Wall clock time and date at job start Mon Mar 30 2020 01:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.46932 * 2 1 4 4 C 1.34229 * 116.99843 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99407 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47629 * 60.00142 * 6 4 3 8 8 N 1.46904 * 109.46851 * 179.97438 * 6 4 3 9 9 C 1.46899 * 111.00029 * 204.99994 * 8 6 4 10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.47017 * 54.99767 * 10 9 8 12 12 C 1.53001 * 109.47242 * 295.00236 * 10 9 8 13 13 C 1.52994 * 109.47404 * 174.99689 * 10 9 8 14 14 C 1.50701 * 109.47248 * 184.99754 * 13 10 9 15 15 H 1.07997 * 120.00120 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99825 * 179.97438 * 14 13 10 17 17 N 1.31511 * 119.99974 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00091 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47323 * 89.99961 * 18 16 14 20 20 H 1.48504 * 109.46935 * 209.99740 * 18 16 14 21 21 H 1.48493 * 109.47102 * 329.99583 * 18 16 14 22 22 C 1.52997 * 109.47156 * 299.99487 * 6 4 3 23 23 C 1.52998 * 117.49816 * 128.75421 * 22 6 4 24 24 C 1.53000 * 117.49903 * 60.09139 * 22 6 4 25 25 H 1.08993 * 109.46749 * 299.99540 * 1 2 3 26 26 H 1.08999 * 109.47153 * 60.00512 * 1 2 3 27 27 H 1.09004 * 109.46677 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46803 * 240.00487 * 2 1 3 29 29 H 1.08996 * 109.47452 * 119.99910 * 2 1 3 30 30 H 1.00908 * 110.99583 * 328.94906 * 8 6 4 31 31 H 1.09002 * 109.47043 * 299.99792 * 9 8 6 32 32 H 1.09001 * 109.47354 * 59.99854 * 9 8 6 33 33 H 1.09008 * 109.46731 * 299.99706 * 12 10 9 34 34 H 1.08998 * 109.47430 * 59.99652 * 12 10 9 35 35 H 1.08996 * 109.47271 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.47698 * 305.00111 * 13 10 9 37 37 H 1.09009 * 109.47010 * 65.00116 * 13 10 9 38 38 H 0.97003 * 120.00629 * 180.02562 * 17 16 14 39 39 H 1.09011 * 115.55234 * 274.41886 * 22 6 4 40 40 H 1.08996 * 117.50119 * 359.97438 * 23 22 6 41 41 H 1.09000 * 117.50134 * 145.02162 * 23 22 6 42 42 H 1.09000 * 117.49909 * 214.97598 * 24 22 6 43 43 H 1.08994 * 117.49995 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4692 0.8904 8 7 5.3876 2.8607 -0.0001 9 6 5.9784 4.0742 0.5799 10 6 7.5037 3.9571 0.5631 11 1 7.8413 3.7522 -0.4529 12 6 7.9378 2.8153 1.4845 13 6 8.1214 5.2690 1.0509 14 6 9.6210 5.1980 0.9187 15 1 10.0868 4.3064 0.5257 16 6 10.3981 6.2717 1.2986 17 7 11.7067 6.2099 1.1828 18 14 9.5924 7.8140 1.9778 19 1 9.4688 7.6993 3.4532 20 1 10.4251 8.9967 1.6413 21 1 8.2428 7.9723 1.3788 22 6 3.4485 3.6851 -1.2486 23 6 2.8207 5.0662 -1.0499 24 6 1.9411 3.8729 -1.4319 25 1 -0.3632 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.7065 2.0356 0.4854 31 1 5.6738 4.9420 -0.0051 32 1 5.6345 4.1901 1.6078 33 1 7.6003 3.0201 2.5006 34 1 7.4978 1.8806 1.1370 35 1 9.0245 2.7322 1.4729 36 1 7.7424 6.0950 0.4492 37 1 7.8560 5.4291 2.0960 38 1 12.2535 6.9651 1.4504 39 1 4.0489 3.5295 -2.1450 40 1 2.7436 5.4420 -0.0297 41 1 3.0077 5.8189 -1.8157 42 1 1.5500 3.8412 -2.4488 43 1 1.2858 3.4635 -0.6631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262010890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:23 Heat of formation + Delta-G solvation = -76.440778 kcal Electronic energy + Delta-G solvation = -20941.896504 eV Core-core repulsion = 17794.566625 eV Total energy + Delta-G solvation = -3147.329879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82792 -38.11742 -36.88345 -36.25476 -33.59495 -32.10709 -31.82383 -28.36992 -27.04455 -24.94068 -23.64129 -22.46030 -22.05780 -21.86599 -20.19514 -19.12278 -17.89080 -16.97755 -16.84638 -16.44750 -15.92052 -15.17776 -14.65678 -14.28329 -13.98932 -13.84489 -13.67088 -13.26131 -12.99605 -12.81159 -12.43291 -12.25383 -12.06477 -11.89640 -11.68851 -11.63272 -11.46948 -11.04054 -10.96607 -10.79018 -10.72471 -10.51562 -10.31482 -10.03213 -9.80633 -9.70974 -9.43802 -9.03902 -8.49734 -8.40122 -5.99607 -3.96528 2.02347 2.37367 3.32711 3.40284 3.43651 3.65371 4.16808 4.47337 4.48677 4.60234 4.62745 4.68364 4.84763 4.91813 4.95644 5.10296 5.33749 5.35355 5.37102 5.44111 5.57954 5.62273 5.62553 5.68341 5.78978 5.96961 6.02969 6.08516 6.14638 6.23214 6.37753 6.48155 6.74004 6.97221 7.06515 7.12629 7.33447 7.42925 7.53671 7.62392 7.84684 8.59954 9.06476 9.63091 11.13875 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030149 B = 0.003710 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.508173 B = 7544.394227 C = 8158.794435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.353 6.353 4 C 0.466 3.534 5 O -0.498 6.498 6 C 0.128 3.872 7 H 0.079 0.921 8 N -0.671 5.671 9 C 0.063 3.937 10 C -0.075 4.075 11 H 0.074 0.926 12 C -0.138 4.138 13 C -0.007 4.007 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.141 4.141 23 C -0.172 4.172 24 C -0.173 4.173 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.355 0.645 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.016 0.984 37 H 0.009 0.991 38 H 0.262 0.738 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.551 -8.202 -2.547 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.269 6.269 4 C 0.308 3.692 5 O -0.385 6.385 6 C 0.017 3.983 7 H 0.097 0.903 8 N -0.308 5.308 9 C -0.065 4.065 10 C -0.094 4.094 11 H 0.092 0.908 12 C -0.196 4.196 13 C -0.045 4.045 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.160 4.160 23 C -0.209 4.209 24 C -0.210 4.210 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.178 0.822 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.130 -8.228 -3.147 25.688 hybrid contribution -0.360 0.574 1.347 1.507 sum -24.489 -7.654 -1.800 25.721 Atomic orbital electron populations 1.21799 0.92606 1.02929 1.03516 1.23033 0.95333 0.80442 1.02634 1.86525 1.24318 1.32093 1.83990 1.23764 0.80710 0.92584 0.72130 1.90667 1.60281 1.42726 1.44780 1.20739 0.90544 0.88497 0.98567 0.90327 1.60541 1.01971 1.07090 1.61171 1.22287 0.96645 0.91329 0.96211 1.21031 0.90572 0.97403 1.00350 0.90789 1.21776 1.02873 0.96598 0.98326 1.19597 0.96958 0.92481 0.95494 1.21137 0.89298 1.02362 1.42250 0.90781 1.25031 0.94692 0.98463 0.95424 1.69914 1.04115 1.31592 1.48845 0.86803 0.79862 0.83199 0.79543 1.20468 1.21508 1.19031 1.22139 0.95884 0.99265 0.98722 1.23070 1.03644 0.91187 1.02967 1.23077 0.92687 1.02192 1.03069 0.91523 0.91393 0.90312 0.91168 0.91337 0.82186 0.90800 0.95588 0.94081 0.94535 0.91185 0.96583 0.97239 0.92843 0.86262 0.88739 0.88388 0.88750 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.35 -3.78 8.16 -39.25 -0.32 -4.11 16 4 C 0.47 6.07 7.26 36.01 0.26 6.33 16 5 O -0.50 -7.81 15.39 -18.74 -0.29 -8.10 16 6 C 0.13 1.61 2.76 -68.86 -0.19 1.42 16 7 H 0.08 0.92 7.56 -51.93 -0.39 0.53 16 8 N -0.67 -10.10 6.19 -107.95 -0.67 -10.77 16 9 C 0.06 1.03 4.94 -3.83 -0.02 1.01 16 10 C -0.07 -1.48 2.54 -90.62 -0.23 -1.71 16 11 H 0.07 1.56 8.14 -51.92 -0.42 1.14 16 12 C -0.14 -2.62 8.77 37.16 0.33 -2.30 16 13 C -0.01 -0.18 3.52 -27.89 -0.10 -0.27 16 14 C -0.51 -14.52 8.96 -34.44 -0.31 -14.83 16 15 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 18 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C -0.14 -1.60 5.22 -90.62 -0.47 -2.08 16 23 C -0.17 -1.68 10.18 -26.69 -0.27 -1.96 16 24 C -0.17 -1.58 9.45 -26.69 -0.25 -1.84 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 29 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.35 5.59 5.70 -39.29 -0.22 5.37 16 31 H 0.07 1.19 8.01 -51.93 -0.42 0.77 16 32 H 0.03 0.41 8.05 -51.93 -0.42 -0.01 16 33 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.04 0.61 6.68 -51.93 -0.35 0.26 16 35 H 0.07 1.48 6.95 -51.93 -0.36 1.12 16 36 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 37 H 0.01 0.22 7.57 -51.92 -0.39 -0.17 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.12 1.48 8.14 -51.92 -0.42 1.06 16 40 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.92 6.85 -51.93 -0.36 0.57 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -31.43 347.12 -8.16 -39.59 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.48 Total: 2.52 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.74 Total: -14.16 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.11 Total: -38.11 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.61 Total: -12.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.43 -8.16 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262010890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.848 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds