Wall clock time and date at job start Mon Mar 30 2020 01:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 8 8 N 1.46896 * 109.47652 * 179.72202 * 6 4 3 9 9 C 1.46900 * 111.00052 * 205.00227 * 8 6 4 10 10 C 1.53002 * 109.46831 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47115 * 304.99610 * 10 9 8 12 12 C 1.52999 * 109.47476 * 64.99665 * 10 9 8 13 13 C 1.53000 * 109.46982 * 184.99855 * 10 9 8 14 14 C 1.50703 * 109.47231 * 175.00092 * 13 10 9 15 15 H 1.07994 * 119.99773 * 359.97438 * 14 13 10 16 16 C 1.37874 * 119.99665 * 179.97438 * 14 13 10 17 17 N 1.31520 * 119.99772 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00488 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47222 * 89.99828 * 18 16 14 20 20 H 1.48504 * 109.47302 * 209.99993 * 18 16 14 21 21 H 1.48498 * 109.46892 * 330.00072 * 18 16 14 22 22 C 1.53002 * 109.46796 * 299.72392 * 6 4 3 23 23 C 1.52996 * 117.49995 * 128.74681 * 22 6 4 24 24 C 1.52995 * 117.50107 * 60.08381 * 22 6 4 25 25 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 26 26 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 29 29 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 30 30 H 1.00907 * 110.99619 * 328.94912 * 8 6 4 31 31 H 1.09002 * 109.46994 * 299.99082 * 9 8 6 32 32 H 1.08996 * 109.47622 * 59.99840 * 9 8 6 33 33 H 1.08996 * 109.46915 * 300.00240 * 12 10 9 34 34 H 1.09002 * 109.46993 * 59.99871 * 12 10 9 35 35 H 1.08996 * 109.47421 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.46948 * 294.99941 * 13 10 9 37 37 H 1.08997 * 109.47643 * 54.99492 * 13 10 9 38 38 H 0.96997 * 120.00208 * 180.02562 * 17 16 14 39 39 H 1.09001 * 115.54464 * 274.41294 * 22 6 4 40 40 H 1.08992 * 117.50131 * 359.97438 * 23 22 6 41 41 H 1.09001 * 117.49858 * 145.01649 * 23 22 6 42 42 H 1.09004 * 117.49724 * 214.97555 * 24 22 6 43 43 H 1.08990 * 117.49997 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5816 3.4669 0.8960 8 7 5.3876 2.8606 0.0105 9 6 5.9763 4.0725 0.5958 10 6 7.5018 3.9552 0.5840 11 1 7.7997 3.0382 1.0924 12 6 7.9996 3.9213 -0.8624 13 6 8.1114 5.1591 1.3050 14 6 9.6051 4.9836 1.4014 15 1 10.0727 4.1013 0.9899 16 6 10.3745 5.9493 2.0149 17 7 11.6780 5.7958 2.0994 18 14 9.5657 7.4756 2.7260 19 1 9.1946 7.2251 4.1418 20 1 10.5143 8.6161 2.6571 21 1 8.3453 7.7988 1.9442 22 6 3.4534 3.6881 -1.2429 23 6 2.8249 5.0686 -1.0434 24 6 1.9468 3.8764 -1.4316 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 5.7048 2.0342 0.4950 31 1 5.6739 4.9418 0.0119 32 1 5.6290 4.1858 1.6227 33 1 7.5653 3.0636 -1.3760 34 1 7.7017 4.8383 -1.3708 35 1 9.0863 3.8373 -0.8708 36 1 7.8877 6.0684 0.7470 37 1 7.6890 5.2348 2.3070 38 1 12.2193 6.4750 2.5313 39 1 4.0573 3.5345 -2.1373 40 1 2.7439 5.4420 -0.0226 41 1 3.0149 5.8233 -1.8066 42 1 1.5596 3.8472 -2.4501 43 1 1.2885 3.4651 -0.6665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262010889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:21 Heat of formation + Delta-G solvation = -95.501389 kcal Electronic energy + Delta-G solvation = -20939.557385 eV Core-core repulsion = 17791.400976 eV Total energy + Delta-G solvation = -3148.156409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78273 -39.09049 -37.81506 -37.53422 -35.19550 -33.82893 -32.63117 -29.90177 -28.54728 -26.20848 -24.40211 -23.79644 -23.13547 -22.78850 -21.11805 -20.83471 -19.06965 -18.67926 -17.71700 -17.59691 -16.85562 -16.31087 -16.17903 -15.46542 -15.26317 -15.15104 -14.71450 -14.61834 -14.20394 -14.05473 -13.61799 -13.50370 -13.07279 -12.96912 -12.84570 -12.72387 -12.51532 -12.41022 -12.22755 -12.09225 -11.89979 -11.78932 -11.54321 -11.46415 -11.32736 -11.16360 -11.02554 -10.80816 -10.71974 -9.52414 -8.24476 -6.27248 1.04536 1.37486 1.39723 1.50420 1.51674 2.39548 2.80174 3.10788 3.18473 3.63468 3.74985 3.97258 4.01549 4.08731 4.09613 4.11321 4.26043 4.30913 4.36050 4.47698 4.58439 4.80653 4.85247 4.89857 4.90302 4.94041 4.94599 5.08470 5.11524 5.13354 5.27780 5.35763 5.39589 5.40801 5.41771 5.55459 5.69820 5.73419 5.91861 6.23678 6.36642 6.65604 6.80711 7.36197 8.92569 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029057 B = 0.003661 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.407525 B = 7646.369495 C = 8017.833315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.469 3.531 5 O -0.532 6.532 6 C 0.130 3.870 7 H 0.094 0.906 8 N -0.675 5.675 9 C 0.078 3.922 10 C -0.071 4.071 11 H 0.045 0.955 12 C -0.115 4.115 13 C -0.005 4.005 14 C -0.520 4.520 15 H 0.031 0.969 16 C -0.001 4.001 17 N -0.956 5.956 18 Si 0.951 3.049 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.242 1.242 22 C -0.158 4.158 23 C -0.166 4.166 24 C -0.157 4.157 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.348 0.652 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.025 0.975 36 H 0.023 0.977 37 H 0.017 0.983 38 H 0.264 0.736 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.000 -5.680 -5.378 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.313 3.687 5 O -0.421 6.421 6 C 0.019 3.981 7 H 0.111 0.889 8 N -0.310 5.310 9 C -0.050 4.050 10 C -0.090 4.090 11 H 0.063 0.937 12 C -0.173 4.173 13 C -0.042 4.042 14 C -0.558 4.558 15 H 0.050 0.950 16 C -0.197 4.197 17 N -0.598 5.598 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.213 1.213 21 H -0.165 1.165 22 C -0.177 4.177 23 C -0.203 4.203 24 C -0.195 4.195 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.622 -5.720 -5.962 28.831 hybrid contribution 0.712 0.035 1.339 1.517 sum -26.911 -5.685 -4.623 27.890 Atomic orbital electron populations 1.21808 0.90071 1.04320 1.03899 1.23305 0.97258 0.79319 1.02331 1.86519 1.22964 1.33430 1.83343 1.23883 0.81215 0.92387 0.71233 1.90664 1.61144 1.43756 1.46527 1.20781 0.88879 0.88569 0.99873 0.88891 1.60422 1.03868 1.05956 1.60729 1.22022 0.93555 0.92405 0.97043 1.20889 0.93319 0.98029 0.96744 0.93666 1.21487 0.99170 1.01054 0.95540 1.19549 0.93748 0.95329 0.95618 1.21466 0.92654 1.05521 1.36147 0.95044 1.26047 0.95200 1.02084 0.96373 1.70087 1.06594 1.36799 1.46288 0.85653 0.79233 0.78294 0.79424 1.19358 1.21329 1.16520 1.22041 0.97345 1.00727 0.97626 1.23150 1.02853 0.90741 1.03547 1.23124 0.91278 1.01206 1.03850 0.91162 0.90920 0.88439 0.91591 0.91675 0.83149 0.89783 0.94623 0.92138 0.93244 0.95536 0.95835 0.96491 0.92713 0.87602 0.88155 0.87793 0.87633 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 10.29 71.98 0.74 -0.56 16 2 C 0.05 0.81 6.19 71.98 0.45 1.26 16 3 O -0.35 -6.80 8.17 -51.41 -0.42 -7.22 16 4 C 0.47 11.56 7.26 71.23 0.52 12.07 16 5 O -0.53 -16.46 15.40 21.94 0.34 -16.12 16 6 C 0.13 2.97 2.76 44.17 0.12 3.10 16 7 H 0.09 1.89 7.56 -2.39 -0.02 1.87 16 8 N -0.67 -19.04 5.64 -495.46 -2.79 -21.83 16 9 C 0.08 2.36 4.87 86.30 0.42 2.78 16 10 C -0.07 -2.78 2.48 -10.79 -0.03 -2.80 16 11 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 12 C -0.12 -4.48 8.89 71.98 0.64 -3.85 16 13 C 0.00 -0.21 3.52 29.85 0.10 -0.11 16 14 C -0.52 -30.23 8.96 25.60 0.23 -30.00 16 15 H 0.03 2.03 7.30 -2.91 -0.02 2.01 16 16 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 17 N -0.96 -61.17 13.96 21.45 0.30 -60.87 16 18 Si 0.95 44.47 27.47 68.60 1.88 46.35 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 22 C -0.16 -3.16 5.22 -10.80 -0.06 -3.22 16 23 C -0.17 -2.67 10.18 30.62 0.31 -2.35 16 24 C -0.16 -2.37 9.46 30.62 0.29 -2.08 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.06 1.07 8.13 -2.38 -0.02 1.05 16 30 H 0.35 10.66 7.45 -89.69 -0.67 10.00 16 31 H 0.08 2.40 8.01 -2.39 -0.02 2.38 16 32 H 0.04 1.02 8.05 -2.39 -0.02 1.00 16 33 H 0.06 2.15 7.75 -2.39 -0.02 2.13 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.03 1.17 6.95 -2.39 -0.02 1.15 16 36 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 37 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 38 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.10 1.51 8.05 -2.39 -0.02 1.49 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.11 1.56 6.85 -2.39 -0.02 1.54 16 Total: -1.00 -69.34 349.39 3.76 -65.58 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.25 Total: 19.49 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 4.20 Total: -25.38 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.50 Total: -82.71 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.08 Total: -23.35 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -69.34 3.76 -65.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262010889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.920 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds