Wall clock time and date at job start Mon Mar 30 2020 01:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 110.99979 * 2 1 4 4 C 1.52995 * 109.46906 * 295.86223 * 3 2 1 5 5 H 1.09000 * 109.47288 * 60.00479 * 4 3 2 6 6 O 1.42900 * 109.47573 * 300.00009 * 4 3 2 7 7 C 1.50707 * 109.46674 * 179.97438 * 4 3 2 8 8 H 1.07992 * 120.00381 * 0.02562 * 7 4 3 9 9 C 1.37888 * 119.99491 * 180.02562 * 7 4 3 10 10 N 1.31513 * 119.99408 * 179.97438 * 9 7 4 11 11 Si 1.86797 * 120.00157 * 0.02562 * 9 7 4 12 12 H 1.48507 * 109.46869 * 90.00026 * 11 9 7 13 13 H 1.48497 * 109.47002 * 209.99686 * 11 9 7 14 14 H 1.48494 * 109.47096 * 329.99971 * 11 9 7 15 15 C 1.46899 * 111.00088 * 123.95628 * 2 1 3 16 16 C 1.53004 * 109.47436 * 157.51164 * 15 2 1 17 17 C 1.54172 * 112.29413 * 303.29139 * 16 15 2 18 18 C 1.56248 * 103.63227 * 212.30043 * 17 16 15 19 19 C 1.54835 * 102.85306 * 38.25189 * 18 17 16 20 20 C 1.54144 * 104.35100 * 321.83185 * 19 18 17 21 21 H 1.09003 * 111.67556 * 145.10804 * 20 19 18 22 22 O 1.43816 * 109.10095 * 268.45794 * 20 19 18 23 23 C 1.44580 * 106.57681 * 86.54171 * 22 20 19 24 24 C 1.54899 * 112.35556 * 65.96251 * 16 15 2 25 25 H 1.09000 * 109.46961 * 65.63717 * 1 2 3 26 26 H 1.09004 * 109.46889 * 185.63698 * 1 2 3 27 27 H 1.09003 * 109.47103 * 305.63467 * 1 2 3 28 28 H 1.09000 * 109.46756 * 175.86376 * 3 2 1 29 29 H 1.08994 * 109.47231 * 55.86496 * 3 2 1 30 30 H 0.96699 * 113.99466 * 299.99982 * 6 4 3 31 31 H 0.97001 * 119.99685 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.46961 * 277.51342 * 15 2 1 33 33 H 1.09000 * 109.47160 * 37.50956 * 15 2 1 34 34 H 1.08996 * 110.47019 * 331.37374 * 17 16 15 35 35 H 1.08998 * 110.46975 * 93.97250 * 17 16 15 36 36 H 1.09001 * 110.75834 * 279.87245 * 18 17 16 37 37 H 1.09010 * 110.64987 * 156.57767 * 18 17 16 38 38 H 1.09001 * 110.45383 * 203.11801 * 19 18 17 39 39 H 1.08996 * 110.56688 * 80.60870 * 19 18 17 40 40 H 1.08999 * 110.74200 * 284.04060 * 23 22 20 41 41 H 1.09005 * 110.73980 * 160.71185 * 23 22 20 42 42 H 1.09003 * 110.94850 * 261.82662 * 24 16 15 43 43 H 1.09001 * 110.94902 * 25.49925 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5907 2.0730 -1.2980 5 1 0.5036 2.1012 -1.3721 6 8 2.1258 1.3574 -2.4132 7 6 2.1303 3.4801 -1.2977 8 1 2.7047 3.8380 -0.4561 9 6 1.8905 4.3106 -2.3720 10 7 2.3609 5.5387 -2.3714 11 14 0.8963 3.6918 -3.8273 12 1 -0.5431 3.9792 -3.6015 13 1 1.3499 4.3774 -5.0640 14 1 1.0917 2.2270 -3.9732 15 6 1.9954 -0.7660 1.1375 16 6 3.4225 -1.2229 0.8282 17 6 3.5029 -2.0522 -0.4690 18 6 4.6636 -3.0604 -0.1902 19 6 4.4550 -3.4220 1.3008 20 6 4.0216 -2.0969 1.9583 21 1 3.2980 -2.2613 2.7567 22 8 5.1874 -1.4100 2.4458 23 6 5.6984 -0.6297 1.3412 24 6 4.4099 -0.0348 0.7145 25 1 -0.3633 0.4239 -0.9362 26 1 -0.3633 -1.0227 0.1009 27 1 -0.3633 0.5987 0.8353 28 1 3.0825 1.3432 0.0741 29 1 1.5873 1.9173 0.8506 30 1 3.0907 1.2927 -2.4126 31 1 2.1919 6.1231 -3.1270 32 1 2.0002 -0.1373 2.0279 33 1 1.3646 -1.6377 1.3117 34 1 2.5630 -2.5751 -0.6460 35 1 3.7494 -1.4121 -1.3161 36 1 5.6328 -2.5849 -0.3406 37 1 4.5642 -3.9447 -0.8198 38 1 5.3867 -3.7784 1.7402 39 1 3.6729 -4.1736 1.4068 40 1 6.2170 -1.2674 0.6253 41 1 6.3549 0.1632 1.6998 42 1 4.5735 0.2376 -0.3282 43 1 4.0564 0.8220 1.2882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308168822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:44 Heat of formation + Delta-G solvation = -106.216987 kcal Electronic energy + Delta-G solvation = -22570.274164 eV Core-core repulsion = 19421.653092 eV Total energy + Delta-G solvation = -3148.621072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77323 -39.02721 -36.90084 -35.63050 -34.38810 -32.72784 -31.01503 -29.84039 -28.21561 -27.63100 -26.39312 -23.79128 -23.06632 -21.55925 -21.50781 -20.10426 -19.27281 -17.83347 -16.92468 -16.75918 -16.56061 -16.40009 -15.84612 -15.41094 -15.10459 -14.96572 -14.93683 -14.58721 -14.43564 -14.16403 -13.70390 -13.48547 -12.98472 -12.79512 -12.70381 -12.64938 -12.57497 -12.37181 -12.03634 -11.92520 -11.70712 -11.64883 -11.55471 -11.37039 -11.09680 -10.88248 -10.78883 -10.39253 -10.06143 -9.11902 -8.34800 -6.48913 1.39568 1.45477 1.76209 2.44544 2.91135 3.03426 3.06836 3.54067 3.67052 3.87360 4.05335 4.12402 4.15269 4.22233 4.30468 4.36592 4.41968 4.49385 4.52430 4.61061 4.68411 4.75851 4.77099 4.80168 4.86619 4.94045 5.02210 5.04012 5.08856 5.10743 5.17735 5.25381 5.33990 5.46273 5.48657 5.55007 5.55640 5.99028 6.09014 6.17719 6.29027 6.64087 7.24229 7.39950 8.79562 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.005514 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.215966 B = 5076.485816 C = 5318.636377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.527 5.527 3 C 0.035 3.965 4 C 0.211 3.789 5 H 0.044 0.956 6 O -0.568 6.568 7 C -0.565 4.565 8 H 0.033 0.967 9 C 0.030 3.970 10 N -0.941 5.941 11 Si 0.937 3.063 12 H -0.288 1.288 13 H -0.298 1.298 14 H -0.202 1.202 15 C 0.074 3.926 16 C -0.078 4.078 17 C -0.088 4.088 18 C -0.128 4.128 19 C -0.137 4.137 20 C 0.076 3.924 21 H 0.103 0.897 22 O -0.393 6.393 23 C 0.043 3.957 24 C -0.146 4.146 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.018 0.982 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.363 0.637 31 H 0.266 0.734 32 H 0.024 0.976 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -19.714 6.108 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.251 5.251 3 C -0.093 4.093 4 C 0.153 3.847 5 H 0.062 0.938 6 O -0.374 6.374 7 C -0.603 4.603 8 H 0.052 0.948 9 C -0.170 4.170 10 N -0.580 5.580 11 Si 0.762 3.238 12 H -0.215 1.215 13 H -0.225 1.225 14 H -0.124 1.124 15 C -0.054 4.054 16 C -0.079 4.079 17 C -0.126 4.126 18 C -0.166 4.166 19 C -0.174 4.174 20 C 0.018 3.982 21 H 0.121 0.879 22 O -0.312 6.312 23 C -0.033 4.033 24 C -0.184 4.184 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.036 0.964 28 H 0.110 0.890 29 H 0.029 0.971 30 H 0.209 0.791 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.038 -19.879 5.667 20.771 hybrid contribution -0.192 1.512 0.257 1.546 sum 1.846 -18.367 5.925 19.387 Atomic orbital electron populations 1.22424 0.87513 1.02099 1.00293 1.61891 1.07673 1.13186 1.42303 1.22988 1.01674 0.87570 0.97035 1.19446 0.93898 0.87481 0.83867 0.93848 1.86594 1.25079 1.78025 1.47701 1.21866 1.35571 0.98422 1.04460 0.94830 1.25833 0.95529 0.94152 1.01475 1.70090 1.46927 1.08315 1.32701 0.86013 0.77431 0.82837 0.77559 1.21472 1.22522 1.12357 1.22044 0.94970 0.97562 0.90812 1.22430 0.94044 0.94961 0.96466 1.22385 0.98501 0.96506 0.95174 1.22892 0.98406 0.99267 0.95999 1.22777 1.02419 0.96516 0.95720 1.23521 0.87081 0.91954 0.95661 0.87910 1.88903 1.43557 1.63369 1.35394 1.23833 0.95927 0.94503 0.89003 1.23447 0.95603 0.97577 1.01756 0.92589 0.89514 0.96354 0.88956 0.97092 0.79057 0.92529 0.95772 0.89119 0.91192 0.92081 0.91594 0.90327 0.90829 0.89366 0.90475 0.88949 0.90047 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.17 127.69 1.17 1.88 16 2 N -0.53 -16.21 4.17 -922.46 -3.85 -20.06 16 3 C 0.04 1.33 4.08 86.30 0.35 1.68 16 4 C 0.21 9.56 2.13 29.85 0.06 9.63 16 5 H 0.04 2.05 6.05 -2.39 -0.01 2.04 16 6 O -0.57 -24.34 10.01 -148.98 -1.49 -25.83 16 7 C -0.57 -31.52 9.34 25.61 0.24 -31.28 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 9 C 0.03 1.71 5.47 84.66 0.46 2.17 16 10 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 11 Si 0.94 45.15 26.99 68.60 1.85 47.00 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 13 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 14 H -0.20 -9.23 5.31 99.48 0.53 -8.70 16 15 C 0.07 1.87 4.21 86.30 0.36 2.24 16 16 C -0.08 -1.83 0.81 -50.48 -0.04 -1.87 16 17 C -0.09 -1.92 5.57 32.12 0.18 -1.74 16 18 C -0.13 -2.28 6.40 32.35 0.21 -2.07 16 19 C -0.14 -2.35 6.41 31.61 0.20 -2.15 16 20 C 0.08 1.63 4.16 31.64 0.13 1.76 16 21 H 0.10 2.03 7.87 -2.39 -0.02 2.01 16 22 O -0.39 -10.11 11.16 -148.98 -1.66 -11.77 16 23 C 0.04 1.01 7.23 72.72 0.53 1.54 16 24 C -0.15 -3.86 4.18 31.98 0.13 -3.73 16 25 H 0.06 1.81 6.70 -2.39 -0.02 1.79 16 26 H 0.09 1.96 7.82 -2.38 -0.02 1.95 16 27 H 0.02 0.52 8.09 -2.39 -0.02 0.50 16 28 H 0.09 3.43 3.71 -2.39 -0.01 3.43 16 29 H 0.01 0.45 8.10 -2.39 -0.02 0.43 16 30 H 0.36 13.99 9.04 -74.06 -0.67 13.32 16 31 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.02 0.66 7.96 -2.39 -0.02 0.64 16 33 H 0.09 1.90 7.69 -2.39 -0.02 1.88 16 34 H 0.07 1.53 7.98 -2.39 -0.02 1.51 16 35 H 0.06 1.53 7.45 -2.39 -0.02 1.51 16 36 H 0.07 1.20 5.98 -2.39 -0.01 1.18 16 37 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.58 5.77 -2.39 -0.01 1.57 16 41 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.08 2.24 6.97 -2.39 -0.02 2.23 16 43 H 0.06 1.78 6.53 -2.39 -0.02 1.76 16 Total: -1.00 -65.26 317.48 -0.71 -65.97 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.15 Total: 24.87 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.99 Total: -21.95 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -3.55 Total: -78.30 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -3.15 Total: -37.60 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.85 Total: 47.00 kcal Total: -65.26 -0.71 -65.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308168822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.245 kcal (2) G-P(sol) polarization free energy of solvation -65.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds