Wall clock time and date at job start Mon Mar 30 2020 01:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.46932 * 2 1 4 4 C 1.34229 * 116.99843 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99407 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47629 * 60.00142 * 6 4 3 8 8 N 1.46904 * 109.46851 * 179.97438 * 6 4 3 9 9 C 1.46899 * 111.00029 * 204.99994 * 8 6 4 10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.47017 * 54.99767 * 10 9 8 12 12 C 1.53001 * 109.47242 * 295.00236 * 10 9 8 13 13 C 1.52994 * 109.47404 * 174.99689 * 10 9 8 14 14 C 1.50701 * 109.47248 * 184.99754 * 13 10 9 15 15 H 1.07997 * 120.00120 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99825 * 179.97438 * 14 13 10 17 17 N 1.31511 * 119.99974 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00091 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47323 * 89.99961 * 18 16 14 20 20 H 1.48504 * 109.46935 * 209.99740 * 18 16 14 21 21 H 1.48493 * 109.47102 * 329.99583 * 18 16 14 22 22 C 1.52997 * 109.47156 * 299.99487 * 6 4 3 23 23 C 1.52998 * 117.49816 * 128.75421 * 22 6 4 24 24 C 1.53000 * 117.49903 * 60.09139 * 22 6 4 25 25 H 1.08993 * 109.46749 * 299.99540 * 1 2 3 26 26 H 1.08999 * 109.47153 * 60.00512 * 1 2 3 27 27 H 1.09004 * 109.46677 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46803 * 240.00487 * 2 1 3 29 29 H 1.08996 * 109.47452 * 119.99910 * 2 1 3 30 30 H 1.00908 * 110.99583 * 328.94906 * 8 6 4 31 31 H 1.09002 * 109.47043 * 299.99792 * 9 8 6 32 32 H 1.09001 * 109.47354 * 59.99854 * 9 8 6 33 33 H 1.09008 * 109.46731 * 299.99706 * 12 10 9 34 34 H 1.08998 * 109.47430 * 59.99652 * 12 10 9 35 35 H 1.08996 * 109.47271 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.47698 * 305.00111 * 13 10 9 37 37 H 1.09009 * 109.47010 * 65.00116 * 13 10 9 38 38 H 0.97003 * 120.00629 * 180.02562 * 17 16 14 39 39 H 1.09011 * 115.55234 * 274.41886 * 22 6 4 40 40 H 1.08996 * 117.50119 * 359.97438 * 23 22 6 41 41 H 1.09000 * 117.50134 * 145.02162 * 23 22 6 42 42 H 1.09000 * 117.49909 * 214.97598 * 24 22 6 43 43 H 1.08994 * 117.49995 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4692 0.8904 8 7 5.3876 2.8607 -0.0001 9 6 5.9784 4.0742 0.5799 10 6 7.5037 3.9571 0.5631 11 1 7.8413 3.7522 -0.4529 12 6 7.9378 2.8153 1.4845 13 6 8.1214 5.2690 1.0509 14 6 9.6210 5.1980 0.9187 15 1 10.0868 4.3064 0.5257 16 6 10.3981 6.2717 1.2986 17 7 11.7067 6.2099 1.1828 18 14 9.5924 7.8140 1.9778 19 1 9.4688 7.6993 3.4532 20 1 10.4251 8.9967 1.6413 21 1 8.2428 7.9723 1.3788 22 6 3.4485 3.6851 -1.2486 23 6 2.8207 5.0662 -1.0499 24 6 1.9411 3.8729 -1.4319 25 1 -0.3632 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.7065 2.0356 0.4854 31 1 5.6738 4.9420 -0.0051 32 1 5.6345 4.1901 1.6078 33 1 7.6003 3.0201 2.5006 34 1 7.4978 1.8806 1.1370 35 1 9.0245 2.7322 1.4729 36 1 7.7424 6.0950 0.4492 37 1 7.8560 5.4291 2.0960 38 1 12.2535 6.9651 1.4504 39 1 4.0489 3.5295 -2.1450 40 1 2.7436 5.4420 -0.0297 41 1 3.0077 5.8189 -1.8157 42 1 1.5500 3.8412 -2.4488 43 1 1.2858 3.4635 -0.6631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262010890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:23 Heat of formation + Delta-G solvation = -95.388533 kcal Electronic energy + Delta-G solvation = -20942.718140 eV Core-core repulsion = 17794.566625 eV Total energy + Delta-G solvation = -3148.151515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.79422 -39.12592 -37.83749 -37.57152 -35.19290 -33.80582 -32.62812 -29.92878 -28.54018 -26.39703 -24.41819 -23.73354 -23.14029 -22.79055 -21.13536 -20.72731 -19.10901 -18.68166 -17.76629 -17.67898 -16.84636 -16.48970 -16.03053 -15.56513 -15.26862 -14.99151 -14.75831 -14.60885 -14.26267 -14.03565 -13.61460 -13.48619 -13.35903 -12.98018 -12.83128 -12.68502 -12.52778 -12.47829 -12.23457 -12.11041 -11.90912 -11.71014 -11.54262 -11.49379 -11.32600 -11.17934 -11.03008 -10.81619 -10.71967 -9.55026 -8.24045 -6.26790 1.03443 1.37998 1.40241 1.50089 1.52159 2.40008 2.79474 3.11279 3.17990 3.62743 3.73824 3.96250 4.01637 4.07991 4.08930 4.16927 4.18922 4.30058 4.35838 4.40524 4.56198 4.72040 4.80389 4.83275 4.89029 4.94350 4.99301 5.04284 5.07738 5.13274 5.25318 5.28689 5.35009 5.37299 5.41262 5.53834 5.66891 5.73700 5.93111 6.25144 6.36937 6.64892 6.81062 7.36637 8.92955 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030149 B = 0.003710 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.508173 B = 7544.394227 C = 8158.794435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.346 6.346 4 C 0.470 3.530 5 O -0.532 6.532 6 C 0.129 3.871 7 H 0.096 0.904 8 N -0.681 5.681 9 C 0.078 3.922 10 C -0.071 4.071 11 H 0.052 0.948 12 C -0.132 4.132 13 C -0.004 4.004 14 C -0.520 4.520 15 H 0.031 0.969 16 C -0.001 4.001 17 N -0.956 5.956 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.242 1.242 22 C -0.161 4.161 23 C -0.166 4.166 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.350 0.650 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.264 0.736 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.072 -7.203 -1.923 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.262 6.262 4 C 0.313 3.687 5 O -0.421 6.421 6 C 0.018 3.982 7 H 0.113 0.887 8 N -0.317 5.317 9 C -0.050 4.050 10 C -0.090 4.090 11 H 0.071 0.929 12 C -0.189 4.189 13 C -0.041 4.041 14 C -0.558 4.558 15 H 0.050 0.950 16 C -0.197 4.197 17 N -0.598 5.598 18 Si 0.774 3.226 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.165 1.165 22 C -0.180 4.180 23 C -0.203 4.203 24 C -0.193 4.193 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.172 0.828 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -27.696 -7.238 -2.532 28.738 hybrid contribution 0.744 0.136 1.093 1.329 sum -26.952 -7.102 -1.439 27.909 Atomic orbital electron populations 1.21811 0.90060 1.04328 1.03902 1.23315 0.97265 0.79295 1.02360 1.86520 1.22896 1.33462 1.83321 1.23863 0.81251 0.92343 0.71246 1.90656 1.61150 1.43733 1.46535 1.20782 0.88841 0.88661 0.99868 0.88702 1.60454 1.03901 1.06253 1.61103 1.22013 0.93600 0.92109 0.97313 1.20885 0.93379 0.95739 0.99011 0.92937 1.21683 1.00724 0.97503 0.98989 1.19534 0.93745 0.94654 0.96209 1.21466 0.92129 1.00872 1.41319 0.95022 1.26043 0.95175 1.02524 0.95944 1.70083 1.06063 1.32980 1.50637 0.85653 0.79673 0.78070 0.79213 1.19320 1.21370 1.16531 1.22052 0.97427 1.00884 0.97644 1.23156 1.02854 0.90703 1.03610 1.23128 0.91151 1.01093 1.03913 0.91111 0.90965 0.88425 0.91628 0.91575 0.82791 0.90186 0.94141 0.92914 0.92523 0.94517 0.96026 0.96211 0.92717 0.87834 0.88014 0.87904 0.87650 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 10.29 71.98 0.74 -0.54 16 2 C 0.05 0.80 6.19 71.98 0.45 1.24 16 3 O -0.35 -6.78 8.16 -51.41 -0.42 -7.20 16 4 C 0.47 11.62 7.26 71.24 0.52 12.13 16 5 O -0.53 -16.44 15.39 21.98 0.34 -16.10 16 6 C 0.13 3.02 2.76 44.17 0.12 3.14 16 7 H 0.10 1.93 7.56 -2.39 -0.02 1.91 16 8 N -0.68 -19.66 6.19 -495.45 -3.06 -22.73 16 9 C 0.08 2.38 4.94 86.30 0.43 2.81 16 10 C -0.07 -2.80 2.54 -10.80 -0.03 -2.83 16 11 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 12 C -0.13 -5.00 8.77 71.98 0.63 -4.37 16 13 C 0.00 -0.16 3.52 29.85 0.10 -0.06 16 14 C -0.52 -30.18 8.96 25.60 0.23 -29.95 16 15 H 0.03 2.04 7.30 -2.91 -0.02 2.02 16 16 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 17 N -0.96 -61.10 13.96 21.45 0.30 -60.80 16 18 Si 0.95 44.40 27.47 68.60 1.88 46.29 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 22 C -0.16 -3.35 5.22 -10.80 -0.06 -3.40 16 23 C -0.17 -2.78 10.18 30.62 0.31 -2.47 16 24 C -0.16 -2.41 9.45 30.62 0.29 -2.12 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 28 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 29 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 30 H 0.35 10.71 5.70 -89.69 -0.51 10.20 16 31 H 0.08 2.37 8.01 -2.39 -0.02 2.35 16 32 H 0.04 1.13 8.05 -2.39 -0.02 1.12 16 33 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.06 1.90 6.68 -2.39 -0.02 1.88 16 35 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 36 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 37 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 38 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.10 1.57 8.05 -2.39 -0.02 1.55 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.11 1.59 6.85 -2.39 -0.02 1.58 16 Total: -1.00 -69.44 347.12 3.64 -65.79 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.41 Total: 20.75 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.20 Total: -26.00 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.77 Total: -83.52 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.08 Total: -23.30 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.29 kcal Total: -69.44 3.64 -65.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262010890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.595 kcal (2) G-P(sol) polarization free energy of solvation -69.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds