Wall clock time and date at job start Mon Mar 30 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45192 * 109.47105 * 2 1 4 4 C 1.34230 * 117.00299 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99391 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00536 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.46560 * 299.99882 * 6 4 3 8 8 N 1.46905 * 109.47095 * 179.97438 * 6 4 3 9 9 C 1.46898 * 110.99865 * 155.00005 * 8 6 4 10 10 C 1.52998 * 109.47003 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.47090 * 304.99487 * 10 9 8 12 12 C 1.53001 * 109.47331 * 64.99639 * 10 9 8 13 13 C 1.52999 * 109.46887 * 185.00094 * 10 9 8 14 14 C 1.50698 * 109.47055 * 175.00037 * 13 10 9 15 15 H 1.08004 * 119.99962 * 359.97438 * 14 13 10 16 16 C 1.37883 * 120.00150 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99799 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47056 * 90.00237 * 18 16 14 20 20 H 1.48502 * 109.47204 * 210.00221 * 18 16 14 21 21 H 1.48501 * 109.47177 * 330.00280 * 18 16 14 22 22 C 1.52996 * 109.47007 * 59.99635 * 6 4 3 23 23 C 1.53002 * 117.49888 * 231.25608 * 22 6 4 24 24 C 1.53000 * 117.50107 * 299.91370 * 22 6 4 25 25 H 1.08995 * 109.47243 * 59.99685 * 1 2 3 26 26 H 1.09006 * 109.47195 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47129 * 299.99886 * 1 2 3 28 28 H 1.09004 * 109.46817 * 239.99665 * 2 1 3 29 29 H 1.09004 * 109.47376 * 120.00148 * 2 1 3 30 30 H 1.00895 * 111.00002 * 31.03925 * 8 6 4 31 31 H 1.09003 * 109.46918 * 299.99693 * 9 8 6 32 32 H 1.08997 * 109.47213 * 59.99581 * 9 8 6 33 33 H 1.09006 * 109.46436 * 60.00069 * 12 10 9 34 34 H 1.08998 * 109.46893 * 179.97438 * 12 10 9 35 35 H 1.08990 * 109.46859 * 300.00475 * 12 10 9 36 36 H 1.09000 * 109.46889 * 294.99321 * 13 10 9 37 37 H 1.08998 * 109.47755 * 54.99926 * 13 10 9 38 38 H 0.96997 * 119.99909 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54951 * 85.58581 * 22 6 4 40 40 H 1.09000 * 117.49996 * 215.00804 * 23 22 6 41 41 H 1.08999 * 117.49664 * 0.02562 * 23 22 6 42 42 H 1.09008 * 117.49673 * 359.97438 * 24 22 6 43 43 H 1.08999 * 117.49959 * 144.99502 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 -0.8895 8 7 5.3878 2.8604 -0.0001 9 6 5.9785 4.0743 -0.5792 10 6 7.5040 3.9576 -0.5616 11 1 7.8409 3.7525 0.4545 12 6 7.9388 2.8163 -1.4832 13 6 8.1215 5.2700 -1.0484 14 6 9.6210 5.1993 -0.9153 15 1 10.0868 4.3077 -0.5224 16 6 10.3982 6.2730 -1.2953 17 7 9.8309 7.3589 -1.7733 18 14 12.2567 6.1857 -1.1296 19 1 12.8401 5.6386 -2.3808 20 1 12.7965 7.5475 -0.8859 21 1 12.6112 5.3015 0.0097 22 6 3.4498 3.6836 1.2499 23 6 2.8218 5.0649 1.0533 24 6 1.9426 3.8713 1.4347 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.7066 2.0357 -0.4862 31 1 5.6346 4.1911 -1.6070 32 1 5.6741 4.9416 0.0065 33 1 7.6019 3.0216 -2.4993 34 1 9.0256 2.7335 -1.4709 35 1 7.4988 1.8815 -1.1363 36 1 7.8568 5.4304 -2.0935 37 1 7.7419 6.0956 -0.4465 38 1 10.3776 8.1141 -2.0409 39 1 4.0510 3.5269 2.1455 40 1 3.0099 5.8170 1.8195 41 1 2.7438 5.4418 0.0335 42 1 1.2866 3.4635 0.6655 43 1 1.5523 3.8380 2.4518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262010888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:20 Heat of formation + Delta-G solvation = -80.230495 kcal Electronic energy + Delta-G solvation = -20883.689745 eV Core-core repulsion = 17736.195531 eV Total energy + Delta-G solvation = -3147.494214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77887 -38.04414 -36.83091 -36.13709 -33.54622 -32.07642 -31.75044 -28.05862 -26.66344 -24.90001 -23.61602 -22.43538 -22.24905 -21.89271 -20.13712 -19.09701 -17.81346 -16.81686 -16.75469 -16.17251 -15.86005 -15.09889 -14.55596 -14.38180 -13.96982 -13.84125 -13.61829 -13.17573 -12.89994 -12.65288 -12.29614 -12.19585 -11.96945 -11.76609 -11.60552 -11.46070 -11.32070 -10.94657 -10.83504 -10.75376 -10.74420 -10.43246 -10.31628 -10.13132 -9.94791 -9.70405 -9.14517 -8.94919 -8.32462 -8.30233 -5.95844 -3.96651 2.06899 2.42162 3.34836 3.41118 3.44982 3.72072 4.24089 4.50235 4.52596 4.63929 4.67914 4.73337 4.91569 4.97955 4.99321 5.17542 5.39256 5.40145 5.43662 5.47393 5.64038 5.66105 5.74416 5.80546 5.85963 6.08458 6.10031 6.15353 6.24846 6.27921 6.47469 6.58665 6.89302 7.13053 7.17628 7.25529 7.53826 7.67521 7.71854 7.87480 8.04531 8.48541 9.09611 9.66662 11.15734 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033229 B = 0.003454 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.431231 B = 8104.148051 C = 8699.014744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.352 6.352 4 C 0.466 3.534 5 O -0.500 6.500 6 C 0.128 3.872 7 H 0.080 0.920 8 N -0.672 5.672 9 C 0.066 3.934 10 C -0.083 4.083 11 H 0.067 0.933 12 C -0.136 4.136 13 C 0.029 3.971 14 C -0.512 4.512 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.141 4.141 23 C -0.171 4.171 24 C -0.174 4.174 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.353 0.647 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.014 0.986 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.037 -10.651 3.832 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.269 6.269 4 C 0.309 3.691 5 O -0.386 6.386 6 C 0.017 3.983 7 H 0.097 0.903 8 N -0.309 5.309 9 C -0.062 4.062 10 C -0.102 4.102 11 H 0.086 0.914 12 C -0.194 4.194 13 C -0.008 4.008 14 C -0.551 4.551 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.160 4.160 23 C -0.208 4.208 24 C -0.211 4.211 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.176 0.824 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.137 0.863 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.738 -10.604 4.398 22.833 hybrid contribution 0.948 -0.237 -0.921 1.343 sum -18.790 -10.841 3.477 21.970 Atomic orbital electron populations 1.21799 0.92621 1.02896 1.03531 1.23024 0.95327 0.80507 1.02591 1.86527 1.24359 1.32027 1.83988 1.23806 0.80669 0.92631 0.72044 1.90663 1.60301 1.42754 1.44880 1.20746 0.90634 0.88387 0.98581 0.90300 1.60575 1.01897 1.07192 1.61192 1.22263 0.96661 0.91062 0.96219 1.21227 0.90803 0.98393 0.99811 0.91423 1.21764 1.02294 0.96684 0.98646 1.19104 0.95170 0.90379 0.96197 1.21243 0.91811 1.00328 1.41671 0.92534 1.25015 0.98491 0.95536 0.95501 1.69963 1.35233 1.04774 1.43742 0.86630 0.85990 0.77201 0.78408 1.20781 1.21317 1.19873 1.22130 0.95809 0.99373 0.98675 1.23071 1.03483 0.91144 1.03057 1.23077 0.92702 1.02324 1.03001 0.91509 0.90344 0.91395 0.91365 0.91210 0.82367 0.95586 0.90780 0.94026 0.91730 0.94794 0.96739 0.96553 0.93119 0.86337 0.88376 0.88660 0.87865 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.35 -3.93 8.16 -39.26 -0.32 -4.25 16 4 C 0.47 6.29 7.26 36.01 0.26 6.55 16 5 O -0.50 -8.02 15.40 -18.76 -0.29 -8.31 16 6 C 0.13 1.69 2.76 -68.86 -0.19 1.50 16 7 H 0.08 0.98 7.56 -51.93 -0.39 0.59 16 8 N -0.67 -10.57 6.18 -107.95 -0.67 -11.24 16 9 C 0.07 1.14 4.94 -3.83 -0.02 1.13 16 10 C -0.08 -1.73 2.54 -90.62 -0.23 -1.96 16 11 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 12 C -0.14 -2.64 8.78 37.16 0.33 -2.31 16 13 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 14 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 15 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.14 -1.69 5.22 -90.62 -0.47 -2.16 16 23 C -0.17 -1.79 10.18 -26.69 -0.27 -2.06 16 24 C -0.17 -1.68 9.45 -26.70 -0.25 -1.93 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.35 5.78 5.70 -39.29 -0.22 5.56 16 31 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 32 H 0.07 1.29 8.01 -51.93 -0.42 0.88 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 35 H 0.03 0.58 6.68 -51.93 -0.35 0.23 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 42 H 0.10 0.97 6.85 -51.92 -0.36 0.62 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -30.90 350.72 -8.53 -39.43 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.51 Total: 2.13 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.75 Total: -13.60 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.07 Total: -37.52 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.61 Total: -12.56 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.90 -8.53 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262010888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.800 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds