Wall clock time and date at job start Mon Mar 30 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 C 1.53035 * 109.45810 * 270.03221 * 4 3 2 6 6 C 1.53202 * 109.31243 * 178.60148 * 5 4 3 7 7 N 1.46926 * 108.76365 * 54.64835 * 6 5 4 8 8 C 1.34781 * 120.62508 * 126.36462 * 7 6 5 9 9 O 1.21283 * 119.99588 * 180.02562 * 8 7 6 10 10 C 1.50699 * 120.00265 * 0.02562 * 8 7 6 11 11 C 1.53002 * 109.47147 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47095 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47134 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99589 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00215 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00197 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99990 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46987 * 90.00078 * 17 15 13 19 19 H 1.48494 * 109.47038 * 210.00160 * 17 15 13 20 20 H 1.48500 * 109.46657 * 330.00233 * 17 15 13 21 21 C 1.46925 * 118.74221 * 306.38440 * 7 6 5 22 22 C 1.53036 * 109.46226 * 149.96941 * 4 3 2 23 23 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 28 28 H 1.09003 * 109.46049 * 29.99644 * 4 3 2 29 29 H 1.09004 * 109.49663 * 298.55753 * 5 4 3 30 30 H 1.08995 * 109.50488 * 58.65965 * 5 4 3 31 31 H 1.09003 * 109.59139 * 294.86114 * 6 5 4 32 32 H 1.09003 * 109.70105 * 174.50511 * 6 5 4 33 33 H 1.09010 * 109.46764 * 299.99410 * 10 8 7 34 34 H 1.08991 * 109.47541 * 59.99151 * 10 8 7 35 35 H 1.08993 * 109.46520 * 299.99552 * 11 10 8 36 36 H 1.08998 * 109.47076 * 59.99696 * 11 10 8 37 37 H 1.08999 * 109.47389 * 299.99868 * 12 11 10 38 38 H 1.09003 * 109.47111 * 59.99605 * 12 11 10 39 39 H 0.97000 * 119.99681 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.58716 * 293.82580 * 21 7 6 41 41 H 1.08991 * 109.70364 * 173.46734 * 21 7 6 42 42 H 1.09000 * 109.50146 * 301.33913 * 22 4 3 43 43 H 1.09004 * 109.49521 * 61.44026 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9397 1.4995 1.4421 6 6 5.4693 1.5853 1.4377 7 7 5.8756 2.7386 0.6231 8 6 6.6976 3.6801 1.1276 9 8 7.0254 4.6276 0.4451 10 6 7.2094 3.5554 2.5395 11 6 8.1151 4.7460 2.8606 12 6 8.6342 4.6198 4.2943 13 6 9.5268 5.7922 4.6104 14 1 9.7061 6.5511 3.8632 15 6 10.1152 5.8954 5.8530 16 7 10.8945 6.9182 6.1287 17 14 9.8054 4.5823 7.1451 18 1 10.8313 3.5155 7.0225 19 1 9.8830 5.1906 8.4975 20 1 8.4559 3.9969 6.9422 21 6 5.3686 2.8462 -0.7517 22 6 3.8402 2.7459 -0.7227 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8630 0.6017 -0.5147 29 1 3.5278 2.3718 1.9496 30 1 3.6279 0.5941 1.9628 31 1 5.8854 0.6722 1.0119 32 1 5.8332 1.7117 2.4574 33 1 6.3672 3.5431 3.2315 34 1 7.7760 2.6298 2.6403 35 1 8.9572 4.7589 2.1688 36 1 7.5480 5.6714 2.7601 37 1 7.7919 4.6072 4.9860 38 1 9.2012 3.6943 4.3953 39 1 11.3081 6.9909 7.0031 40 1 5.7764 2.0360 -1.3561 41 1 5.6638 3.8047 -1.1783 42 1 3.4574 2.7278 -1.7431 43 1 3.4291 3.6064 -0.1946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261550756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:41 Heat of formation + Delta-G solvation = -105.825056 kcal Electronic energy + Delta-G solvation = -20684.667598 eV Core-core repulsion = 17536.063521 eV Total energy + Delta-G solvation = -3148.604077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31426 -38.74876 -36.59543 -34.35588 -32.84653 -32.11401 -31.35220 -30.74476 -28.36927 -25.19339 -23.95776 -23.38501 -22.77288 -21.13416 -20.06013 -18.93962 -17.44073 -16.77652 -16.58785 -16.04548 -15.74025 -15.62133 -14.91883 -14.43090 -14.24458 -14.09723 -13.78436 -13.35308 -13.02943 -12.86999 -12.62686 -12.56660 -12.30604 -12.22303 -11.93824 -11.62017 -11.52387 -11.45721 -11.25962 -10.91669 -10.82403 -10.77329 -9.98726 -9.87163 -9.75279 -9.67210 -9.39225 -9.11587 -8.75130 -8.49635 -5.99231 -3.96883 2.80749 2.94400 3.29101 3.32306 3.39392 3.42285 4.35345 4.41781 4.48252 4.64279 4.66082 4.73310 4.87004 4.90647 4.96334 4.98818 5.05136 5.19617 5.30795 5.33995 5.42115 5.47884 5.49920 5.55318 5.57781 5.59572 5.70913 5.74353 5.80526 5.95569 6.10551 6.43997 6.57772 6.71229 6.89889 6.93865 7.35593 7.42504 7.47387 7.84186 8.34314 8.60993 9.07695 9.62793 11.14492 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.003243 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.643771 B = 8633.048330 C = 9302.327055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.092 3.908 5 C -0.158 4.158 6 C 0.110 3.890 7 N -0.624 5.624 8 C 0.517 3.483 9 O -0.533 6.533 10 C -0.141 4.141 11 C -0.088 4.088 12 C -0.014 4.014 13 C -0.518 4.518 14 H 0.073 0.927 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.114 3.886 22 C -0.130 4.130 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.262 0.738 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.182 -18.271 -12.848 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.302 6.302 4 C 0.034 3.966 5 C -0.196 4.196 6 C -0.013 4.013 7 N -0.359 5.359 8 C 0.306 3.694 9 O -0.409 6.409 10 C -0.181 4.181 11 C -0.126 4.126 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.009 4.009 22 C -0.169 4.169 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.002 -17.503 -13.072 28.953 hybrid contribution -0.010 -1.036 0.839 1.333 sum -19.012 -18.539 -12.233 29.236 Atomic orbital electron populations 1.21747 0.93781 1.02192 1.03192 1.22499 0.95595 0.83991 0.99943 1.87947 1.20918 1.26286 1.95054 1.22066 0.80995 0.98203 0.95287 1.22448 0.95796 1.03638 0.97731 1.21689 0.93959 0.88700 0.96974 1.48256 1.49109 1.24531 1.14034 1.21190 0.77254 0.80994 0.89930 1.90683 1.57371 1.31458 1.61371 1.21901 1.01363 1.02986 0.91808 1.21277 0.97539 0.94892 0.98856 1.19604 0.96140 0.97289 0.92112 1.21165 1.27315 1.07539 0.99599 0.90932 1.25058 0.94752 0.95550 0.98327 1.69926 1.32068 1.30042 1.22343 0.86756 0.79179 0.82184 0.81003 1.20363 1.21462 1.19047 1.21493 0.92121 1.03797 0.83467 1.21997 0.95768 0.97670 1.01426 0.91794 0.91175 0.91882 0.93406 0.93498 0.92094 0.90303 0.90582 0.91378 0.88674 0.89385 0.89402 0.92087 0.92067 0.96684 0.97132 0.92808 0.91724 0.88314 0.90184 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.39 6.47 37.16 0.24 0.63 16 3 O -0.38 -3.65 9.99 -35.23 -0.35 -4.00 16 4 C 0.09 0.78 2.57 -26.69 -0.07 0.71 16 5 C -0.16 -1.31 5.69 -26.61 -0.15 -1.46 16 6 C 0.11 0.98 6.34 -3.71 -0.02 0.95 16 7 N -0.62 -7.52 2.97 -172.76 -0.51 -8.03 16 8 C 0.52 8.26 7.70 -10.98 -0.08 8.17 16 9 O -0.53 -10.64 15.40 5.56 0.09 -10.55 16 10 C -0.14 -2.22 4.05 -27.88 -0.11 -2.34 16 11 C -0.09 -1.84 4.44 -26.73 -0.12 -1.96 16 12 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 13 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 14 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -28.52 13.96 55.43 0.77 -27.75 16 17 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 21 C 0.11 1.20 6.43 -3.71 -0.02 1.17 16 22 C -0.13 -1.21 5.73 -26.61 -0.15 -1.36 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.29 7.84 -51.93 -0.41 -0.12 16 27 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.52 7.84 -51.93 -0.41 0.11 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.81 5.93 -51.93 -0.31 0.51 16 33 H 0.09 1.24 7.69 -51.92 -0.40 0.84 16 34 H 0.09 1.21 7.94 -51.93 -0.41 0.80 16 35 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 37 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.22 7.01 -51.93 -0.36 0.85 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -34.33 341.95 -7.88 -42.21 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -7.70 Total: -3.97 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -0.66 Total: -10.22 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.26 Total: -35.77 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.27 Total: -14.56 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.33 -7.88 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261550756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.617 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds