Wall clock time and date at job start Mon Mar 30 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45206 * 109.47165 * 2 1 4 4 C 1.34223 * 116.99888 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00530 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99639 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.47029 * 174.36623 * 6 4 3 8 8 C 1.46903 * 110.99939 * 164.78390 * 7 6 4 9 9 C 1.50702 * 109.46852 * 196.67292 * 8 7 6 10 10 H 1.07999 * 120.00101 * 5.40497 * 9 8 7 11 11 C 1.37875 * 119.99791 * 185.40573 * 9 8 7 12 12 N 1.31509 * 120.00281 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47321 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47637 * 119.99785 * 13 11 9 16 16 H 1.48501 * 109.47031 * 239.99568 * 13 11 9 17 17 C 1.46896 * 110.99994 * 288.73683 * 7 6 4 18 18 H 1.09006 * 109.47284 * 40.16342 * 17 7 6 19 19 C 1.53006 * 109.47084 * 160.16346 * 17 7 6 20 20 C 1.52997 * 109.47209 * 280.16094 * 17 7 6 21 21 C 1.53007 * 109.47059 * 66.58727 * 20 17 7 22 22 C 1.53000 * 117.49824 * 243.92590 * 21 20 17 23 23 C 1.52996 * 117.49783 * 175.30143 * 21 20 17 24 24 H 1.09003 * 109.46621 * 60.00276 * 1 2 3 25 25 H 1.08991 * 109.46807 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47113 * 300.00570 * 1 2 3 27 27 H 1.08990 * 109.47647 * 239.99922 * 2 1 3 28 28 H 1.09002 * 109.47091 * 119.99115 * 2 1 3 29 29 H 1.08996 * 109.47424 * 54.36571 * 6 4 3 30 30 H 1.08996 * 109.47264 * 294.36373 * 6 4 3 31 31 H 1.09003 * 109.47113 * 316.66578 * 8 7 6 32 32 H 1.08993 * 109.47282 * 76.67169 * 8 7 6 33 33 H 0.96999 * 120.00270 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.46766 * 68.53945 * 19 17 7 35 35 H 1.08998 * 109.46689 * 188.54121 * 19 17 7 36 36 H 1.08997 * 109.46656 * 308.54004 * 19 17 7 37 37 H 1.09001 * 109.47382 * 186.58720 * 20 17 7 38 38 H 1.09005 * 109.47353 * 306.58723 * 20 17 7 39 39 H 1.08998 * 115.54478 * 29.63363 * 21 20 17 40 40 H 1.08997 * 117.49841 * 359.97438 * 22 21 20 41 41 H 1.08999 * 117.49485 * 145.02323 * 22 21 20 42 42 H 1.09007 * 117.50023 * 214.97826 * 23 21 20 43 43 H 1.09004 * 117.50170 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3816 2.8632 0.1343 8 6 6.0088 4.1437 -0.2191 9 6 7.4799 3.9308 -0.4677 10 1 7.8900 2.9317 -0.4587 11 6 8.3021 5.0114 -0.7067 12 7 7.8026 6.2279 -0.7182 13 14 10.1254 4.7474 -1.0156 14 1 10.4335 3.2962 -0.9503 15 1 10.4804 5.2692 -2.3598 16 1 10.9118 5.4671 0.0182 17 6 5.7641 2.4461 1.4899 18 1 5.0861 1.6653 1.8347 19 6 7.1960 1.9071 1.4727 20 6 5.6823 3.6464 2.4350 21 6 4.2231 4.0832 2.5797 22 6 3.8487 5.4762 2.0697 23 6 3.9168 5.2050 3.5739 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.5066 3.5023 0.8340 30 1 3.6675 3.4350 -0.9373 31 1 5.5418 4.5406 -1.1205 32 1 5.8774 4.8509 0.5998 33 1 8.3810 6.9881 -0.8867 34 1 7.8894 2.7245 1.2757 35 1 7.4272 1.4593 2.4392 36 1 7.2911 1.1535 0.6910 37 1 6.0766 3.3671 3.4121 38 1 6.2694 4.4699 2.0282 39 1 3.4824 3.2910 2.4707 40 1 4.6421 6.0817 1.6314 41 1 2.8614 5.6007 1.6249 42 1 2.9742 5.1512 4.1188 43 1 4.7547 5.6316 4.1253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258471226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:19 Heat of formation + Delta-G solvation = -45.087406 kcal Electronic energy + Delta-G solvation = -22179.699383 eV Core-core repulsion = 19033.729088 eV Total energy + Delta-G solvation = -3145.970295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22644 -38.66795 -36.35313 -35.51463 -32.56463 -31.87844 -31.05823 -28.25684 -26.78055 -25.50721 -23.06991 -22.34196 -21.99438 -21.00155 -20.10127 -18.84166 -17.34924 -16.49993 -16.39317 -15.77250 -15.20802 -15.05003 -14.60789 -14.36221 -13.82615 -13.42150 -13.24257 -12.84700 -12.49046 -12.24906 -12.11928 -11.73200 -11.61066 -11.54329 -11.41990 -11.18667 -11.08703 -10.91535 -10.74800 -10.62186 -10.47920 -10.36187 -10.14242 -9.99660 -9.71060 -9.45054 -9.32845 -8.91891 -8.37493 -7.12260 -6.01340 -3.98563 2.68604 2.92136 3.31886 3.40456 3.45838 4.12252 4.44571 4.89112 4.91472 4.95174 5.03485 5.11797 5.25032 5.26464 5.31672 5.33995 5.62340 5.69513 5.70381 5.81839 5.87421 5.89060 5.91524 5.94026 6.16788 6.22866 6.30916 6.38252 6.52477 6.55811 6.64334 6.73532 6.85232 7.01722 7.19869 7.44285 7.51255 7.86388 8.08163 8.18704 8.28235 8.55633 9.08465 9.62811 11.08941 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.005921 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.143571 B = 4728.130727 C = 5417.249930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.369 6.369 4 C 0.456 3.544 5 O -0.489 6.489 6 C 0.041 3.959 7 N -0.513 5.513 8 C 0.182 3.818 9 C -0.500 4.500 10 H 0.075 0.925 11 C 0.054 3.946 12 N -0.899 5.899 13 Si 0.891 3.109 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.104 3.896 18 H 0.054 0.946 19 C -0.143 4.143 20 C -0.133 4.133 21 C -0.151 4.151 22 C -0.178 4.178 23 C -0.186 4.186 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.021 0.979 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 -6.022 5.496 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.287 6.287 4 C 0.298 3.702 5 O -0.374 6.374 6 C -0.088 4.088 7 N -0.238 5.238 8 C 0.058 3.942 9 C -0.539 4.539 10 H 0.093 0.907 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.719 3.281 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.005 4.005 18 H 0.073 0.927 19 C -0.201 4.201 20 C -0.172 4.172 21 C -0.169 4.169 22 C -0.215 4.215 23 C -0.223 4.223 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.674 -6.526 5.126 14.323 hybrid contribution 0.599 0.376 0.277 0.760 sum -11.075 -6.150 5.403 13.772 Atomic orbital electron populations 1.21786 0.93071 1.02572 1.03358 1.22895 0.94948 0.81149 1.02295 1.86516 1.25722 1.31600 1.84875 1.24271 0.79715 0.93739 0.72508 1.90628 1.60022 1.42940 1.43798 1.22086 0.92796 0.88962 1.04937 1.62084 1.02157 1.35060 1.24519 1.20060 0.94427 0.83695 0.96023 1.21419 0.92267 0.93706 1.46513 0.90696 1.24949 0.98618 0.95168 0.95903 1.69951 1.35364 0.98093 1.50554 0.86545 0.85467 0.78382 0.77715 1.19565 1.21182 1.21243 1.21400 0.97585 0.94313 0.87177 0.92750 1.22080 0.96728 1.02339 0.98918 1.22080 0.93362 1.01842 0.99907 1.22435 0.98641 0.91684 1.04134 1.23168 1.02927 0.99242 0.96123 1.22968 1.02404 1.04159 0.92774 0.91562 0.90613 0.91666 0.91517 0.91666 0.89258 0.87719 0.96048 0.95689 0.93131 0.88970 0.95132 0.92601 0.92334 0.88185 0.88679 0.87538 0.89360 0.89608 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.37 -5.59 10.22 -39.24 -0.40 -5.99 16 4 C 0.46 8.11 7.36 36.01 0.26 8.37 16 5 O -0.49 -10.02 15.04 -18.75 -0.28 -10.30 16 6 C 0.04 0.74 5.27 -4.97 -0.03 0.72 16 7 N -0.51 -10.85 4.03 -229.52 -0.92 -11.77 16 8 C 0.18 4.37 4.26 -4.97 -0.02 4.35 16 9 C -0.50 -13.24 7.08 -34.44 -0.24 -13.48 16 10 H 0.08 2.01 5.72 -52.49 -0.30 1.71 16 11 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 13 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.10 2.04 2.09 -67.71 -0.14 1.90 16 18 H 0.05 1.06 6.50 -51.93 -0.34 0.72 16 19 C -0.14 -2.90 7.94 37.16 0.30 -2.60 16 20 C -0.13 -2.42 4.50 -26.73 -0.12 -2.54 16 21 C -0.15 -2.37 3.67 -90.62 -0.33 -2.70 16 22 C -0.18 -2.74 8.72 -26.73 -0.23 -2.97 16 23 C -0.19 -2.59 10.25 -26.73 -0.27 -2.87 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.09 1.48 3.10 -51.93 -0.16 1.31 16 30 H 0.10 1.82 7.73 -51.93 -0.40 1.42 16 31 H 0.02 0.56 7.72 -51.93 -0.40 0.16 16 32 H 0.03 0.62 3.45 -51.93 -0.18 0.44 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.09 2.05 5.37 -51.93 -0.28 1.77 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 1.19 8.05 -51.93 -0.42 0.77 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.10 2.12 5.43 -51.93 -0.28 1.84 16 39 H 0.10 1.46 6.81 -51.93 -0.35 1.11 16 40 H 0.11 1.91 7.03 -51.93 -0.37 1.55 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -29.16 333.14 -8.03 -37.19 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.84 Total: 4.72 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.32 Total: -10.41 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.19 Total: -36.39 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.68 Total: -16.29 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.16 -8.03 -37.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258471226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.895 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds