Wall clock time and date at job start Mon Mar 30 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 110.99979 * 2 1 4 4 C 1.52995 * 109.46906 * 295.86223 * 3 2 1 5 5 H 1.09000 * 109.47288 * 60.00479 * 4 3 2 6 6 O 1.42900 * 109.47573 * 300.00009 * 4 3 2 7 7 C 1.50707 * 109.46674 * 179.97438 * 4 3 2 8 8 H 1.07992 * 120.00381 * 0.02562 * 7 4 3 9 9 C 1.37888 * 119.99491 * 180.02562 * 7 4 3 10 10 N 1.31513 * 119.99408 * 179.97438 * 9 7 4 11 11 Si 1.86797 * 120.00157 * 0.02562 * 9 7 4 12 12 H 1.48507 * 109.46869 * 90.00026 * 11 9 7 13 13 H 1.48497 * 109.47002 * 209.99686 * 11 9 7 14 14 H 1.48494 * 109.47096 * 329.99971 * 11 9 7 15 15 C 1.46899 * 111.00088 * 123.95628 * 2 1 3 16 16 C 1.53004 * 109.47436 * 157.51164 * 15 2 1 17 17 C 1.54172 * 112.29413 * 303.29139 * 16 15 2 18 18 C 1.56248 * 103.63227 * 212.30043 * 17 16 15 19 19 C 1.54835 * 102.85306 * 38.25189 * 18 17 16 20 20 C 1.54144 * 104.35100 * 321.83185 * 19 18 17 21 21 H 1.09003 * 111.67556 * 145.10804 * 20 19 18 22 22 O 1.43816 * 109.10095 * 268.45794 * 20 19 18 23 23 C 1.44580 * 106.57681 * 86.54171 * 22 20 19 24 24 C 1.54899 * 112.35556 * 65.96251 * 16 15 2 25 25 H 1.09000 * 109.46961 * 65.63717 * 1 2 3 26 26 H 1.09004 * 109.46889 * 185.63698 * 1 2 3 27 27 H 1.09003 * 109.47103 * 305.63467 * 1 2 3 28 28 H 1.09000 * 109.46756 * 175.86376 * 3 2 1 29 29 H 1.08994 * 109.47231 * 55.86496 * 3 2 1 30 30 H 0.96699 * 113.99466 * 299.99982 * 6 4 3 31 31 H 0.97001 * 119.99685 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.46961 * 277.51342 * 15 2 1 33 33 H 1.09000 * 109.47160 * 37.50956 * 15 2 1 34 34 H 1.08996 * 110.47019 * 331.37374 * 17 16 15 35 35 H 1.08998 * 110.46975 * 93.97250 * 17 16 15 36 36 H 1.09001 * 110.75834 * 279.87245 * 18 17 16 37 37 H 1.09010 * 110.64987 * 156.57767 * 18 17 16 38 38 H 1.09001 * 110.45383 * 203.11801 * 19 18 17 39 39 H 1.08996 * 110.56688 * 80.60870 * 19 18 17 40 40 H 1.08999 * 110.74200 * 284.04060 * 23 22 20 41 41 H 1.09005 * 110.73980 * 160.71185 * 23 22 20 42 42 H 1.09003 * 110.94850 * 261.82662 * 24 16 15 43 43 H 1.09001 * 110.94902 * 25.49925 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5907 2.0730 -1.2980 5 1 0.5036 2.1012 -1.3721 6 8 2.1258 1.3574 -2.4132 7 6 2.1303 3.4801 -1.2977 8 1 2.7047 3.8380 -0.4561 9 6 1.8905 4.3106 -2.3720 10 7 2.3609 5.5387 -2.3714 11 14 0.8963 3.6918 -3.8273 12 1 -0.5431 3.9792 -3.6015 13 1 1.3499 4.3774 -5.0640 14 1 1.0917 2.2270 -3.9732 15 6 1.9954 -0.7660 1.1375 16 6 3.4225 -1.2229 0.8282 17 6 3.5029 -2.0522 -0.4690 18 6 4.6636 -3.0604 -0.1902 19 6 4.4550 -3.4220 1.3008 20 6 4.0216 -2.0969 1.9583 21 1 3.2980 -2.2613 2.7567 22 8 5.1874 -1.4100 2.4458 23 6 5.6984 -0.6297 1.3412 24 6 4.4099 -0.0348 0.7145 25 1 -0.3633 0.4239 -0.9362 26 1 -0.3633 -1.0227 0.1009 27 1 -0.3633 0.5987 0.8353 28 1 3.0825 1.3432 0.0741 29 1 1.5873 1.9173 0.8506 30 1 3.0907 1.2927 -2.4126 31 1 2.1919 6.1231 -3.1270 32 1 2.0002 -0.1373 2.0279 33 1 1.3646 -1.6377 1.3117 34 1 2.5630 -2.5751 -0.6460 35 1 3.7494 -1.4121 -1.3161 36 1 5.6328 -2.5849 -0.3406 37 1 4.5642 -3.9447 -0.8198 38 1 5.3867 -3.7784 1.7402 39 1 3.6729 -4.1736 1.4068 40 1 6.2170 -1.2674 0.6253 41 1 6.3549 0.1632 1.6998 42 1 4.5735 0.2376 -0.3282 43 1 4.0564 0.8220 1.2882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308168822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:45 Heat of formation + Delta-G solvation = -83.718584 kcal Electronic energy + Delta-G solvation = -22569.298560 eV Core-core repulsion = 19421.653092 eV Total energy + Delta-G solvation = -3147.645468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77424 -37.55685 -35.37658 -34.54283 -32.21445 -31.71230 -29.55619 -28.52112 -27.23848 -26.06991 -25.07167 -22.31523 -21.97002 -20.64198 -19.92161 -19.05841 -17.30900 -16.82735 -15.75267 -15.09837 -15.01353 -14.78051 -14.66637 -14.20298 -13.85173 -13.61478 -13.54516 -13.39858 -12.97698 -12.69284 -12.55170 -11.79008 -11.64718 -11.63094 -11.49467 -11.34126 -10.98038 -10.91361 -10.78437 -10.67757 -10.58289 -10.48716 -10.31925 -10.09929 -9.70166 -9.43840 -8.95736 -8.60857 -8.20835 -7.76865 -6.12289 -4.23175 3.39352 3.49163 3.76685 3.92247 4.20770 4.53471 4.54720 4.69039 4.82545 5.01208 5.08974 5.17249 5.23662 5.31634 5.42860 5.52101 5.59812 5.63077 5.67176 5.68448 5.74082 5.82934 5.88717 5.93471 5.96140 6.03241 6.07716 6.11037 6.20136 6.29175 6.30897 6.37885 6.43763 6.47376 6.68999 6.94487 7.29618 7.41395 7.59263 7.72393 8.30347 8.84785 9.12097 9.53222 10.98449 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.005514 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.215966 B = 5076.485816 C = 5318.636377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.527 5.527 3 C 0.021 3.979 4 C 0.202 3.798 5 H 0.050 0.950 6 O -0.569 6.569 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.084 3.916 10 N -0.894 5.894 11 Si 0.870 3.130 12 H -0.289 1.289 13 H -0.297 1.297 14 H -0.215 1.215 15 C 0.073 3.927 16 C -0.080 4.080 17 C -0.092 4.092 18 C -0.134 4.134 19 C -0.143 4.143 20 C 0.079 3.921 21 H 0.095 0.905 22 O -0.375 6.375 23 C 0.040 3.960 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.018 0.982 28 H 0.089 0.911 29 H 0.027 0.973 30 H 0.351 0.649 31 H 0.264 0.736 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -16.845 6.377 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.251 5.251 3 C -0.106 4.106 4 C 0.144 3.856 5 H 0.068 0.932 6 O -0.373 6.373 7 C -0.603 4.603 8 H 0.088 0.912 9 C -0.120 4.120 10 N -0.532 5.532 11 Si 0.697 3.303 12 H -0.216 1.216 13 H -0.223 1.223 14 H -0.137 1.137 15 C -0.056 4.056 16 C -0.081 4.081 17 C -0.129 4.129 18 C -0.171 4.171 19 C -0.181 4.181 20 C 0.020 3.980 21 H 0.113 0.887 22 O -0.294 6.294 23 C -0.036 4.036 24 C -0.182 4.182 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.197 0.803 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.448 -16.986 5.922 18.155 hybrid contribution -0.358 0.605 0.093 0.709 sum 2.090 -16.382 6.015 17.576 Atomic orbital electron populations 1.22375 0.88193 1.00324 1.01248 1.61947 1.07007 1.15276 1.40845 1.23306 1.01368 0.86087 0.99838 1.19694 0.94593 0.89485 0.81847 0.93226 1.86668 1.23976 1.78637 1.48069 1.21529 1.36721 0.96041 1.05986 0.91211 1.24982 0.94381 0.94112 0.98564 1.69963 1.44813 1.06819 1.31561 0.87040 0.79188 0.82947 0.81154 1.21600 1.22342 1.13703 1.21967 0.93952 0.97407 0.92231 1.22441 0.94970 0.95178 0.95519 1.22456 0.97706 0.96485 0.96292 1.22923 0.99331 0.99296 0.95573 1.22806 1.01755 0.97243 0.96314 1.23387 0.87402 0.91508 0.95675 0.88693 1.88920 1.42881 1.62998 1.34630 1.23804 0.96526 0.94250 0.89042 1.23518 0.94302 0.97768 1.02575 0.90852 0.92523 0.96302 0.89346 0.95439 0.80341 0.92641 0.94911 0.91478 0.91282 0.90514 0.91427 0.91758 0.91054 0.91057 0.91892 0.89323 0.89286 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.17 60.06 0.55 0.96 16 2 N -0.53 -8.51 4.17 -242.92 -1.01 -9.53 16 3 C 0.02 0.40 4.08 -3.83 -0.02 0.38 16 4 C 0.20 4.59 2.13 -27.88 -0.06 4.53 16 5 H 0.05 1.19 6.05 -51.93 -0.31 0.88 16 6 O -0.57 -12.61 10.01 -35.23 -0.35 -12.96 16 7 C -0.56 -15.44 9.34 -34.43 -0.32 -15.76 16 8 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 9 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 10 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 11 Si 0.87 21.76 26.99 -169.99 -4.59 17.17 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 14 H -0.21 -5.24 5.31 56.52 0.30 -4.94 16 15 C 0.07 0.99 4.21 -3.82 -0.02 0.98 16 16 C -0.08 -1.01 0.81 -151.88 -0.12 -1.13 16 17 C -0.09 -1.11 5.57 -24.38 -0.14 -1.25 16 18 C -0.13 -1.39 6.40 -24.02 -0.15 -1.54 16 19 C -0.14 -1.47 6.41 -25.17 -0.16 -1.63 16 20 C 0.08 0.94 4.16 -25.12 -0.10 0.83 16 21 H 0.10 1.06 7.87 -51.93 -0.41 0.66 16 22 O -0.38 -5.13 11.16 -35.23 -0.39 -5.52 16 23 C 0.04 0.49 7.23 38.29 0.28 0.77 16 24 C -0.14 -1.94 4.18 -24.59 -0.10 -2.04 16 25 H 0.07 1.25 6.70 -51.93 -0.35 0.90 16 26 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 27 H 0.02 0.28 8.09 -51.93 -0.42 -0.14 16 28 H 0.09 1.62 3.71 -51.93 -0.19 1.43 16 29 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.35 7.00 9.04 45.56 0.41 7.41 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.03 0.47 7.96 -51.93 -0.41 0.06 16 33 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 34 H 0.07 0.86 7.98 -51.93 -0.41 0.45 16 35 H 0.08 1.03 7.45 -51.93 -0.39 0.64 16 36 H 0.07 0.70 5.98 -51.93 -0.31 0.39 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.70 5.77 -51.93 -0.30 0.40 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.24 6.97 -51.93 -0.36 0.87 16 43 H 0.08 1.20 6.53 -51.93 -0.34 0.86 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -30.45 317.48 -7.62 -38.07 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.37 Total: 6.99 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.46 Total: -12.59 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.24 Total: -35.94 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.75 Total: -18.48 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.45 -7.62 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308168822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.650 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds