Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45204 * 109.46922 * 2 1 4 4 C 1.34232 * 116.99621 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00313 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99938 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.47389 * 185.79037 * 6 4 3 8 8 C 1.46901 * 110.99990 * 195.41182 * 7 6 4 9 9 C 1.50695 * 109.47104 * 159.74299 * 8 7 6 10 10 H 1.08008 * 119.99750 * 354.23641 * 9 8 7 11 11 C 1.37877 * 120.00099 * 174.23848 * 9 8 7 12 12 N 1.31511 * 119.99856 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99929 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47499 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47396 * 119.99917 * 13 11 9 16 16 H 1.48499 * 109.46928 * 240.00026 * 13 11 9 17 17 C 1.46897 * 110.99713 * 71.45665 * 7 6 4 18 18 H 1.08997 * 109.47279 * 322.68683 * 17 7 6 19 19 C 1.53001 * 109.46853 * 202.69123 * 17 7 6 20 20 C 1.52999 * 109.47168 * 82.69308 * 17 7 6 21 21 C 1.53006 * 109.47023 * 294.14904 * 20 17 7 22 22 C 1.53001 * 117.51588 * 113.30851 * 21 20 17 23 23 C 1.52992 * 117.49726 * 181.93712 * 21 20 17 24 24 H 1.08998 * 109.47072 * 60.00011 * 1 2 3 25 25 H 1.08999 * 109.47422 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46910 * 300.00189 * 1 2 3 27 27 H 1.09003 * 109.46910 * 239.99811 * 2 1 3 28 28 H 1.08998 * 109.47072 * 119.99989 * 2 1 3 29 29 H 1.09003 * 109.46676 * 65.78997 * 6 4 3 30 30 H 1.08999 * 109.47288 * 305.79281 * 6 4 3 31 31 H 1.09000 * 109.46967 * 279.74260 * 8 7 6 32 32 H 1.09000 * 109.47026 * 39.74209 * 8 7 6 33 33 H 0.96999 * 119.99491 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.46933 * 294.03258 * 19 17 7 35 35 H 1.08991 * 109.47511 * 54.03244 * 19 17 7 36 36 H 1.09001 * 109.47297 * 174.03317 * 19 17 7 37 37 H 1.08997 * 109.47085 * 174.15213 * 20 17 7 38 38 H 1.08998 * 109.47266 * 54.14781 * 20 17 7 39 39 H 1.08995 * 115.55161 * 327.61322 * 21 20 17 40 40 H 1.08994 * 117.50131 * 214.97260 * 22 21 20 41 41 H 1.09007 * 117.49811 * 359.97438 * 22 21 20 42 42 H 1.09003 * 117.50097 * 359.97438 * 23 21 20 43 43 H 1.09002 * 117.49744 * 144.97655 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3812 2.8632 -0.1414 8 6 6.0099 4.1421 0.2150 9 6 7.4626 3.9133 0.5439 10 1 7.8553 2.9079 0.5842 11 6 8.2904 4.9873 0.7934 12 7 7.8124 6.2114 0.7439 13 14 10.0914 4.7036 1.2004 14 1 10.3772 3.2463 1.1924 15 1 10.9404 5.3806 0.1874 16 1 10.3882 5.2583 2.5455 17 6 5.7593 2.4511 -1.4997 18 1 5.0499 1.7084 -1.8648 19 6 7.1644 1.8461 -1.4765 20 6 5.7438 3.6694 -2.4252 21 6 4.3105 4.1869 -2.5632 22 6 3.9959 5.5629 -1.9729 23 6 4.0770 5.3815 -3.4900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.6705 3.4345 0.9361 30 1 3.5039 3.5027 -0.8347 31 1 5.9319 4.8320 -0.6253 32 1 5.5036 4.5668 1.0819 33 1 8.3949 6.9670 0.9191 34 1 7.8879 2.6177 -1.2134 35 1 7.2029 1.0451 -0.7384 36 1 7.4034 1.4445 -2.4613 37 1 6.1235 3.3850 -3.4065 38 1 6.3741 4.4531 -2.0048 39 1 3.5299 3.4278 -2.5142 40 1 3.0083 5.7091 -1.5356 41 1 4.8100 6.0997 -1.4857 42 1 4.9445 5.7992 -4.0010 43 1 3.1429 5.4082 -4.0510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258471225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = -62.756515 kcal Electronic energy + Delta-G solvation = -22172.427477 eV Core-core repulsion = 19025.690992 eV Total energy + Delta-G solvation = -3146.736485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.61242 -40.11290 -37.65280 -36.90597 -34.60320 -33.06551 -32.35267 -30.04048 -28.29357 -27.17143 -24.32674 -23.90837 -23.24472 -22.33137 -21.41499 -20.41315 -18.78569 -18.31988 -17.63423 -17.28776 -16.78429 -16.51815 -16.25221 -15.79004 -15.02210 -14.86639 -14.71615 -14.09848 -13.92873 -13.60593 -13.41298 -13.25088 -13.15747 -12.97702 -12.81420 -12.65490 -12.53326 -12.47042 -12.42671 -12.19413 -12.07104 -11.71968 -11.56058 -11.46332 -11.17209 -11.05872 -10.93126 -10.65473 -10.42416 -8.78668 -8.08751 -6.12069 1.27534 1.41000 1.44253 1.55135 1.67700 2.46616 2.91376 3.23224 3.37169 3.73946 3.88333 4.01984 4.02783 4.10081 4.13701 4.21554 4.35355 4.36692 4.40004 4.52862 4.72600 4.75238 4.81293 4.87358 4.94884 4.95409 5.01250 5.05764 5.09976 5.16678 5.28286 5.31167 5.33352 5.41194 5.49593 5.68232 5.69960 5.85091 6.20535 6.46411 6.64279 6.91802 7.01547 7.53004 9.00077 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.005954 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.611846 B = 4701.976766 C = 5410.193137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.520 6.520 6 C 0.044 3.956 7 N -0.529 5.529 8 C 0.193 3.807 9 C -0.504 4.504 10 H 0.061 0.939 11 C 0.010 3.990 12 N -0.928 5.928 13 Si 0.948 3.052 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.284 1.284 17 C 0.106 3.894 18 H 0.061 0.939 19 C -0.137 4.137 20 C -0.124 4.124 21 C -0.158 4.158 22 C -0.186 4.186 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.033 0.967 32 H -0.006 1.006 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 -6.626 -6.751 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.308 3.692 5 O -0.408 6.408 6 C -0.085 4.085 7 N -0.254 5.254 8 C 0.068 3.932 9 C -0.543 4.543 10 H 0.080 0.920 11 C -0.188 4.188 12 N -0.570 5.570 13 Si 0.774 3.226 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.211 1.211 17 C -0.003 4.003 18 H 0.079 0.921 19 C -0.195 4.195 20 C -0.163 4.163 21 C -0.176 4.176 22 C -0.223 4.223 23 C -0.200 4.200 24 H 0.089 0.911 25 H 0.119 0.881 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.050 0.950 32 H 0.012 0.988 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.109 -7.141 -6.390 16.238 hybrid contribution 0.982 0.524 0.142 1.122 sum -12.127 -6.617 -6.247 15.162 Atomic orbital electron populations 1.21810 0.90067 1.04368 1.03751 1.23267 0.97240 0.79419 1.02249 1.86503 1.23859 1.33664 1.84145 1.24040 0.80466 0.92977 0.71752 1.90620 1.60982 1.43732 1.45449 1.22037 0.90984 0.89789 1.05663 1.61896 1.04257 1.33717 1.25529 1.19848 0.93039 0.85127 0.95159 1.21590 0.94935 0.92842 1.44924 0.92043 1.25604 1.02138 0.94977 0.96100 1.70045 1.36799 0.98519 1.51605 0.85651 0.81091 0.78210 0.77599 1.19439 1.20657 1.21050 1.21400 0.97167 0.94838 0.86848 0.92115 1.21898 0.97027 1.00587 0.99958 1.21879 0.95255 0.99342 0.99800 1.22327 0.97538 0.91571 1.06148 1.23098 1.02781 0.99489 0.96946 1.23037 1.03627 1.00968 0.92340 0.91086 0.88097 0.91330 0.91522 0.91902 0.87503 0.87720 0.94955 0.98808 0.93119 0.91783 0.94287 0.92254 0.90932 0.91647 0.87465 0.87590 0.90753 0.89340 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 10.29 71.98 0.74 -1.34 16 2 C 0.05 1.16 6.19 71.98 0.45 1.61 16 3 O -0.36 -10.42 10.22 -51.44 -0.53 -10.95 16 4 C 0.46 16.10 7.33 71.24 0.52 16.63 16 5 O -0.52 -21.09 15.12 21.96 0.33 -20.75 16 6 C 0.04 1.56 5.32 85.56 0.46 2.02 16 7 N -0.53 -22.59 3.97 -880.08 -3.50 -26.08 16 8 C 0.19 9.53 4.19 85.56 0.36 9.89 16 9 C -0.50 -27.50 7.21 25.60 0.18 -27.31 16 10 H 0.06 3.42 6.14 -2.91 -0.02 3.41 16 11 C 0.01 0.53 5.46 84.66 0.46 0.99 16 12 N -0.93 -53.40 13.29 21.45 0.28 -53.11 16 13 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 17 C 0.11 4.11 2.06 44.92 0.09 4.20 16 18 H 0.06 2.28 6.57 -2.39 -0.02 2.26 16 19 C -0.14 -5.53 8.24 71.98 0.59 -4.94 16 20 C -0.12 -4.44 4.52 30.60 0.14 -4.30 16 21 C -0.16 -4.72 3.63 -10.79 -0.04 -4.76 16 22 C -0.19 -5.67 8.69 30.59 0.27 -5.41 16 23 C -0.16 -4.20 10.25 30.59 0.31 -3.88 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.11 3.74 7.69 -2.39 -0.02 3.72 16 30 H 0.11 3.31 3.35 -2.39 -0.01 3.31 16 31 H 0.03 1.63 2.81 -2.39 -0.01 1.62 16 32 H -0.01 -0.33 7.64 -2.39 -0.02 -0.35 16 33 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.06 2.90 5.47 -2.39 -0.01 2.89 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.85 5.49 -2.39 -0.01 2.83 16 39 H 0.11 2.97 6.89 -2.39 -0.02 2.96 16 40 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.07 2.83 6.78 -2.38 -0.02 2.82 16 42 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -63.49 333.53 4.15 -59.34 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.99 Total: 21.91 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 4.53 Total: -16.61 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -3.21 Total: -79.19 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.19 Total: -31.70 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -63.49 4.15 -59.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258471225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.414 kcal (2) G-P(sol) polarization free energy of solvation -63.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds