Wall clock time and date at job start Mon Mar 30 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 C 1.53035 * 109.45810 * 270.03221 * 4 3 2 6 6 C 1.53202 * 109.31243 * 178.60148 * 5 4 3 7 7 N 1.46926 * 108.76365 * 54.64835 * 6 5 4 8 8 C 1.34781 * 120.62508 * 126.36462 * 7 6 5 9 9 O 1.21283 * 119.99588 * 180.02562 * 8 7 6 10 10 C 1.50699 * 120.00265 * 0.02562 * 8 7 6 11 11 C 1.53002 * 109.47147 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47095 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47134 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99589 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00215 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00197 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99990 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46987 * 90.00078 * 17 15 13 19 19 H 1.48494 * 109.47038 * 210.00160 * 17 15 13 20 20 H 1.48500 * 109.46657 * 330.00233 * 17 15 13 21 21 C 1.46925 * 118.74221 * 306.38440 * 7 6 5 22 22 C 1.53036 * 109.46226 * 149.96941 * 4 3 2 23 23 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 28 28 H 1.09003 * 109.46049 * 29.99644 * 4 3 2 29 29 H 1.09004 * 109.49663 * 298.55753 * 5 4 3 30 30 H 1.08995 * 109.50488 * 58.65965 * 5 4 3 31 31 H 1.09003 * 109.59139 * 294.86114 * 6 5 4 32 32 H 1.09003 * 109.70105 * 174.50511 * 6 5 4 33 33 H 1.09010 * 109.46764 * 299.99410 * 10 8 7 34 34 H 1.08991 * 109.47541 * 59.99151 * 10 8 7 35 35 H 1.08993 * 109.46520 * 299.99552 * 11 10 8 36 36 H 1.08998 * 109.47076 * 59.99696 * 11 10 8 37 37 H 1.08999 * 109.47389 * 299.99868 * 12 11 10 38 38 H 1.09003 * 109.47111 * 59.99605 * 12 11 10 39 39 H 0.97000 * 119.99681 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.58716 * 293.82580 * 21 7 6 41 41 H 1.08991 * 109.70364 * 173.46734 * 21 7 6 42 42 H 1.09000 * 109.50146 * 301.33913 * 22 4 3 43 43 H 1.09004 * 109.49521 * 61.44026 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9397 1.4995 1.4421 6 6 5.4693 1.5853 1.4377 7 7 5.8756 2.7386 0.6231 8 6 6.6976 3.6801 1.1276 9 8 7.0254 4.6276 0.4451 10 6 7.2094 3.5554 2.5395 11 6 8.1151 4.7460 2.8606 12 6 8.6342 4.6198 4.2943 13 6 9.5268 5.7922 4.6104 14 1 9.7061 6.5511 3.8632 15 6 10.1152 5.8954 5.8530 16 7 10.8945 6.9182 6.1287 17 14 9.8054 4.5823 7.1451 18 1 10.8313 3.5155 7.0225 19 1 9.8830 5.1906 8.4975 20 1 8.4559 3.9969 6.9422 21 6 5.3686 2.8462 -0.7517 22 6 3.8402 2.7459 -0.7227 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8630 0.6017 -0.5147 29 1 3.5278 2.3718 1.9496 30 1 3.6279 0.5941 1.9628 31 1 5.8854 0.6722 1.0119 32 1 5.8332 1.7117 2.4574 33 1 6.3672 3.5431 3.2315 34 1 7.7760 2.6298 2.6403 35 1 8.9572 4.7589 2.1688 36 1 7.5480 5.6714 2.7601 37 1 7.7919 4.6072 4.9860 38 1 9.2012 3.6943 4.3953 39 1 11.3081 6.9909 7.0031 40 1 5.7764 2.0360 -1.3561 41 1 5.6638 3.8047 -1.1783 42 1 3.4574 2.7278 -1.7431 43 1 3.4291 3.6064 -0.1946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261550756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:41 Heat of formation + Delta-G solvation = -128.574559 kcal Electronic energy + Delta-G solvation = -20685.654091 eV Core-core repulsion = 17536.063521 eV Total energy + Delta-G solvation = -3149.590569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31684 -39.58780 -37.50097 -36.16464 -34.24400 -33.48608 -32.23150 -31.40642 -30.04903 -26.42284 -25.08288 -24.30998 -23.45048 -22.31165 -21.54835 -19.98642 -18.85186 -18.31544 -17.54114 -16.94754 -16.86321 -16.45602 -16.19731 -15.60554 -15.52183 -14.97284 -14.81652 -14.65596 -14.37923 -14.04542 -13.84755 -13.45979 -13.29132 -13.16839 -12.89210 -12.86350 -12.64526 -12.49077 -12.27668 -12.07541 -11.85013 -11.77695 -11.68147 -11.49967 -11.48535 -11.30928 -10.77064 -10.74291 -10.38801 -9.72580 -8.26984 -6.32781 1.39032 1.43041 1.55092 1.61260 1.98361 2.39992 2.69616 3.08008 3.54543 3.73486 3.87522 4.02939 4.07288 4.12955 4.21462 4.22607 4.28265 4.36056 4.40558 4.48511 4.53697 4.64768 4.75723 4.79805 4.82587 4.89907 4.93832 4.94960 4.99899 5.04197 5.05094 5.11494 5.23792 5.32093 5.52472 5.59187 5.60193 5.68505 6.30212 6.34255 6.36135 6.75881 7.17788 7.31524 8.90744 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.003243 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.643771 B = 8633.048330 C = 9302.327055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.405 6.405 4 C 0.092 3.908 5 C -0.152 4.152 6 C 0.104 3.896 7 N -0.615 5.615 8 C 0.512 3.488 9 O -0.589 6.589 10 C -0.130 4.130 11 C -0.081 4.081 12 C -0.008 4.008 13 C -0.540 4.540 14 H 0.018 0.982 15 C -0.005 4.005 16 N -0.958 5.958 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.287 1.287 20 H -0.235 1.235 21 C 0.113 3.887 22 C -0.124 4.124 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.031 0.969 39 H 0.266 0.734 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.832 -22.666 -11.989 33.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.325 6.325 4 C 0.035 3.965 5 C -0.191 4.191 6 C -0.018 4.018 7 N -0.348 5.348 8 C 0.302 3.698 9 O -0.469 6.469 10 C -0.169 4.169 11 C -0.119 4.119 12 C -0.045 4.045 13 C -0.578 4.578 14 H 0.036 0.964 15 C -0.201 4.201 16 N -0.598 5.598 17 Si 0.785 3.215 18 H -0.188 1.188 19 H -0.213 1.213 20 H -0.158 1.158 21 C -0.010 4.010 22 C -0.163 4.163 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.698 -21.948 -12.236 32.556 hybrid contribution 0.484 0.399 0.472 0.785 sum -20.215 -21.550 -11.764 31.803 Atomic orbital electron populations 1.21776 0.93495 1.03219 1.02436 1.22695 0.95934 0.82967 1.01036 1.87929 1.21358 1.28067 1.95188 1.22080 0.80928 0.98058 0.95446 1.22405 0.95205 1.03814 0.97670 1.22019 0.94423 0.88180 0.97185 1.48298 1.47392 1.24298 1.14818 1.21222 0.77724 0.81039 0.89825 1.90670 1.59773 1.33863 1.62579 1.21752 1.01431 1.01389 0.92331 1.21049 0.97498 0.96526 0.96817 1.19537 0.95637 0.95466 0.93893 1.21558 1.28877 1.08481 0.98914 0.96366 1.26226 0.94065 0.98527 1.01233 1.70113 1.33546 1.32805 1.23363 0.85475 0.80850 0.78530 0.76641 1.18766 1.21294 1.15781 1.21583 0.93034 1.03481 0.82889 1.21913 0.94592 0.97655 1.02102 0.92658 0.89272 0.92540 0.92278 0.92317 0.89970 0.92309 0.88346 0.88506 0.87758 0.86848 0.86258 0.94486 0.94797 0.95155 0.95073 0.92514 0.89098 0.90911 0.89021 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.54 6.47 71.98 0.47 1.01 16 3 O -0.41 -6.83 9.99 -148.98 -1.49 -8.32 16 4 C 0.09 1.30 2.57 30.62 0.08 1.38 16 5 C -0.15 -2.03 5.69 30.67 0.17 -1.86 16 6 C 0.10 1.42 6.34 86.37 0.55 1.97 16 7 N -0.61 -13.59 2.97 -818.88 -2.43 -16.02 16 8 C 0.51 16.01 7.70 87.66 0.67 16.68 16 9 O -0.59 -24.40 15.40 -3.04 -0.05 -24.45 16 10 C -0.13 -3.81 4.05 29.85 0.12 -3.69 16 11 C -0.08 -3.43 4.44 30.59 0.14 -3.29 16 12 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 13 C -0.54 -32.78 9.66 25.60 0.25 -32.53 16 14 H 0.02 1.24 7.99 -2.91 -0.02 1.22 16 15 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 16 N -0.96 -62.23 13.96 21.45 0.30 -61.93 16 17 Si 0.96 43.94 27.47 68.60 1.88 45.82 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 20 H -0.23 -9.50 6.54 99.48 0.65 -8.85 16 21 C 0.11 2.22 6.43 86.36 0.56 2.78 16 22 C -0.12 -2.14 5.73 30.67 0.18 -1.96 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.51 7.84 -2.39 -0.02 0.49 16 27 H 0.06 0.50 8.08 -2.39 -0.02 0.48 16 28 H 0.08 0.83 7.79 -2.39 -0.02 0.82 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.10 0.91 7.84 -2.39 -0.02 0.89 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 1.28 5.93 -2.39 -0.01 1.27 16 33 H 0.11 2.78 7.69 -2.38 -0.02 2.77 16 34 H 0.12 2.79 7.94 -2.39 -0.02 2.77 16 35 H 0.04 1.70 8.10 -2.39 -0.02 1.69 16 36 H 0.03 1.58 8.10 -2.39 -0.02 1.56 16 37 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 38 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 39 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.84 7.01 -2.39 -0.02 1.83 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -79.55 341.95 3.61 -75.94 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.90 Total: 9.30 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 4.50 Total: -20.34 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.13 Total: -77.95 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.53 Total: -32.76 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -79.55 3.61 -75.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261550756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.634 kcal (2) G-P(sol) polarization free energy of solvation -79.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds