Wall clock time and date at job start Mon Mar 30 2020 01:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45192 * 109.47105 * 2 1 4 4 C 1.34230 * 117.00299 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99391 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00536 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.46560 * 299.99882 * 6 4 3 8 8 N 1.46905 * 109.47095 * 179.97438 * 6 4 3 9 9 C 1.46898 * 110.99865 * 155.00005 * 8 6 4 10 10 C 1.52998 * 109.47003 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.47090 * 304.99487 * 10 9 8 12 12 C 1.53001 * 109.47331 * 64.99639 * 10 9 8 13 13 C 1.52999 * 109.46887 * 185.00094 * 10 9 8 14 14 C 1.50698 * 109.47055 * 175.00037 * 13 10 9 15 15 H 1.08004 * 119.99962 * 359.97438 * 14 13 10 16 16 C 1.37883 * 120.00150 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99799 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47056 * 90.00237 * 18 16 14 20 20 H 1.48502 * 109.47204 * 210.00221 * 18 16 14 21 21 H 1.48501 * 109.47177 * 330.00280 * 18 16 14 22 22 C 1.52996 * 109.47007 * 59.99635 * 6 4 3 23 23 C 1.53002 * 117.49888 * 231.25608 * 22 6 4 24 24 C 1.53000 * 117.50107 * 299.91370 * 22 6 4 25 25 H 1.08995 * 109.47243 * 59.99685 * 1 2 3 26 26 H 1.09006 * 109.47195 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47129 * 299.99886 * 1 2 3 28 28 H 1.09004 * 109.46817 * 239.99665 * 2 1 3 29 29 H 1.09004 * 109.47376 * 120.00148 * 2 1 3 30 30 H 1.00895 * 111.00002 * 31.03925 * 8 6 4 31 31 H 1.09003 * 109.46918 * 299.99693 * 9 8 6 32 32 H 1.08997 * 109.47213 * 59.99581 * 9 8 6 33 33 H 1.09006 * 109.46436 * 60.00069 * 12 10 9 34 34 H 1.08998 * 109.46893 * 179.97438 * 12 10 9 35 35 H 1.08990 * 109.46859 * 300.00475 * 12 10 9 36 36 H 1.09000 * 109.46889 * 294.99321 * 13 10 9 37 37 H 1.08998 * 109.47755 * 54.99926 * 13 10 9 38 38 H 0.96997 * 119.99909 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54951 * 85.58581 * 22 6 4 40 40 H 1.09000 * 117.49996 * 215.00804 * 23 22 6 41 41 H 1.08999 * 117.49664 * 0.02562 * 23 22 6 42 42 H 1.09008 * 117.49673 * 359.97438 * 24 22 6 43 43 H 1.08999 * 117.49959 * 144.99502 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 -0.8895 8 7 5.3878 2.8604 -0.0001 9 6 5.9785 4.0743 -0.5792 10 6 7.5040 3.9576 -0.5616 11 1 7.8409 3.7525 0.4545 12 6 7.9388 2.8163 -1.4832 13 6 8.1215 5.2700 -1.0484 14 6 9.6210 5.1993 -0.9153 15 1 10.0868 4.3077 -0.5224 16 6 10.3982 6.2730 -1.2953 17 7 9.8309 7.3589 -1.7733 18 14 12.2567 6.1857 -1.1296 19 1 12.8401 5.6386 -2.3808 20 1 12.7965 7.5475 -0.8859 21 1 12.6112 5.3015 0.0097 22 6 3.4498 3.6836 1.2499 23 6 2.8218 5.0649 1.0533 24 6 1.9426 3.8713 1.4347 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.7066 2.0357 -0.4862 31 1 5.6346 4.1911 -1.6070 32 1 5.6741 4.9416 0.0065 33 1 7.6019 3.0216 -2.4993 34 1 9.0256 2.7335 -1.4709 35 1 7.4988 1.8815 -1.1363 36 1 7.8568 5.4304 -2.0935 37 1 7.7419 6.0956 -0.4465 38 1 10.3776 8.1141 -2.0409 39 1 4.0510 3.5269 2.1455 40 1 3.0099 5.8170 1.8195 41 1 2.7438 5.4418 0.0335 42 1 1.2866 3.4635 0.6655 43 1 1.5523 3.8380 2.4518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262010888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:19 Heat of formation + Delta-G solvation = -97.775002 kcal Electronic energy + Delta-G solvation = -20884.450532 eV Core-core repulsion = 17736.195531 eV Total energy + Delta-G solvation = -3148.255000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79753 -39.12077 -37.83472 -37.54076 -35.23466 -33.69351 -32.61657 -29.53903 -28.37495 -26.47635 -24.50616 -24.00862 -23.15538 -22.80039 -21.14389 -20.75299 -18.92662 -18.43612 -17.76518 -17.67840 -16.86845 -16.54258 -16.09998 -15.61677 -15.16297 -14.95369 -14.77299 -14.33366 -14.25766 -14.00446 -13.58479 -13.41508 -13.23514 -12.97718 -12.75103 -12.71002 -12.57089 -12.50835 -12.26715 -12.21390 -12.01271 -11.84901 -11.53991 -11.52014 -11.24256 -11.09966 -10.98750 -10.79385 -10.51796 -9.57515 -8.16317 -6.24720 1.02607 1.40928 1.41627 1.49305 1.52885 2.43031 2.78964 3.17232 3.17878 3.61901 3.73651 3.95422 4.01966 4.07503 4.09192 4.17788 4.21967 4.30441 4.36233 4.46172 4.55504 4.73093 4.81025 4.85528 4.88363 4.94678 5.02743 5.06382 5.13084 5.20775 5.26828 5.34005 5.36525 5.40993 5.46732 5.55844 5.77754 5.88847 5.92466 6.25728 6.32680 6.64334 6.90728 7.43173 8.95691 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033229 B = 0.003454 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.431231 B = 8104.148051 C = 8699.014744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.346 6.346 4 C 0.471 3.529 5 O -0.530 6.530 6 C 0.128 3.872 7 H 0.091 0.909 8 N -0.676 5.676 9 C 0.081 3.919 10 C -0.076 4.076 11 H 0.056 0.944 12 C -0.129 4.129 13 C 0.036 3.964 14 C -0.529 4.529 15 H 0.059 0.941 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.959 3.041 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.265 1.265 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.350 0.650 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.058 0.942 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.262 0.738 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.087 -11.530 4.150 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.262 6.262 4 C 0.315 3.685 5 O -0.419 6.419 6 C 0.017 3.983 7 H 0.108 0.892 8 N -0.313 5.313 9 C -0.047 4.047 10 C -0.094 4.094 11 H 0.075 0.925 12 C -0.186 4.186 13 C -0.002 4.002 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.784 3.216 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.190 1.190 22 C -0.179 4.179 23 C -0.207 4.207 24 C -0.189 4.189 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.172 0.828 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.818 -11.491 4.723 24.244 hybrid contribution 1.188 0.014 -1.009 1.559 sum -19.630 -11.477 3.714 23.041 Atomic orbital electron populations 1.21814 0.90066 1.04353 1.03886 1.23326 0.97265 0.79235 1.02420 1.86519 1.22840 1.33558 1.83305 1.23784 0.81280 0.92192 0.71260 1.90650 1.61131 1.43609 1.46530 1.20781 0.88954 0.88839 0.99743 0.89179 1.60480 1.03820 1.06090 1.60861 1.21949 0.94315 0.91868 0.96612 1.21018 0.93030 0.96260 0.99137 0.92501 1.21668 1.01277 0.97185 0.98504 1.18970 0.94561 0.92193 0.94453 1.21638 0.93253 1.00451 1.41417 0.92321 1.25907 1.03603 0.95153 0.95122 1.70087 1.37144 1.05531 1.44691 0.85539 0.79881 0.77420 0.78776 1.19929 1.20840 1.18985 1.22054 0.97515 1.00734 0.97629 1.23143 1.03246 0.90870 1.03452 1.23132 0.91056 1.00744 1.03991 0.91188 0.88341 0.90954 0.91558 0.91496 0.82751 0.95130 0.91018 0.93810 0.93377 0.92358 0.98923 0.98992 0.92927 0.87661 0.87951 0.88409 0.87235 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 10.29 71.98 0.74 -0.63 16 2 C 0.05 0.83 6.19 71.98 0.45 1.27 16 3 O -0.35 -7.16 8.16 -51.42 -0.42 -7.57 16 4 C 0.47 12.24 7.26 71.24 0.52 12.75 16 5 O -0.53 -16.74 15.40 21.94 0.34 -16.41 16 6 C 0.13 3.26 2.76 44.17 0.12 3.38 16 7 H 0.09 2.12 7.56 -2.39 -0.02 2.10 16 8 N -0.68 -20.92 6.18 -495.46 -3.06 -23.99 16 9 C 0.08 2.80 4.94 86.30 0.43 3.23 16 10 C -0.08 -3.15 2.54 -10.79 -0.03 -3.18 16 11 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 12 C -0.13 -4.94 8.78 71.98 0.63 -4.31 16 13 C 0.04 1.88 4.45 29.85 0.13 2.02 16 14 C -0.53 -30.20 8.41 25.60 0.22 -29.98 16 15 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 16 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 17 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 18 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C -0.16 -3.66 5.22 -10.79 -0.06 -3.72 16 23 C -0.17 -3.31 10.18 30.62 0.31 -3.00 16 24 C -0.15 -2.61 9.45 30.62 0.29 -2.32 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 29 H 0.07 1.13 8.13 -2.38 -0.02 1.11 16 30 H 0.35 11.21 5.70 -89.70 -0.51 10.70 16 31 H 0.03 1.03 8.06 -2.39 -0.02 1.01 16 32 H 0.07 2.51 8.01 -2.39 -0.02 2.49 16 33 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.98 6.95 -2.39 -0.02 1.96 16 35 H 0.06 1.94 6.68 -2.39 -0.02 1.92 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.10 1.86 8.05 -2.39 -0.02 1.84 16 42 H 0.11 1.77 6.85 -2.38 -0.02 1.75 16 43 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -66.40 350.72 3.84 -62.56 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.46 Total: 19.31 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 4.21 Total: -24.06 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.78 Total: -80.76 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.08 Total: -23.98 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.40 3.84 -62.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262010888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.215 kcal (2) G-P(sol) polarization free energy of solvation -66.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds