Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45204 * 109.46922 * 2 1 4 4 C 1.34232 * 116.99621 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00313 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99938 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.47389 * 185.79037 * 6 4 3 8 8 C 1.46901 * 110.99990 * 195.41182 * 7 6 4 9 9 C 1.50695 * 109.47104 * 159.74299 * 8 7 6 10 10 H 1.08008 * 119.99750 * 354.23641 * 9 8 7 11 11 C 1.37877 * 120.00099 * 174.23848 * 9 8 7 12 12 N 1.31511 * 119.99856 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99929 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47499 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47396 * 119.99917 * 13 11 9 16 16 H 1.48499 * 109.46928 * 240.00026 * 13 11 9 17 17 C 1.46897 * 110.99713 * 71.45665 * 7 6 4 18 18 H 1.08997 * 109.47279 * 322.68683 * 17 7 6 19 19 C 1.53001 * 109.46853 * 202.69123 * 17 7 6 20 20 C 1.52999 * 109.47168 * 82.69308 * 17 7 6 21 21 C 1.53006 * 109.47023 * 294.14904 * 20 17 7 22 22 C 1.53001 * 117.51588 * 113.30851 * 21 20 17 23 23 C 1.52992 * 117.49726 * 181.93712 * 21 20 17 24 24 H 1.08998 * 109.47072 * 60.00011 * 1 2 3 25 25 H 1.08999 * 109.47422 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46910 * 300.00189 * 1 2 3 27 27 H 1.09003 * 109.46910 * 239.99811 * 2 1 3 28 28 H 1.08998 * 109.47072 * 119.99989 * 2 1 3 29 29 H 1.09003 * 109.46676 * 65.78997 * 6 4 3 30 30 H 1.08999 * 109.47288 * 305.79281 * 6 4 3 31 31 H 1.09000 * 109.46967 * 279.74260 * 8 7 6 32 32 H 1.09000 * 109.47026 * 39.74209 * 8 7 6 33 33 H 0.96999 * 119.99491 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.46933 * 294.03258 * 19 17 7 35 35 H 1.08991 * 109.47511 * 54.03244 * 19 17 7 36 36 H 1.09001 * 109.47297 * 174.03317 * 19 17 7 37 37 H 1.08997 * 109.47085 * 174.15213 * 20 17 7 38 38 H 1.08998 * 109.47266 * 54.14781 * 20 17 7 39 39 H 1.08995 * 115.55161 * 327.61322 * 21 20 17 40 40 H 1.08994 * 117.50131 * 214.97260 * 22 21 20 41 41 H 1.09007 * 117.49811 * 359.97438 * 22 21 20 42 42 H 1.09003 * 117.50097 * 359.97438 * 23 21 20 43 43 H 1.09002 * 117.49744 * 144.97655 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3812 2.8632 -0.1414 8 6 6.0099 4.1421 0.2150 9 6 7.4626 3.9133 0.5439 10 1 7.8553 2.9079 0.5842 11 6 8.2904 4.9873 0.7934 12 7 7.8124 6.2114 0.7439 13 14 10.0914 4.7036 1.2004 14 1 10.3772 3.2463 1.1924 15 1 10.9404 5.3806 0.1874 16 1 10.3882 5.2583 2.5455 17 6 5.7593 2.4511 -1.4997 18 1 5.0499 1.7084 -1.8648 19 6 7.1644 1.8461 -1.4765 20 6 5.7438 3.6694 -2.4252 21 6 4.3105 4.1869 -2.5632 22 6 3.9959 5.5629 -1.9729 23 6 4.0770 5.3815 -3.4900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.6705 3.4345 0.9361 30 1 3.5039 3.5027 -0.8347 31 1 5.9319 4.8320 -0.6253 32 1 5.5036 4.5668 1.0819 33 1 8.3949 6.9670 0.9191 34 1 7.8879 2.6177 -1.2134 35 1 7.2029 1.0451 -0.7384 36 1 7.4034 1.4445 -2.4613 37 1 6.1235 3.3850 -3.4065 38 1 6.3741 4.4531 -2.0048 39 1 3.5299 3.4278 -2.5142 40 1 3.0083 5.7091 -1.5356 41 1 4.8100 6.0997 -1.4857 42 1 4.9445 5.7992 -4.0010 43 1 3.1429 5.4082 -4.0510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258471225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = -46.546970 kcal Electronic energy + Delta-G solvation = -22171.724578 eV Core-core repulsion = 19025.690992 eV Total energy + Delta-G solvation = -3146.033586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21409 -38.67605 -36.34392 -35.46129 -32.56880 -31.87946 -31.06386 -28.23872 -26.78915 -25.48059 -23.06345 -22.38879 -21.95297 -21.00226 -20.08783 -18.79463 -17.34882 -16.46531 -16.39341 -15.78974 -15.22575 -15.05394 -14.59987 -14.36075 -13.82707 -13.38499 -13.24217 -12.84420 -12.49826 -12.26185 -12.12255 -11.73840 -11.62781 -11.54371 -11.42179 -11.15806 -11.04700 -10.91015 -10.75052 -10.58937 -10.47667 -10.35533 -10.12604 -9.99069 -9.69297 -9.46163 -9.32415 -8.97721 -8.37082 -7.12096 -6.00774 -3.98279 2.68809 2.92252 3.32223 3.40736 3.46363 4.15114 4.45016 4.89220 4.91527 4.95376 5.05221 5.11937 5.25153 5.29027 5.33454 5.35384 5.62067 5.69576 5.70508 5.82236 5.86704 5.89307 5.92432 5.94903 6.17917 6.22312 6.33051 6.39083 6.52172 6.58834 6.63773 6.73530 6.85643 7.00007 7.17664 7.42707 7.51751 7.87469 8.08548 8.18880 8.28874 8.55971 9.09338 9.63495 11.09267 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.005954 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.611846 B = 4701.976766 C = 5410.193137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.369 6.369 4 C 0.456 3.544 5 O -0.489 6.489 6 C 0.045 3.955 7 N -0.513 5.513 8 C 0.178 3.822 9 C -0.498 4.498 10 H 0.072 0.928 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.891 3.109 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.104 3.896 18 H 0.053 0.947 19 C -0.142 4.142 20 C -0.134 4.134 21 C -0.151 4.151 22 C -0.178 4.178 23 C -0.186 4.186 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.032 0.968 32 H 0.020 0.980 33 H 0.259 0.741 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.031 0.969 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 -5.899 -5.544 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.287 6.287 4 C 0.297 3.703 5 O -0.373 6.373 6 C -0.084 4.084 7 N -0.238 5.238 8 C 0.054 3.946 9 C -0.536 4.536 10 H 0.090 0.910 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.719 3.281 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.005 4.005 18 H 0.071 0.929 19 C -0.199 4.199 20 C -0.172 4.172 21 C -0.169 4.169 22 C -0.215 4.215 23 C -0.223 4.223 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.581 -6.406 -5.179 14.212 hybrid contribution 0.589 0.361 -0.229 0.728 sum -10.993 -6.045 -5.408 13.661 Atomic orbital electron populations 1.21787 0.93076 1.02570 1.03356 1.22893 0.94944 0.81151 1.02293 1.86518 1.25726 1.31595 1.84883 1.24278 0.79715 0.93751 0.72522 1.90629 1.60025 1.42923 1.43770 1.22022 0.92729 0.88880 1.04741 1.62067 1.02198 1.35339 1.24178 1.20157 0.94329 0.83830 0.96237 1.21353 0.93438 0.93367 1.45476 0.91013 1.24945 0.98572 0.95137 0.95979 1.69949 1.35591 0.97935 1.50545 0.86544 0.85276 0.78402 0.77870 1.19593 1.21245 1.21204 1.21397 0.97567 0.94197 0.87302 0.92889 1.21980 0.97076 1.01896 0.98977 1.22071 0.94044 1.01219 0.99855 1.22408 0.98849 0.91067 1.04607 1.23202 1.03111 0.99779 0.95359 1.22952 1.02399 1.03537 0.93417 0.91663 0.90614 0.91568 0.91668 0.91518 0.87667 0.89659 0.95075 0.96186 0.93139 0.89282 0.92669 0.94956 0.92389 0.88059 0.88768 0.89448 0.87225 0.89086 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.37 -5.59 10.22 -39.26 -0.40 -5.99 16 4 C 0.46 8.10 7.33 36.00 0.26 8.36 16 5 O -0.49 -10.01 15.12 -18.75 -0.28 -10.29 16 6 C 0.05 0.82 5.32 -4.98 -0.03 0.79 16 7 N -0.51 -10.81 3.97 -229.52 -0.91 -11.72 16 8 C 0.18 4.27 4.19 -4.98 -0.02 4.24 16 9 C -0.50 -13.20 7.21 -34.44 -0.25 -13.45 16 10 H 0.07 1.94 6.14 -52.48 -0.32 1.62 16 11 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -25.31 13.29 55.43 0.74 -24.57 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.10 2.04 2.06 -67.71 -0.14 1.90 16 18 H 0.05 1.03 6.57 -51.93 -0.34 0.68 16 19 C -0.14 -2.85 8.24 37.16 0.31 -2.55 16 20 C -0.13 -2.42 4.52 -26.73 -0.12 -2.54 16 21 C -0.15 -2.39 3.63 -90.62 -0.33 -2.72 16 22 C -0.18 -2.79 8.69 -26.73 -0.23 -3.03 16 23 C -0.19 -2.63 10.25 -26.74 -0.27 -2.91 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.11 1.83 7.69 -51.93 -0.40 1.43 16 30 H 0.09 1.41 3.35 -51.93 -0.17 1.23 16 31 H 0.03 0.76 2.81 -51.93 -0.15 0.61 16 32 H 0.02 0.52 7.64 -51.93 -0.40 0.12 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.09 1.98 5.47 -51.93 -0.28 1.69 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 2.16 5.49 -51.93 -0.29 1.87 16 39 H 0.09 1.44 6.89 -51.93 -0.36 1.08 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.11 2.03 6.78 -51.93 -0.35 1.68 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -29.14 333.53 -8.00 -37.14 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.84 Total: 4.68 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.31 Total: -10.47 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.18 Total: -36.30 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.68 Total: -16.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.14 -8.00 -37.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258471225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.403 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds