Wall clock time and date at job start Mon Mar 30 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45206 * 109.47165 * 2 1 4 4 C 1.34223 * 116.99888 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00530 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99639 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.47029 * 174.36623 * 6 4 3 8 8 C 1.46903 * 110.99939 * 164.78390 * 7 6 4 9 9 C 1.50702 * 109.46852 * 196.67292 * 8 7 6 10 10 H 1.07999 * 120.00101 * 5.40497 * 9 8 7 11 11 C 1.37875 * 119.99791 * 185.40573 * 9 8 7 12 12 N 1.31509 * 120.00281 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47321 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47637 * 119.99785 * 13 11 9 16 16 H 1.48501 * 109.47031 * 239.99568 * 13 11 9 17 17 C 1.46896 * 110.99994 * 288.73683 * 7 6 4 18 18 H 1.09006 * 109.47284 * 40.16342 * 17 7 6 19 19 C 1.53006 * 109.47084 * 160.16346 * 17 7 6 20 20 C 1.52997 * 109.47209 * 280.16094 * 17 7 6 21 21 C 1.53007 * 109.47059 * 66.58727 * 20 17 7 22 22 C 1.53000 * 117.49824 * 243.92590 * 21 20 17 23 23 C 1.52996 * 117.49783 * 175.30143 * 21 20 17 24 24 H 1.09003 * 109.46621 * 60.00276 * 1 2 3 25 25 H 1.08991 * 109.46807 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47113 * 300.00570 * 1 2 3 27 27 H 1.08990 * 109.47647 * 239.99922 * 2 1 3 28 28 H 1.09002 * 109.47091 * 119.99115 * 2 1 3 29 29 H 1.08996 * 109.47424 * 54.36571 * 6 4 3 30 30 H 1.08996 * 109.47264 * 294.36373 * 6 4 3 31 31 H 1.09003 * 109.47113 * 316.66578 * 8 7 6 32 32 H 1.08993 * 109.47282 * 76.67169 * 8 7 6 33 33 H 0.96999 * 120.00270 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.46766 * 68.53945 * 19 17 7 35 35 H 1.08998 * 109.46689 * 188.54121 * 19 17 7 36 36 H 1.08997 * 109.46656 * 308.54004 * 19 17 7 37 37 H 1.09001 * 109.47382 * 186.58720 * 20 17 7 38 38 H 1.09005 * 109.47353 * 306.58723 * 20 17 7 39 39 H 1.08998 * 115.54478 * 29.63363 * 21 20 17 40 40 H 1.08997 * 117.49841 * 359.97438 * 22 21 20 41 41 H 1.08999 * 117.49485 * 145.02323 * 22 21 20 42 42 H 1.09007 * 117.50023 * 214.97826 * 23 21 20 43 43 H 1.09004 * 117.50170 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3816 2.8632 0.1343 8 6 6.0088 4.1437 -0.2191 9 6 7.4799 3.9308 -0.4677 10 1 7.8900 2.9317 -0.4587 11 6 8.3021 5.0114 -0.7067 12 7 7.8026 6.2279 -0.7182 13 14 10.1254 4.7474 -1.0156 14 1 10.4335 3.2962 -0.9503 15 1 10.4804 5.2692 -2.3598 16 1 10.9118 5.4671 0.0182 17 6 5.7641 2.4461 1.4899 18 1 5.0861 1.6653 1.8347 19 6 7.1960 1.9071 1.4727 20 6 5.6823 3.6464 2.4350 21 6 4.2231 4.0832 2.5797 22 6 3.8487 5.4762 2.0697 23 6 3.9168 5.2050 3.5739 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.5066 3.5023 0.8340 30 1 3.6675 3.4350 -0.9373 31 1 5.5418 4.5406 -1.1205 32 1 5.8774 4.8509 0.5998 33 1 8.3810 6.9881 -0.8867 34 1 7.8894 2.7245 1.2757 35 1 7.4272 1.4593 2.4392 36 1 7.2911 1.1535 0.6910 37 1 6.0766 3.3671 3.4121 38 1 6.2694 4.4699 2.0282 39 1 3.4824 3.2910 2.4707 40 1 4.6421 6.0817 1.6314 41 1 2.8614 5.6007 1.6249 42 1 2.9742 5.1512 4.1188 43 1 4.7547 5.6316 4.1253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258471226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:19 Heat of formation + Delta-G solvation = -61.349939 kcal Electronic energy + Delta-G solvation = -22180.404579 eV Core-core repulsion = 19033.729088 eV Total energy + Delta-G solvation = -3146.675491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62649 -40.10240 -37.66030 -36.95884 -34.59367 -33.06721 -32.34992 -30.05925 -28.29185 -27.19700 -24.29968 -23.90082 -23.26325 -22.32997 -21.42515 -20.46242 -18.79298 -18.35222 -17.63076 -17.23936 -16.80118 -16.51288 -16.23399 -15.79847 -15.02492 -14.90606 -14.70735 -14.09980 -13.92982 -13.60230 -13.39739 -13.24884 -13.12843 -13.01328 -12.81574 -12.64148 -12.53983 -12.49589 -12.43642 -12.23614 -12.05821 -11.72884 -11.57118 -11.46365 -11.14937 -11.06949 -10.92077 -10.62225 -10.43101 -8.79061 -8.09394 -6.12151 1.27199 1.41234 1.44484 1.55313 1.67456 2.46519 2.89970 3.23075 3.36949 3.73327 3.88073 4.00715 4.02606 4.09106 4.13575 4.22137 4.35622 4.36865 4.39737 4.52463 4.73218 4.74801 4.80366 4.87356 4.94847 4.95255 5.01645 5.05888 5.08506 5.16636 5.27152 5.30682 5.34364 5.40017 5.49415 5.68464 5.69981 5.84447 6.19144 6.44951 6.63935 6.91501 7.01111 7.52563 9.00074 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.005921 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.143571 B = 4728.130727 C = 5417.249930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.465 3.535 5 O -0.520 6.520 6 C 0.039 3.961 7 N -0.529 5.529 8 C 0.197 3.803 9 C -0.506 4.506 10 H 0.067 0.933 11 C 0.009 3.991 12 N -0.929 5.929 13 Si 0.948 3.052 14 H -0.269 1.269 15 H -0.285 1.285 16 H -0.281 1.281 17 C 0.106 3.894 18 H 0.061 0.939 19 C -0.139 4.139 20 C -0.124 4.124 21 C -0.160 4.160 22 C -0.185 4.185 23 C -0.162 4.162 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.107 0.893 31 H -0.005 1.005 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.584 -6.813 6.699 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.308 3.692 5 O -0.408 6.408 6 C -0.089 4.089 7 N -0.254 5.254 8 C 0.072 3.928 9 C -0.545 4.545 10 H 0.085 0.915 11 C -0.189 4.189 12 N -0.571 5.571 13 Si 0.775 3.225 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.207 1.207 17 C -0.003 4.003 18 H 0.079 0.921 19 C -0.196 4.196 20 C -0.162 4.162 21 C -0.177 4.177 22 C -0.222 4.222 23 C -0.199 4.199 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.013 0.987 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.169 -7.326 6.333 16.347 hybrid contribution 0.978 0.559 -0.092 1.130 sum -12.191 -6.767 6.241 15.277 Atomic orbital electron populations 1.21810 0.90058 1.04372 1.03755 1.23271 0.97246 0.79411 1.02256 1.86500 1.23842 1.33675 1.84133 1.24023 0.80472 0.92948 0.71742 1.90619 1.60980 1.43741 1.45477 1.22110 0.91043 0.89903 1.05871 1.61919 1.04227 1.33380 1.25851 1.19736 0.93305 0.84997 0.94737 1.21668 0.93695 0.93302 1.45807 0.91473 1.25621 1.02329 0.94990 0.95953 1.70050 1.36623 0.98696 1.51685 0.85642 0.81095 0.78275 0.77500 1.19288 1.21084 1.20683 1.21401 0.97114 0.94977 0.86779 0.92075 1.21986 0.96807 1.01037 0.99771 1.21882 0.94831 0.99753 0.99780 1.22338 0.97148 0.92231 1.06026 1.23091 1.02765 0.98556 0.97819 1.23055 1.03609 1.01485 0.91773 0.91319 0.88094 0.91090 0.91889 0.91522 0.87346 0.87530 0.98718 0.95838 0.93126 0.91366 0.92453 0.94305 0.90977 0.91699 0.87585 0.90788 0.87483 0.86703 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 10.29 71.98 0.74 -1.33 16 2 C 0.05 1.16 6.19 71.98 0.45 1.60 16 3 O -0.36 -10.42 10.22 -51.35 -0.52 -10.94 16 4 C 0.47 16.13 7.36 71.24 0.52 16.66 16 5 O -0.52 -21.10 15.04 21.97 0.33 -20.77 16 6 C 0.04 1.40 5.27 85.56 0.45 1.85 16 7 N -0.53 -22.64 4.03 -880.05 -3.54 -26.19 16 8 C 0.20 9.77 4.26 85.56 0.36 10.14 16 9 C -0.51 -27.49 7.08 25.60 0.18 -27.31 16 10 H 0.07 3.70 5.72 -2.91 -0.02 3.68 16 11 C 0.01 0.48 5.46 84.65 0.46 0.95 16 12 N -0.93 -53.57 13.29 21.45 0.28 -53.28 16 13 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 17 C 0.11 4.12 2.09 44.92 0.09 4.22 16 18 H 0.06 2.32 6.50 -2.38 -0.02 2.30 16 19 C -0.14 -5.62 7.94 71.98 0.57 -5.05 16 20 C -0.12 -4.43 4.50 30.60 0.14 -4.29 16 21 C -0.16 -4.75 3.67 -10.79 -0.04 -4.79 16 22 C -0.19 -5.53 8.72 30.60 0.27 -5.26 16 23 C -0.16 -4.11 10.25 30.59 0.31 -3.80 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.07 1.48 8.13 -2.39 -0.02 1.47 16 29 H 0.11 3.45 3.10 -2.39 -0.01 3.45 16 30 H 0.11 3.73 7.73 -2.39 -0.02 3.71 16 31 H -0.01 -0.28 7.72 -2.39 -0.02 -0.30 16 32 H 0.02 1.20 3.45 -2.39 -0.01 1.20 16 33 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.07 3.09 5.37 -2.39 -0.01 3.08 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.66 8.05 -2.39 -0.02 1.64 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.82 5.43 -2.38 -0.01 2.80 16 39 H 0.11 2.97 6.81 -2.39 -0.02 2.95 16 40 H 0.07 2.72 7.03 -2.39 -0.02 2.71 16 41 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -63.46 333.14 4.08 -59.38 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.99 Total: 22.08 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 4.51 Total: -16.42 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -3.26 Total: -79.47 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.19 Total: -31.71 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.46 4.08 -59.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258471226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.971 kcal (2) G-P(sol) polarization free energy of solvation -63.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds