 1.00893 1.06733 1.21980 0.96206 0.93197 1.04224 1.21676 0.92259 0.97127 0.91434 0.91148 1.21708 1.01153 0.94333 1.01662 1.60608 1.33262 1.25602 1.12472 1.21277 0.94737 0.87435 0.96260 0.94146 1.21437 0.95022 0.96669 0.99335 1.19999 0.97374 0.93742 0.95567 1.20691 0.92833 1.22945 1.14777 1.25623 1.02487 0.94473 0.95367 1.70035 1.33370 1.23294 1.30675 0.85921 0.80928 0.79475 0.77981 1.15937 1.21800 1.21117 1.19301 0.94352 0.92971 0.96184 1.21652 0.98080 0.97036 0.97101 0.91954 0.91634 0.85439 0.86344 0.87884 0.91026 0.89898 0.91376 0.92689 0.93092 0.84010 0.93104 0.94188 0.96239 0.94367 0.93079 0.96322 0.98212 0.94145 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.37 -8.46 10.57 -51.42 -0.54 -9.00 16 3 C 0.47 11.22 7.96 71.24 0.57 11.79 16 4 O -0.54 -15.09 15.67 21.97 0.34 -14.75 16 5 C -0.12 -2.52 5.08 29.85 0.15 -2.37 16 6 C -0.12 -2.39 3.86 30.60 0.12 -2.27 16 7 C 0.08 1.91 2.57 44.91 0.12 2.02 16 8 H 0.07 1.65 7.31 -2.39 -0.02 1.63 16 9 C -0.13 -2.69 9.52 71.98 0.69 -2.01 16 10 N -0.69 -18.95 5.87 -469.61 -2.76 -21.71 16 11 C 0.11 3.80 1.40 44.89 0.06 3.86 16 12 H 0.04 1.35 6.85 -2.39 -0.02 1.33 16 13 C -0.09 -3.28 5.46 30.66 0.17 -3.12 16 14 C -0.03 -1.28 5.65 30.11 0.17 -1.11 16 15 C -0.49 -25.67 5.48 -16.16 -0.09 -25.76 16 16 C 0.02 1.00 5.45 84.65 0.46 1.46 16 17 N -0.93 -55.36 12.81 21.45 0.27 -55.09 16 18 Si 0.93 42.87 27.95 68.60 1.92 44.79 16 19 H -0.24 -9.98 5.56 99.48 0.55 -9.43 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 C 0.01 0.49 5.93 30.11 0.18 0.67 16 23 C -0.10 -3.97 5.22 30.66 0.16 -3.81 16 24 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 25 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 26 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.10 2.34 6.37 -2.39 -0.02 2.33 16 29 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 30 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.34 8.83 7.13 -89.70 -0.64 8.19 16 35 H 0.05 1.71 7.97 -2.39 -0.02 1.69 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.04 1.69 4.35 -2.39 -0.01 1.68 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 40 H 0.02 1.02 7.18 -2.39 -0.02 1.00 16 41 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.70 8.05 -2.39 -0.02 1.69 16 Total: -1.00 -63.18 335.93 3.37 -59.81 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.19 Total: 14.94 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.95 Total: -19.00 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -2.48 Total: -76.79 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.20 Total: -23.75 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.92 Total: 44.79 kcal Total: -63.18 3.37 -59.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258351829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.110 kcal (2) G-P(sol) polarization free energy of solvation -63.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds