Wall clock time and date at job start Mon Mar 30 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.47444 * 2 1 4 4 C 1.34236 * 117.00106 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99717 * 0.02562 * 4 3 2 6 6 C 1.50691 * 119.99712 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.47728 * 300.00340 * 6 4 3 8 8 N 1.46910 * 109.47003 * 180.02562 * 6 4 3 9 9 C 1.46898 * 111.00101 * 155.00027 * 8 6 4 10 10 C 1.52992 * 109.47092 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.46862 * 55.00713 * 10 9 8 12 12 C 1.52997 * 109.47482 * 295.00148 * 10 9 8 13 13 C 1.53006 * 109.47223 * 174.99860 * 10 9 8 14 14 C 1.50695 * 109.47196 * 185.00102 * 13 10 9 15 15 H 1.07999 * 120.00313 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99880 * 179.97438 * 14 13 10 17 17 N 1.31508 * 120.00054 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99981 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47023 * 60.00414 * 18 16 14 20 20 H 1.48496 * 109.47177 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47330 * 300.00546 * 18 16 14 22 22 C 1.53007 * 109.47491 * 60.00272 * 6 4 3 23 23 C 1.53000 * 117.49479 * 8.74591 * 22 6 4 24 24 C 1.52998 * 117.49726 * 300.08880 * 22 6 4 25 25 H 1.08997 * 109.47176 * 299.99869 * 1 2 3 26 26 H 1.09001 * 109.46551 * 59.99804 * 1 2 3 27 27 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47244 * 240.00025 * 2 1 3 29 29 H 1.09008 * 109.47121 * 120.00535 * 2 1 3 30 30 H 1.00902 * 110.99558 * 278.95343 * 8 6 4 31 31 H 1.09002 * 109.47308 * 60.00022 * 9 8 6 32 32 H 1.09006 * 109.47288 * 300.00665 * 9 8 6 33 33 H 1.09002 * 109.47153 * 59.99783 * 12 10 9 34 34 H 1.09001 * 109.46832 * 299.99974 * 12 10 9 35 35 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 36 36 H 1.09007 * 109.47135 * 305.00448 * 13 10 9 37 37 H 1.08996 * 109.46945 * 64.99955 * 13 10 9 38 38 H 0.97003 * 120.00316 * 180.02562 * 17 16 14 39 39 H 1.09000 * 115.55268 * 154.41114 * 22 6 4 40 40 H 1.09007 * 117.50082 * 359.97438 * 23 22 6 41 41 H 1.08997 * 117.49856 * 145.02136 * 23 22 6 42 42 H 1.08998 * 117.49699 * 214.98382 * 24 22 6 43 43 H 1.09000 * 117.49874 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9372 0.0012 7 1 3.5852 3.4698 -0.8888 8 7 5.3879 2.8603 0.0010 9 6 5.9786 4.0743 -0.5780 10 6 7.5040 3.9575 -0.5603 11 1 7.8042 3.0422 -1.0704 12 6 7.9958 3.9192 0.8880 13 6 8.1162 5.1639 -1.2751 14 6 9.6102 4.9890 -1.3658 15 1 10.0765 4.1056 -0.9552 16 6 10.3819 5.9564 -1.9741 17 7 9.8141 7.0318 -2.4745 18 14 12.2337 5.7393 -2.0873 19 1 12.5415 4.5029 -2.8501 20 1 12.8279 6.9102 -2.7809 21 1 12.8041 5.6324 -0.7203 22 6 3.4488 3.6839 1.2505 23 6 2.7060 2.8770 2.3172 24 6 1.9414 3.8680 1.4362 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 5.7413 2.6946 0.9315 31 1 5.6742 4.9416 0.0078 32 1 5.6346 4.1912 -1.6057 33 1 7.5597 3.0597 1.3972 34 1 7.6956 4.8345 1.3980 35 1 9.0826 3.8355 0.9006 36 1 7.6979 5.2424 -2.2786 37 1 7.8899 6.0712 -0.7151 38 1 10.3568 7.7122 -2.9028 39 1 4.1000 4.4890 1.5911 40 1 2.5531 1.8142 2.1288 41 1 2.8680 3.1514 3.3595 42 1 1.6007 4.7941 1.8991 43 1 1.2859 3.4576 0.6681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262010891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:25 Heat of formation + Delta-G solvation = -95.138766 kcal Electronic energy + Delta-G solvation = -20972.973295 eV Core-core repulsion = 17824.832610 eV Total energy + Delta-G solvation = -3148.140685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84295 -39.10933 -37.75246 -37.49348 -35.24245 -33.66825 -32.57888 -29.44921 -28.28874 -26.47202 -24.54970 -24.02225 -23.37807 -22.86910 -21.10586 -20.75243 -18.72335 -18.47883 -18.14399 -17.40550 -16.64842 -16.37967 -16.23471 -15.51056 -15.30907 -15.01678 -14.69933 -14.38049 -14.06334 -13.79451 -13.55815 -13.52272 -13.25987 -13.10869 -12.76388 -12.69493 -12.61229 -12.49860 -12.25338 -12.23032 -11.97889 -11.71183 -11.55084 -11.48267 -11.33260 -11.07660 -11.04528 -10.89951 -10.51396 -9.45293 -8.16356 -6.24841 1.19031 1.40690 1.43160 1.50621 1.53114 2.43011 2.78406 3.17146 3.20379 3.57694 3.67648 3.90518 4.01247 4.07234 4.11445 4.18107 4.21225 4.32736 4.36131 4.46559 4.50320 4.75793 4.77004 4.80966 4.86406 4.94928 4.97894 5.02928 5.12080 5.18468 5.24163 5.30486 5.37439 5.46453 5.49268 5.55846 5.78558 5.89145 5.93522 6.30327 6.33643 6.80200 6.90589 7.43026 8.95389 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035748 B = 0.003335 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.078596 B = 8394.310941 C = 8652.370041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.523 6.523 6 C 0.128 3.872 7 H 0.122 0.878 8 N -0.676 5.676 9 C 0.082 3.918 10 C -0.077 4.077 11 H 0.051 0.949 12 C -0.127 4.127 13 C 0.035 3.965 14 C -0.531 4.531 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.958 3.042 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.267 1.267 22 C -0.196 4.196 23 C -0.177 4.177 24 C -0.147 4.147 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.352 0.648 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.044 0.956 36 H -0.012 1.012 37 H -0.004 1.004 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.816 -9.796 9.099 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.315 3.685 5 O -0.410 6.410 6 C 0.016 3.984 7 H 0.140 0.860 8 N -0.309 5.309 9 C -0.047 4.047 10 C -0.096 4.096 11 H 0.069 0.931 12 C -0.184 4.184 13 C -0.002 4.002 14 C -0.569 4.569 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.783 3.217 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.216 4.216 23 C -0.214 4.214 24 C -0.185 4.185 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.173 0.827 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.007 0.993 37 H 0.014 0.986 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.544 -10.331 8.419 24.488 hybrid contribution 1.171 0.560 0.244 1.321 sum -19.373 -9.771 8.663 23.363 Atomic orbital electron populations 1.21802 0.90124 1.04259 1.03838 1.23249 0.97180 0.79570 1.02166 1.86549 1.23410 1.33252 1.83854 1.23795 0.80778 0.92506 0.71450 1.90652 1.61220 1.43671 1.45499 1.20759 0.88983 0.88287 1.00359 0.86016 1.60073 1.02988 1.38676 1.29157 1.21920 0.94224 0.89459 0.99064 1.21025 0.93068 0.98560 0.96930 0.93063 1.21649 1.01019 1.00484 0.95254 1.18975 0.94494 0.92912 0.93840 1.21616 0.93757 1.04963 1.36573 0.92365 1.25903 1.03527 0.95046 0.95284 1.70078 1.37361 1.10161 1.39839 0.85604 0.79828 0.77611 0.78635 1.19552 1.20914 1.19221 1.22915 0.97902 1.03375 0.97423 1.23115 1.04210 0.97214 0.96851 1.23078 0.91844 1.01092 1.02454 0.90920 0.91277 0.88469 0.92028 0.91594 0.82723 0.94011 0.91753 0.92072 0.93371 0.93683 0.99318 0.98586 0.92915 0.86235 0.89953 0.87391 0.86972 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 10.29 71.98 0.74 -0.73 16 2 C 0.05 0.89 6.19 71.98 0.45 1.34 16 3 O -0.35 -7.49 7.11 -51.48 -0.37 -7.85 16 4 C 0.47 12.60 5.79 71.23 0.41 13.02 16 5 O -0.52 -17.67 16.18 21.96 0.36 -17.31 16 6 C 0.13 3.17 2.90 44.17 0.13 3.30 16 7 H 0.12 2.86 7.80 -2.39 -0.02 2.84 16 8 N -0.68 -20.36 5.74 -495.43 -2.84 -23.21 16 9 C 0.08 2.74 4.94 86.30 0.43 3.17 16 10 C -0.08 -3.17 2.54 -10.79 -0.03 -3.20 16 11 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 12 C -0.13 -4.65 8.77 71.98 0.63 -4.02 16 13 C 0.04 1.85 4.45 29.85 0.13 1.98 16 14 C -0.53 -30.26 8.41 25.60 0.22 -30.05 16 15 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 17 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 18 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C -0.20 -3.91 5.59 -10.79 -0.06 -3.97 16 23 C -0.18 -3.12 9.54 30.62 0.29 -2.83 16 24 C -0.15 -2.31 9.77 30.62 0.30 -2.01 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 1.15 8.13 -2.38 -0.02 1.13 16 29 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 30 H 0.35 10.20 6.73 -89.69 -0.60 9.60 16 31 H 0.04 1.31 7.63 -2.39 -0.02 1.29 16 32 H 0.06 2.24 8.06 -2.38 -0.02 2.22 16 33 H 0.06 1.88 6.68 -2.39 -0.02 1.87 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.81 6.95 -2.38 -0.02 1.79 16 36 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.12 2.41 7.71 -2.39 -0.02 2.39 16 40 H 0.08 1.64 5.86 -2.38 -0.01 1.63 16 41 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 42 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.11 1.70 6.84 -2.39 -0.02 1.68 16 Total: -1.00 -67.80 346.99 3.93 -63.87 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.37 Total: 17.90 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 4.10 Total: -23.55 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.56 Total: -79.97 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.01 Total: -25.17 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.80 3.93 -63.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262010891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.268 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds